Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acytostelium_20ellipticum_20[genbank_20GCA_5F900092235.1_202017-01- 02] 10,327 sequences; 62,160,181 total letters Query= NC_032255.1 Length=112536 Score E Sequences producing significant alignments: (Bits) Value seq374 132 3e-26 seq1971 129 4e-25 seq1210 109 4e-19 seq396 98.7 7e-16 >seq374 Length=102525 Score = 132 bits (146), Expect = 3e-26 Identities = 157/210 (75%), Gaps = 2/210 (1%) Strand=Plus/Minus Query 44129 ACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTCGTCC 44188 || ||||| || ||| |||||| |||||||||||||| | || ||| |||| || Sbjct 629 ACGAGGTGGAGAGTGGACTCCTTCTGGATGTTGTAATCAGAAAGAGTGCGGCCGTCCTCG 570 Query 44189 AGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGTT 44248 |||||||| ||||||||||| | |||||| || || | || | ||| ||||| ||| Sbjct 569 AGCTGCTTGCCGGCAAAGATGAGACGCTGTTGGTCGGGGGGAATACCCTCCTTGTCCTGG 510 Query 44249 ATCTTCTGCTTCAATGTTC-CTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCTT 44307 ||||| || | | |||| | ||||| |||| | || ||||||| ||||| ||||| Sbjct 509 ATCTT-TGTCTTGACGTTCTCAATGGTATCGGAGCCCTCAACCTCCAAAGTAATGGTCTT 451 Query 44308 TCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337 || ||||| ||||| ||||| |||||||| Sbjct 450 GCCAGTGAGAGTCTTTACGAAAATTTGCAT 421 Score = 132 bits (146), Expect = 3e-26 Identities = 157/210 (75%), Gaps = 2/210 (1%) Strand=Plus/Minus Query 44129 ACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTCGTCC 44188 || ||||| || ||| |||||| || ||||||||||||| || ||| |||| || Sbjct 857 ACAAGGTGGAGAGTGGACTCCTTCTGAATGTTGTAATCGGAAAGAGTGCGGCCGTCCTCG 798 Query 44189 AGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGTT 44248 |||||||| ||||||||||| | |||||| ||||| | || | || ||||| || Sbjct 797 AGCTGCTTGCCGGCAAAGATGAGACGCTGTTGATCGGGGGGAATGCCCTCCTTGTCTTGA 738 Query 44249 ATCTTCTGCTTCAATGTTC-CTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCTT 44307 ||||| ||| | |||| | |||||||| | | || ||||||| || || ||||| Sbjct 737 ATCTTAGTCTTGAC-GTTCTCAATGGTGTCCGAGCCCTCAACCTCCAGAGTGATAGTCTT 679 Query 44308 TCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337 ||| ||||||||||| ||||| |||||||| Sbjct 678 TCCAGTGAGGGTCTTTACGAAAATTTGCAT 649 Score = 107 bits (118), Expect = 1e-18 Identities = 152/211 (72%), Gaps = 2/211 (1%) Strand=Plus/Minus Query 44129 ACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTCGTCC 44188 || ||||| || ||| |||||| ||||| |||||||| | ||| ||| |||| || Sbjct 401 ACGAGGTGGAGAGTGGACTCCTTCTGGATATTGTAATCCGAGAGGGTGCGGCCGTCCTCA 342 Query 44189 AGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGTT 44248 || ||||| || || || || | ||||||||| || | || | || ||||| ||| Sbjct 341 AGTTGCTTTCCAGCGAAAATTAGACGCTGCTGGTCGGGGGGGATGCCCTCCTTGTCCTGG 282 Query 44249 ATCTTCTGCTTCAATGTTC-CTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCTT 44307 ||||| ||| | |||| | ||||| || | | ||| || || | || || ||||| Sbjct 281 ATCTTAGTCTTTAC-GTTCTCAATGGTATCCGAGCCTTCGACTTCGAGAGTGATGGTCTT 223 Query 44308 TCCCGTGAGGGTCTTCACGAAGATTTGCATG 44338 || ||||||||||| || |||||||||||| Sbjct 222 GCCAGTGAGGGTCTTGACAAAGATTTGCATG 192 >seq1971 Length=9940 Score = 129 bits (142), Expect = 4e-25 Identities = 156/210 (74%), Gaps = 2/210 (1%) Strand=Plus/Minus Query 44129 ACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTCGTCC 44188 || |||||||| ||| |||||| ||||||||||| |||| ||| ||| |||| || Sbjct 4579 ACGAGGTGAAGAGTGGACTCCTTCTGGATGTTGTAGTCGGAGAGGGTGCGGCCGTCCTCA 4520 Query 44189 AGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGTT 44248 || ||||| ||||||||||| | ||||||||| || | || | || ||||| ||| Sbjct 4519 AGTTGCTTGCCGGCAAAGATGAGACGCTGCTGGTCGGGGGGGATGCCCTCCTTGTCCTGG 4460 Query 44249 ATCTTCTGCTTCAATGTTC-CTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCTT 44307 ||||| ||| | |||| | |||||||| | | || ||||| | || || ||||| Sbjct 4459 ATCTTGGTCTT-GACGTTCTCGATGGTGTCCGAGCCCTCAACCTCGAGGGTGATGGTCTT 4401 Query 44308 TCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337 || || |||||||| |||||||| ||||| Sbjct 4400 GCCGGTCAGGGTCTTGACGAAGATCTGCAT 4371 Score = 122 bits (134), Expect = 6e-23 Identities = 155/211 (73%), Gaps = 2/211 (1%) Strand=Plus/Minus Query 44128 CACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTCGTC 44187 ||||| ||| || ||| |||||| |||||||||||||| | ||| ||| |||| || Sbjct 4352 CACCAAGTGGAGGGTGGACTCCTTCTGGATGTTGTAATCCGAGAGGGTGCGGCCGTCCTC 4293 Query 44188 CAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGT 44247 |||||||| || || || || | |||||| || || | || | |||||||| ||| Sbjct 4292 AAGCTGCTTTCCAGCGAAAATGAGACGCTGTTGGTCGGGGGGGATGCCTTCCTTGTCCTG 4233 Query 44248 TATCTTCTGCTTCAATGTTC-CTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCT 44306 ||||| ||| | |||| | |||||||| | | || ||||| | || || |||| Sbjct 4232 GATCTTGGTCTTGAC-GTTCTCGATGGTGTCCGAGCCCTCGACCTCGAGGGTGATGGTCT 4174 Query 44307 TTCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337 | || ||||||||||| |||||||| ||||| Sbjct 4173 TGCCGGTGAGGGTCTTGACGAAGATCTGCAT 4143 Score = 111 bits (122), Expect = 1e-19 Identities = 152/210 (72%), Gaps = 2/210 (1%) Strand=Plus/Minus Query 44129 ACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTCGTCC 44188 || |||||||| ||| |||||| ||||||||||| |||| || ||| |||| || Sbjct 5035 ACGAGGTGAAGAGTGGACTCCTTCTGGATGTTGTAGTCGGAAAGAGTGCGGCCGTCCTCG 4976 Query 44189 AGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGTT 44248 |||||||| ||||| || || | |||||| || || | || | || ||||| ||| Sbjct 4975 AGCTGCTTGCCGGCGAAAATGAGACGCTGTTGGTCGGGGGGGATTCCCTCCTTGTCCTGG 4916 Query 44249 ATCTTCTGCTTCAATGTTC-CTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCTT 44307 ||||| ||| | |||| | |||||||||| | || ||||| | || || ||||| Sbjct 4915 ATCTTGGTCTT-GACGTTCTCGATGGTGTCGGAGCCCTCAACCTCGAGAGTGATGGTCTT 4857 Query 44308 TCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337 || || | |||||| ||||| || ||||| Sbjct 4856 GCCAGTCAAGGTCTTGACGAAAATCTGCAT 4827 Score = 107 bits (118), Expect = 1e-18 Identities = 141/193 (73%), Gaps = 2/193 (1%) Strand=Plus/Minus Query 44146 CTCCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAA 44205 |||||| ||||||||||| || | ||| ||| | || || |||||||| ||||| || Sbjct 4790 CTCCTTCTGGATGTTGTAGTCCGAGAGGGTGCGGCCATCCTCGAGCTGCTTGCCGGCGAA 4731 Query 44206 GATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGT 44265 || | |||||| || || | || | || ||||| ||| ||||| ||| | || Sbjct 4730 AATGAGACGCTGTTGGTCGGGGGGAATGCCCTCCTTGTCCTGGATCTTGGTCTTGAC-GT 4672 Query 44266 TC-CTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCA 44324 || | |||||||||| | ||| ||||| | || || ||||| || || | |||||| | Sbjct 4671 TCTCAATGGTGTCGGAGCCTTCGACCTCGAGGGTGATGGTCTTGCCAGTCAAGGTCTTGA 4612 Query 44325 CGAAGATTTGCAT 44337 ||||||||||||| Sbjct 4611 CGAAGATTTGCAT 4599 Score = 98.7 bits (108), Expect = 7e-16 Identities = 139/193 (72%), Gaps = 2/193 (1%) Strand=Plus/Minus Query 44146 CTCCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAA 44205 |||||| ||||||||||| |||| || ||| |||| || |||||||| || || || Sbjct 4106 CTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGGCCGTCCTCAAGCTGCTTTCCAGCGAA 4047 Query 44206 GATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGT 44265 || | |||||| || || | || | || ||||| ||| ||||| ||| | || Sbjct 4046 AATGAGACGCTGTTGGTCGGGGGGGATTCCCTCCTTGTCCTGGATCTTGGTCTT-GACGT 3988 Query 44266 TC-CTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCA 44324 || | ||||| |||| |||||||| | || || ||||| || || |||||||| | Sbjct 3987 TCTCAATGGTATCGGATCCCTCCACCTCAAGGGTGATGGTCTTGCCGGTCAGGGTCTTGA 3928 Query 44325 CGAAGATTTGCAT 44337 |||| |||||||| Sbjct 3927 CGAAAATTTGCAT 3915 >seq1210 Length=15033 Score = 109 bits (120), Expect = 4e-19 Identities = 153/212 (72%), Gaps = 2/212 (1%) Strand=Plus/Plus Query 44128 CACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTCGTC 44187 ||||| ||| || ||| |||||| ||||||||||| || | || ||| |||| || Sbjct 12710 CACCAAGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCCGAAAGAGTGCGGCCGTCCTC 12769 Query 44188 CAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGT 44247 |||||||| ||||| ||||||| |||||| || || | || | || ||||| ||| Sbjct 12770 GAGCTGCTTGCCGGCGAAGATCAGACGCTGTTGGTCGGGGGGGATTCCCTCCTTGTCCTG 12829 Query 44248 TATCTTCTGCTTCAATGTTC-CTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCT 44306 ||||| || | | |||| | || ||||| | || ||||| | || || |||| Sbjct 12830 GATCTT-GGCCTTGACGTTCTCGATCGTGTCCGATCCCTCAACCTCAAGGGTGATGGTCT 12888 Query 44307 TTCCCGTGAGGGTCTTCACGAAGATTTGCATG 44338 | || ||||| ||||| || |||||||||||| Sbjct 12889 TGCCTGTGAGAGTCTTTACAAAGATTTGCATG 12920 >seq396 Length=82706 Score = 98.7 bits (108), Expect = 7e-16 Identities = 147/209 (70%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 44129 ACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTCGTCC 44188 || ||||| || ||| |||||| ||||| |||||||| | || ||| | || || Sbjct 78 ACGAGGTGGAGAGTGGACTCCTTCTGGATATTGTAATCAGAAAGGGTGCGGCCATCCTCA 137 Query 44189 AGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGTT 44248 || ||||| || || || |||| ||||||||| || | ||| | ||| ||||| || Sbjct 138 AGTTGCTTGCCAGCGAAAATCAGACGCTGCTGGTCAGGAGGAATACCCTCCTTGTCTTGA 197 Query 44249 ATCTTCTGCTTCAATGTTCCTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCTTT 44308 ||||| ||| | || | || || |||| || ||||| | || || ||||| Sbjct 198 ATCTTAGTCTTGACATTTTCGATAGTATCGGAACCCTCAACCTCTAGGGTGATGGTCTTG 257 Query 44309 CCCGTGAGGGTCTTCACGAAGATTTGCAT 44337 || || |||||||| || ||||||||||| Sbjct 258 CCAGTTAGGGTCTTTACAAAGATTTGCAT 286 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 359945091495759