Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acytostelium_20ellipticum_20[genbank_20GCA_5F900092235.1_202017-01- 02] 10,327 sequences; 62,160,181 total letters Query= NC_031935.1 Length=186386 Score E Sequences producing significant alignments: (Bits) Value seq553 91.5 2e-13 seq244 87.8 2e-12 seq117 86.0 7e-12 seq2070 82.4 9e-11 >seq553 Length=5624 Score = 91.5 bits (100), Expect = 2e-13 Identities = 66/75 (88%), Gaps = 1/75 (1%) Strand=Plus/Plus Query 17858 AGGGGAATTAGCTCAGTTGG-TAGAGCGCCTGCTTTGCAAGCAGGATGTCAGCGGTTCGA 17916 ||||| |||||||||| ||| |||||||||||| ||||| |||||| |||| |||||||| Sbjct 2101 AGGGGGATTAGCTCAGCTGGCTAGAGCGCCTGCCTTGCACGCAGGAGGTCAACGGTTCGA 2160 Query 17917 GTCCGCTATTCTCCA 17931 |||| ||||||||| Sbjct 2161 CTCCGTTATTCTCCA 2175 >seq244 Length=125016 Score = 87.8 bits (96), Expect = 2e-12 Identities = 65/75 (87%), Gaps = 1/75 (1%) Strand=Plus/Plus Query 17858 AGGGGAATTAGCTCAGTTGG-TAGAGCGCCTGCTTTGCAAGCAGGATGTCAGCGGTTCGA 17916 ||||| |||||||||| ||| |||||||| ||| | ||| ||| || ||||||||||||| Sbjct 90254 AGGGGGATTAGCTCAGCTGGCTAGAGCGCTTGCCTGGCAGGCAAGAGGTCAGCGGTTCGA 90313 Query 17917 GTCCGCTATTCTCCA 17931 |||||||||||||| Sbjct 90314 CTCCGCTATTCTCCA 90328 >seq117 Length=76055 Score = 86.0 bits (94), Expect = 7e-12 Identities = 74/91 (81%), Gaps = 2/91 (2%) Strand=Plus/Plus Query 158114 ATATGGAAAGGTGGTCGAGTGGTTGATGGCTCTGGTCTTGAAAACCAGCGAA--GTGAGA 158171 ||| ||| || ||| |||| |||| | ||| | ||||||||||||| ||||| || | | Sbjct 75752 ATACGGAGAGATGGCCGAGCGGTTTAAGGCACCGGTCTTGAAAACCGGCGAAGGGTCAAA 75811 Query 158172 GCTTCCGTGGGTTCGAATCCCACCCTTTCCG 158202 |||||||||||||||||||||| || |||| Sbjct 75812 CCTTCCGTGGGTTCGAATCCCACTCTCTCCG 75842 >seq2070 Length=16073 Score = 82.4 bits (90), Expect = 9e-11 Identities = 63/75 (84%), Gaps = 0/75 (0%) Strand=Plus/Minus Query 158206 CGGGGTGTAGCTCAGTTTGGTAGAGCGCCGTCTTTGGGAGGCGGATGCCGTAGGTTCGAA 158265 ||||| ||||||||||||||||||||||| ||||||||| ||| | || |||||| | Sbjct 3198 CGGGGCGTAGCTCAGTTTGGTAGAGCGCCCGCTTTGGGAGCGGGAGGTCGCAGGTTCAAC 3139 Query 158266 TCCTATCACCCCGAC 158280 |||| || ||||||| Sbjct 3138 TCCTGTCGCCCCGAC 3124 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 596230224194320