Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acytostelium_20ellipticum_20[genbank_20GCA_5F900092235.1_202017-01- 02] 10,327 sequences; 62,160,181 total letters Query= NC_033775.1 Length=376207 Score E Sequences producing significant alignments: (Bits) Value seq1210 159 8e-34 seq1971 156 1e-32 seq374 156 1e-32 seq1077 140 8e-28 >seq1210 Length=15033 Score = 159 bits (176), Expect = 8e-34 Identities = 159/205 (78%), Gaps = 1/205 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 ||||| || || || ||||||||||| || || |||||||| ||||| || | || ||| Sbjct 12916 CAAATCTTTGTAAAGACTCTCACAGGCAAGACCATCACCCTTGAGGTTGAGGGATCGGAC 12857 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || |||||||||||||| ||||| |||||||| || |||||||| || ||||| || Sbjct 12856 ACGATCGAGAACGTCAAGGCCAAGATCCAGGACAAGGAGGGAATCCCCCCCGACCAACAG 12797 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || || ||||||||||| || |||||||| || || | |||||| | || || ||| || Sbjct 12796 CGTCTGATCTTCGCCGGCAAGCAGCTCGAGGACGGCCGCACTCTTTCGGACTACAACATC 12737 Query 178104 CAAAAAGAATCAACACTGCATCTTG 178128 || || || || || || || |||| Sbjct 12736 CAGAAGGAGTCCACCCTCCA-CTTG 12713 >seq1971 Length=9940 Score = 156 bits (172), Expect = 1e-32 Identities = 158/206 (77%), Gaps = 0/206 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || |||||||| || || | || || || || ||||| |||||||| || |||| ||| Sbjct 4830 CAGATTTTCGTCAAGACCTTGACTGGCAAGACCATCACTCTCGAGGTTGAGGGCTCCGAC 4889 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 ||||||||||||||||| ||||| |||||||| || |||||||| || ||||| || Sbjct 4890 ACCATCGAGAACGTCAAGACCAAGATCCAGGACAAGGAGGGAATCCCCCCCGACCAACAG 4949 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || || || |||||||| || |||||||| || || | |||||| |||| || ||| || Sbjct 4950 CGTCTCATTTTCGCCGGCAAGCAGCTCGAGGACGGCCGCACTCTTTCCGACTACAACATC 5009 Query 178104 CAAAAAGAATCAACACTGCATCTTGT 178129 || || || || || || || || || Sbjct 5010 CAGAAGGAGTCCACTCTTCACCTCGT 5035 Score = 150 bits (166), Expect = 4e-31 Identities = 157/205 (77%), Gaps = 1/205 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || || ||||| || || ||||| || || || |||||||||||||| || |||| ||| Sbjct 4146 CAGATCTTCGTCAAGACCCTCACCGGCAAGACCATCACCCTCGAGGTCGAGGGCTCGGAC 4205 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 ||||||||||||||||| ||||| |||||||| ||||| ||||| || ||||| || Sbjct 4206 ACCATCGAGAACGTCAAGACCAAGATCCAGGACAAGGAAGGCATCCCCCCCGACCAACAG 4265 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || || || ||||| ||||| ||||| || || || | || || | ||||| ||| || Sbjct 4266 CGTCTCATTTTCGCTGGAAAGCAGCTTGAGGACGGCCGCACCCTCTCGGATTACAACATC 4325 Query 178104 CAAAAAGAATCAACACTGCATCTTG 178128 || || || || || || || |||| Sbjct 4326 CAGAAGGAGTCCACCCTCCA-CTTG 4349 Score = 147 bits (162), Expect = 5e-30 Identities = 156/206 (76%), Gaps = 0/206 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 ||||||||||| || || || || || || || |||||||| |||||||| | || || Sbjct 3918 CAAATTTTCGTCAAGACCCTGACCGGCAAGACCATCACCCTTGAGGTGGAGGGATCCGAT 3977 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 ||||| ||||||||||| ||||| |||||||| || |||||||| || ||||| || Sbjct 3978 ACCATTGAGAACGTCAAGACCAAGATCCAGGACAAGGAGGGAATCCCCCCCGACCAACAG 4037 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || || || ||||| ||||| ||||| || || || | || || |||| || ||| || Sbjct 4038 CGTCTCATTTTCGCTGGAAAGCAGCTTGAGGACGGCCGCACCCTGTCCGACTACAACATC 4097 Query 178104 CAAAAAGAATCAACACTGCATCTTGT 178129 || || || || || || ||||| || Sbjct 4098 CAGAAGGAGTCTACCCTCCATCTCGT 4123 Score = 147 bits (162), Expect = 5e-30 Identities = 156/206 (76%), Gaps = 0/206 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 ||||| ||||| || || | || || || || |||||||||||||| ||| |||| ||| Sbjct 4602 CAAATCTTCGTCAAGACCTTGACTGGCAAGACCATCACCCTCGAGGTCGAAGGCTCCGAC 4661 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 ||||| ||||||||||| ||||| |||||||| || || || || || ||||| || Sbjct 4662 ACCATTGAGAACGTCAAGACCAAGATCCAGGACAAGGAGGGCATTCCCCCCGACCAACAG 4721 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || || || |||||||| || |||||||| ||||| | || || | || || ||| || Sbjct 4722 CGTCTCATTTTCGCCGGCAAGCAGCTCGAGGATGGCCGCACCCTCTCGGACTACAACATC 4781 Query 178104 CAAAAAGAATCAACACTGCATCTTGT 178129 || || || || || || ||||| || Sbjct 4782 CAGAAGGAGTCTACCCTCCATCTCGT 4807 Score = 141 bits (156), Expect = 2e-28 Identities = 155/206 (75%), Gaps = 0/206 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || || ||||| || || || || || || || |||||||||||||| || |||| ||| Sbjct 4374 CAGATCTTCGTCAAGACCCTGACCGGCAAGACCATCACCCTCGAGGTTGAGGGCTCGGAC 4433 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 ||||||||||||||||| ||||| |||||||| || || ||||| || |||||||| Sbjct 4434 ACCATCGAGAACGTCAAGACCAAGATCCAGGACAAGGAGGGCATCCCCCCCGACCAGCAG 4493 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || || ||||| ||||| || || || || || || | || || |||| || ||| || Sbjct 4494 CGTCTCATCTTTGCCGGCAAGCAACTTGAGGACGGCCGCACCCTCTCCGACTACAACATC 4553 Query 178104 CAAAAAGAATCAACACTGCATCTTGT 178129 || || || || || || || || || Sbjct 4554 CAGAAGGAGTCCACTCTTCACCTCGT 4579 >seq374 Length=102525 Score = 156 bits (172), Expect = 1e-32 Identities = 158/206 (77%), Gaps = 0/206 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 ||||||||||| || || ||||| ||||| || ||||| || ||||| || |||| ||| Sbjct 652 CAAATTTTCGTAAAGACCCTCACTGGAAAGACTATCACTCTGGAGGTTGAGGGCTCGGAC 711 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 ||||| ||||||||||| |||||||| ||||| || || || || || || || || Sbjct 712 ACCATTGAGAACGTCAAGACTAAGATTCAAGACAAGGAGGGCATTCCCCCCGATCAACAG 771 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || || ||||| ||||| || |||||||| || || | |||||| ||||||| ||| | Sbjct 772 CGTCTCATCTTTGCCGGCAAGCAGCTCGAGGACGGCCGCACTCTTTCCGATTACAACATT 831 Query 178104 CAAAAAGAATCAACACTGCATCTTGT 178129 || || || || || || || ||||| Sbjct 832 CAGAAGGAGTCCACTCTCCACCTTGT 857 Score = 147 bits (162), Expect = 5e-30 Identities = 156/206 (76%), Gaps = 0/206 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 ||||||||||| || |||||||| || || || || || | ||||| || |||| || Sbjct 424 CAAATTTTCGTAAAGACTCTCACTGGCAAGACCATTACTTTGGAGGTTGAGGGCTCCGAT 483 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 ||||| ||||||||||| |||||| |||||||| || || || || || ||||| || Sbjct 484 ACCATTGAGAACGTCAAGACAAAGATCCAGGACAAGGAGGGTATTCCCCCCGACCAACAG 543 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || || ||||| ||||| || |||||||| || || | |||||| | ||||| ||| || Sbjct 544 CGTCTCATCTTTGCCGGCAAGCAGCTCGAGGACGGCCGCACTCTTTCTGATTACAACATC 603 Query 178104 CAAAAAGAATCAACACTGCATCTTGT 178129 || || || || || || || || || Sbjct 604 CAGAAGGAGTCCACTCTCCACCTCGT 629 >seq1077 Length=16265 Score = 140 bits (154), Expect = 8e-28 Identities = 141/182 (77%), Gaps = 1/182 (1%) Strand=Plus/Plus Query 177947 AGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGACACCATCGAGAACGTCAAACAAAA 178006 ||| || || |||||||||||||| || |||| ||||| |||||||||||||| || Sbjct 5245 AGGTAAGACCATCACCCTCGAGGTTGAGGGCTCCGACACTATCGAGAACGTCAAGGCCAA 5304 Query 178007 GATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAACGACTTATCTTCGCCGGAAAACA 178066 ||| |||||||| || |||||||| || ||||| || || || ||||||||||| || || Sbjct 5305 GATCCAGGACAAGGAGGGAATCCCCCCCGACCAACAGCGCCTCATCTTCGCCGGCAAGCA 5364 Query 178067 GCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTCCAAAAAGAATCAACACTGCATCT 178126 |||||| || || | || ||| | || || ||| |||| || || || || || || || Sbjct 5365 GCTCGAGGACGGCCGCACCCTTTCGGACTACAACATCCAGAAGGAGTCGACCCTCCA-CT 5423 Query 178127 TG 178128 || Sbjct 5424 TG 5425 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1203571928682438