Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acytostelium_20ellipticum_20[genbank_20GCA_5F900092235.1_202017-01- 02] 10,327 sequences; 62,160,181 total letters Query= NC_031465.1 Length=360610 Score E Sequences producing significant alignments: (Bits) Value seq1971 120 7e-22 seq374 120 7e-22 seq1210 107 4e-18 >seq1971 Length=9940 Score = 120 bits (132), Expect = 7e-22 Identities = 158/219 (72%), Gaps = 0/219 (0%) Strand=Plus/Minus Query 151886 GAGTCTGAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCT 151945 ||| | |||||| || |||||||| ||||| || ||||||||||| |||| | || | Sbjct 4589 GAGACGGAGGACGAGGTGAAGAGTGGACTCCTTCTGGATGTTGTAGTCGGAGAGGGTGCG 4530 Query 151946 CCCATCTTCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTC 152005 || || || || || ||||| ||||| || | ||||||||| | | ||| || || Sbjct 4529 GCCGTCCTCAAGTTGCTTGCCGGCAAAGATGAGACGCTGCTGGTCGGGGGGGATGCCCTC 4470 Query 152006 CTTTTCTTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGT 152065 ||| || || || || ||||| |||| | | |||| || | ||| || || || || Sbjct 4469 CTTGTCCTGGATCTTGGTCTTGACGTTCTCGATGGTGTCCGAGCCCTCAACCTCGAGGGT 4410 Query 152066 AATAGTTTTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104 || || ||||| || || ||||| ||||||| |||||| Sbjct 4409 GATGGTCTTGCCGGTCAGGGTCTTGACGAAGATCTGCAT 4371 Score = 120 bits (132), Expect = 7e-22 Identities = 158/219 (72%), Gaps = 0/219 (0%) Strand=Plus/Minus Query 151886 GAGTCTGAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCT 151945 ||| | |||||| || |||||||| ||||| || ||||||||||| |||| | ||| | Sbjct 5045 GAGACGGAGGACGAGGTGAAGAGTGGACTCCTTCTGGATGTTGTAGTCGGAAAGAGTGCG 4986 Query 151946 CCCATCTTCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTC 152005 || || || || || |||||||| || || | ||| ||||| | | |||||| || Sbjct 4985 GCCGTCCTCGAGCTGCTTGCCGGCGAAAATGAGACGCTGTTGGTCGGGGGGGATTCCCTC 4926 Query 152006 CTTTTCTTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGT 152065 ||| || || || || ||||| |||| | | |||| || | ||| || || ||||| Sbjct 4925 CTTGTCCTGGATCTTGGTCTTGACGTTCTCGATGGTGTCGGAGCCCTCAACCTCGAGAGT 4866 Query 152066 AATAGTTTTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104 || || ||||| || | ||||| ||||| | |||||| Sbjct 4865 GATGGTCTTGCCAGTCAAGGTCTTGACGAAAATCTGCAT 4827 Score = 109 bits (120), Expect = 1e-18 Identities = 158/221 (71%), Gaps = 4/221 (2%) Strand=Plus/Minus Query 151886 GAGTCTGAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCT 151945 ||| | |||||| ||||| || |||||||| || ||||||||||| |||| | || | Sbjct 4133 GAGACGGAGGACGAGATGGAGGGTAGACTCCTTCTGGATGTTGTAGTCGGACAGGGTGCG 4074 Query 151946 CCCATCTTCTAG--GCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCT 152003 || || || || ||||| || ||||| || || | ||| ||||| | | |||||| Sbjct 4073 GCCGTCCTCAAGCTGCTTT--CCAGCGAAAATGAGACGCTGTTGGTCGGGGGGGATTCCC 4016 Query 152004 TCCTTTTCTTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGA 152063 ||||| || || || || ||||| |||| | | | || || | ||| || ||||| Sbjct 4015 TCCTTGTCCTGGATCTTGGTCTTGACGTTCTCAATGGTATCGGATCCCTCCACCTCAAGG 3956 Query 152064 GTAATAGTTTTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104 || || || ||||| || || ||||| ||||| | ||||| Sbjct 3955 GTGATGGTCTTGCCGGTCAGGGTCTTGACGAAAATTTGCAT 3915 Score = 105 bits (116), Expect = 2e-17 Identities = 157/221 (71%), Gaps = 4/221 (2%) Strand=Plus/Minus Query 151886 GAGTCTGAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCT 151945 ||| | ||| || | || || || ||||| || |||||||||||||| | | || | Sbjct 4361 GAGACGGAGCACCAAGTGGAGGGTGGACTCCTTCTGGATGTTGTAATCCGAGAGGGTGCG 4302 Query 151946 CCCATCTTCTAG--GCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCT 152003 || || || || ||||| || ||||| || || | ||| ||||| | | ||| ||| Sbjct 4301 GCCGTCCTCAAGCTGCTTT--CCAGCGAAAATGAGACGCTGTTGGTCGGGGGGGATGCCT 4244 Query 152004 TCCTTTTCTTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGA 152063 ||||| || || || || ||||| |||| | | |||| || | ||| || || || Sbjct 4243 TCCTTGTCCTGGATCTTGGTCTTGACGTTCTCGATGGTGTCCGAGCCCTCGACCTCGAGG 4184 Query 152064 GTAATAGTTTTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104 || || || ||||| ||||| ||||| ||||||| |||||| Sbjct 4183 GTGATGGTCTTGCCGGTGAGGGTCTTGACGAAGATCTGCAT 4143 Score = 98.7 bits (108), Expect = 2e-15 Identities = 153/219 (70%), Gaps = 0/219 (0%) Strand=Plus/Minus Query 151886 GAGTCTGAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCT 151945 ||| | |||||| ||||| || |||||||| || ||||||||||| || | | || | Sbjct 4817 GAGACGGAGGACGAGATGGAGGGTAGACTCCTTCTGGATGTTGTAGTCCGAGAGGGTGCG 4758 Query 151946 CCCATCTTCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTC 152005 ||||| || || || |||||||| || || | ||| ||||| | | || || || Sbjct 4757 GCCATCCTCGAGCTGCTTGCCGGCGAAAATGAGACGCTGTTGGTCGGGGGGAATGCCCTC 4698 Query 152006 CTTTTCTTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGT 152065 ||| || || || || ||||| |||| | | |||| || | || || || || || Sbjct 4697 CTTGTCCTGGATCTTGGTCTTGACGTTCTCAATGGTGTCGGAGCCTTCGACCTCGAGGGT 4638 Query 152066 AATAGTTTTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104 || || ||||| || | ||||| ||||||| ||||| Sbjct 4637 GATGGTCTTGCCAGTCAAGGTCTTGACGAAGATTTGCAT 4599 >seq374 Length=102525 Score = 120 bits (132), Expect = 7e-22 Identities = 158/219 (72%), Gaps = 0/219 (0%) Strand=Plus/Minus Query 151886 GAGTCTGAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCT 151945 ||| | ||||||||| || ||||| ||||| || || ||||||||||||| | ||| | Sbjct 867 GAGACGGAGGACAAGGTGGAGAGTGGACTCCTTCTGAATGTTGTAATCGGAAAGAGTGCG 808 Query 151946 CCCATCTTCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTC 152005 || || || || || ||||| ||||| || | ||| || || | | || || || Sbjct 807 GCCGTCCTCGAGCTGCTTGCCGGCAAAGATGAGACGCTGTTGATCGGGGGGAATGCCCTC 748 Query 152006 CTTTTCTTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGT 152065 ||| |||||||| || ||||| |||| | | |||| || | ||| || || ||||| Sbjct 747 CTTGTCTTGAATCTTAGTCTTGACGTTCTCAATGGTGTCCGAGCCCTCAACCTCCAGAGT 688 Query 152066 AATAGTTTTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104 ||||| || || ||||| ||||| ||||| | ||||| Sbjct 687 GATAGTCTTTCCAGTGAGGGTCTTTACGAAAATTTGCAT 649 Score = 113 bits (124), Expect = 1e-19 Identities = 152/212 (72%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 151893 AGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCT 151952 ||||| || || ||||| ||||| || |||||||||||||| | | ||| | || || Sbjct 632 AGGACGAGGTGGAGAGTGGACTCCTTCTGGATGTTGTAATCAGAAAGAGTGCGGCCGTCC 573 Query 151953 TCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCT 152012 || || || ||||| ||||| || | ||| ||||| | | || || ||||| || Sbjct 572 TCGAGCTGCTTGCCGGCAAAGATGAGACGCTGTTGGTCGGGGGGAATACCCTCCTTGTCC 513 Query 152013 TGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTT 152072 || || ||| ||||| |||| | | | || || | ||| || || | |||||| || Sbjct 512 TGGATCTTTGTCTTGACGTTCTCAATGGTATCGGAGCCCTCAACCTCCAAAGTAATGGTC 453 Query 152073 TTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104 ||||| ||||||||||| ||||| | ||||| Sbjct 452 TTGCCAGTGAGAGTCTTTACGAAAATTTGCAT 421 >seq1210 Length=15033 Score = 107 bits (118), Expect = 4e-18 Identities = 155/219 (71%), Gaps = 0/219 (0%) Strand=Plus/Plus Query 151886 GAGTCTGAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCT 151945 ||| | ||| || | || || || ||||| || ||||||||||| || | | ||| | Sbjct 12701 GAGACGGAGCACCAAGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCCGAAAGAGTGCG 12760 Query 151946 CCCATCTTCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTC 152005 || || || || || ||||||||||| || | ||| ||||| | | |||||| || Sbjct 12761 GCCGTCCTCGAGCTGCTTGCCGGCGAAGATCAGACGCTGTTGGTCGGGGGGGATTCCCTC 12820 Query 152006 CTTTTCTTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGT 152065 ||| || || || || ||||| |||| | |||| || | ||| || ||||| || Sbjct 12821 CTTGTCCTGGATCTTGGCCTTGACGTTCTCGATCGTGTCCGATCCCTCAACCTCAAGGGT 12880 Query 152066 AATAGTTTTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104 || || ||||| ||||||||||| || |||| ||||| Sbjct 12881 GATGGTCTTGCCTGTGAGAGTCTTTACAAAGATTTGCAT 12919 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1153668132561417