Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acytostelium_20ellipticum_20[genbank_20GCA_5F900092235.1_202017-01- 02] 10,327 sequences; 62,160,181 total letters Query= NC_031230.1 Length=98136 Score E Sequences producing significant alignments: (Bits) Value seq3473 190 1e-43 seq90 96.9 2e-15 >seq3473 Length=4258 Score = 190 bits (210), Expect = 1e-43 Identities = 702/1087 (65%), Gaps = 75/1087 (7%) Strand=Plus/Plus Query 46307 TGCCATTCATCTACCCCCACGTTGCGCTGATGCCAGATGCTCACGCAGGCAAGGGGTCTG 46366 |||| |||||| |||| ||| | || |||||||| || || ||| ||||||||| | Sbjct 1581 TGCCGTTCATCCACCCGCACCTGGCACTGATGCCGGACGCGCACCTCGGCAAGGGGGCGA 1640 Query 46367 CCGTGGGCACGGTGATCCCCACCAAGGACGCCGTCATCCCAGCGGCCGTGGGTGTCGACA 46426 | || ||| |||| ||||| || | ||| ||||||| || ||||| || ||||||| Sbjct 1641 CGGTCGGCTCGGTCATCCCGACGCTCGGCGCGATCATCCCCGCCGCCGTCGGCGTCGACA 1700 Query 46427 TCGGTTGCGGGATGATCGGCGTGGAGACCTGGGTCCAGAAGTCCGACATCGCCGG--GAT 46484 |||| ||||||||||||| ||| || | || || | |||| ||| ||| | Sbjct 1701 TCGGCTGCGGGATGATCGCCGTTCGTACGCCGTTCACGAGGAGCGACGTCGACGGTCGTC 1760 Query 46485 GGACCTAGCCCTCCTCCGTGAGTGCATCGAGAAGGAGATTCCACTCTCCCCCGGAAACTA 46544 || || ||| |||||| ||| |||||| | || || || || |||| || Sbjct 1761 GG--CTCGCCGACCTCCGGGAGCAGATCGAGCGCGCCATCCCCCTGTCGGCCGGCCGGTA 1818 Query 46545 CAACAAGAACCCACGTTGGGCACCGC-ATACCACGGAACGTATCGAGTTGCTCGAGAGGC 46603 |||| | | || ||| |||||| ||| || | | | ||| ||| ||| || Sbjct 1819 CAAC-CGCAAGGTCG-TGGCCACCGCGGAACCGCGCATC--ACCGA---GCTGGAGCAGC 1871 Query 46604 TCGCCGAGGACACAGGTGTGGACCTCTCACA-TTCGCC--GAAGTGGCGGGAACAGCTCG 46660 |||||||| | | || | |||| | || | |||| ||| ||||| ||| | | Sbjct 1872 TCGCCGAGAAGAACGGCTTCGACCCGGCGCAGTACGCCGGGAACTGGCGTCTGCAGTTGG 1931 Query 46661 GGTCGCTCGGCGGCGGCAACCACTTCATCGAGCTGTGCCAGTCGGTGATTGCGGAATACG 46720 | ||||||| |||||||||||||||||| ||| | |||| ||| || Sbjct 1932 GCACGCTCGGTTCAGGCAACCACTTCATCGAG--GTGTCGGTCGATGA--GC-------- 1979 Query 46721 ACGACGGTGAGCTGTGGCTGTTCCTCCATTCGGGTTCGCGTGGTGTCGGCAACAAGATCG 46780 || | | | ||||||||||| || ||||| ||||| || |||||||||||||||| Sbjct 1980 ---TCGATCGGGTCTGGCTGTTCCTGCACTCGGGCTCGCGAGGCGTCGGCAACAAGATCG 2036 Query 46781 CCCAGAAGCANNNNNNNNNNNNNNNNNNNNNGTGCAAGCGATGGCATGTCCCGCTGGCGA 46840 || | | || | | || ||| || || | Sbjct 2037 CCGGGCACCACATCGCCGTCGCCCAGCGGCTGGCGAGGCAGTGGTGGATCGACCTTCCCG 2096 Query 46841 ATCCTGACCTGGCCTACCTACCCTCCGGCACGCAGGAATTCACCACCTACCTACGAGAGC 46900 | || |||||||| ||||| | ||||| | ||| |||||| |||| | || |||| Sbjct 2097 ACCCCGACCTGGCATACCTGGTCGAGGGCACACCGGAGTTCACCCGCTACATCCGGGAGC 2156 Query 46901 TGCGGTGGGCCCAGCGATTCGCACTCGAGAACCGCGCCGAGATGATGGATCGGTTCGTCG 46960 ||||||||||||||| ||||| || |||||| | |||||||||||||| || || Sbjct 2157 TGCGGTGGGCCCAGCACTTCGCGCTGCTGAACCGGGAGGAGATGATGGATCGCGTCATC- 2215 Query 46961 CGGTTTTCCAGTGGTGGCTCGAGGATCAGGGGTACGACTTCCATAACGACGAGATGCCTG 47020 ||| || |||| ||| | || || || || |||| | Sbjct 2216 CGG-----CA--GGTG--TCGGAGTTCCTCGGAAC-----CCCGGTCGAC---------G 2252 Query 47021 ATGAGGTCGAGGTCCGGCGCATCAACTGCCACCACAACTACACCGAGAACGTCACGATCA 47080 | ||| ||||||||||||||||||||||| ||||||| | | | | Sbjct 2253 AACAGG---------AGCGCATCAACTGCCACCACAACTTCACCGAGTCGGAGAAGCACT 2303 Query 47081 ACGGCGAGAGGGTGTGGCTGACGCGCAAGGGTGCGATCGACGCCAGCGAGGGCAAGTACG 47140 |||| || ||||||| || | || ||||| || ||| | || || || | Sbjct 2304 ACGGGAAGCAGGTGTGGGTGTCACGGAAGGGAGCCATCCAGGCGGACGCCGGTCGACCGG 2363 Query 47141 GACTCATCCCCGGCTCCATGGGCACCAAGTCGTACGTCGTTGTGGGGCAGGGGAATTCGT 47200 | ||||||||||| || ||||| ||| || ||||| || | |||| || | || Sbjct 2364 GCCTCATCCCCGGGTCGATGGGGACCGCCTCTTACGTGGTGGAAGGGCTCGGCGACCCG- 2422 Query 47201 CTGGC-CTATACTCGGCACCACATGGGGCTGGCCGGAACTTCTCTCGCACCGAGGCTCGC 47259 | | | || |||| | || || || || || ||| | | ||| ||| | | ||| || Sbjct 2423 CAGTCGCTGAACTCCTCCCCGCACGGTGCCGGACGGGAGTACTCCCGCTCGGCGGCGCG- 2481 Query 47260 AAGCGG---TTCACTGCGGACGACCTCGCGA-AGGCCATGGAGGGCATCGAGTACCGCCA 47315 |||| ||||| ||| | || |||| |||| ||| ||||||||||| ||| | Sbjct 2482 --GCGGACCTTCACGCACGACCAGCT-GCGAGAGGCGATGACGGGCATCGAGTTCCGTGA 2538 Query 47316 CGGTGAGGAGTGGATCGACGAGATCCCCGCA-GCGTACAAGGACATCGACCAGGTCATCG 47374 | || | | ||||||||||| |||||| ||||||||| ||||||||||| || | Sbjct 2539 CACCGATGCCTTCATCGACGAGAT-CCCGCAGGCGTACAAGCCGATCGACCAGGTGATGG 2597 Query 47375 AGGACGC 47381 ||| || Sbjct 2598 CGGATGC 2604 >seq90 Length=95466 Score = 96.9 bits (106), Expect = 2e-15 Identities = 122/168 (73%), Gaps = 0/168 (0%) Strand=Plus/Plus Query 46277 CGCGCAAGCAGGCCGAGGAGATCGCCAGTCTGCCATTCATCTACCCCCACGTTGCGCTGA 46336 ||||| ||||| || | ||||| | ||||| |||||| ||| | | || ||| Sbjct 11438 CGCGCGAGCAGCTGCAGAACATCGCGCGCCTGCCCTTCATCCACCGCTGGATCTCGGTGA 11497 Query 46337 TGCCAGATGCTCACGCAGGCAAGGGGTCTGCCGTGGGCACGGTGATCCCCACCAAGGACG 46396 |||| || | ||| |||||||| | || | ||| ||||| | ||||||| | || Sbjct 11498 TGCCCGACGTGCACCTGGGCAAGGGCGCCACCATCGGCTCGGTGGTGCCCACCATCGGCG 11557 Query 46397 CCGTCATCCCAGCGGCCGTGGGTGTCGACATCGGTTGCGGGATGATCG 46444 | ||||||| ||||||||||| || |||||||| ||||| ||||||| Sbjct 11558 CGATCATCCCGGCGGCCGTGGGCGTGGACATCGGCTGCGGCATGATCG 11605 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 313870891138959