Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acytostelium_20ellipticum_20[genbank_20GCA_5F900092235.1_202017-01- 02] 10,327 sequences; 62,160,181 total letters Query= NC_033780.1 Length=144510 Score E Sequences producing significant alignments: (Bits) Value seq1971 136 4e-27 seq1210 134 1e-26 seq374 134 1e-26 seq1077 132 4e-26 seq426 93.3 4e-14 seq368 86.0 6e-12 >seq1971 Length=9940 Score = 136 bits (150), Expect = 4e-27 Identities = 167/228 (73%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 41635 GCCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGA 41694 ||| || || ||||| | || || || || ||| ||||||||| ||||| |||||||| Sbjct 5054 GCCACCACGGAGACGGAGGACGAGGTGAAGAGTGGACTCCTTCTGGATGTTGTAGTCGGA 4995 Query 41695 GAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGG 41754 || ||||| |||| |||||||||||||||||||| || || ||||||||||| | ||| Sbjct 4994 AAGAGTGCGGCCGTCCTCGAGCTGCTTGCCGGCGAAAATGAGACGCTGTTGGTCGGGGGG 4935 Query 41755 AACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGACACAGTGTCGCTCGACTCCAC 41814 | | |||||||||| ||| || ||| | | | |||||| ||| || Sbjct 4934 GATTCCCTCCTTGTCCTGGATCTTGGTCTTGACGTTCTCGATGGTGTCGGAGCCCTCAAC 4875 Query 41815 CTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862 ||| | || || || || || |||| ||||| |||||||||||||| Sbjct 4874 CTCGAGAGTGATGGTCTTGCCAGTCAAGGTCTTGACGAAAATCTGCAT 4827 Score = 131 bits (144), Expect = 2e-25 Identities = 169/231 (73%), Gaps = 8/231 (3%) Strand=Plus/Minus Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695 || || || ||||| | || ||||| || || ||||||||| ||||| ||||| ||| Sbjct 4825 CCTCCACGGAGACGGAGGACGAGATGGAGGGTAGACTCCTTCTGGATGTTGTAGTCCGAG 4766 Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755 |||||||| | || |||||||||||||||||||| || || ||||||||||| | |||| Sbjct 4765 AGGGTGCGGCCATCCTCGAGCTGCTTGCCGGCGAAAATGAGACGCTGTTGGTCGGGGGGA 4706 Query 41756 ACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACG-ACACA---GTGTCGCTCGACTC 41811 | || |||||||||| ||| || ||| |||| | || |||||| || Sbjct 4705 ATGCCCTCCTTGTCCTGGATCTTGGTCTT----GACGTTCTCAATGGTGTCGGAGCCTTC 4650 Query 41812 CACCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862 ||||| | || || || || || |||| ||||| ||||| || ||||| Sbjct 4649 GACCTCGAGGGTGATGGTCTTGCCAGTCAAGGTCTTGACGAAGATTTGCAT 4599 Score = 127 bits (140), Expect = 2e-24 Identities = 172/236 (73%), Gaps = 9/236 (4%) Strand=Plus/Minus Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695 || || || ||||| | || ||||| || || ||||||||| ||||| |||||||| Sbjct 4141 CCTCCACGGAGACGGAGGACGAGATGGAGGGTAGACTCCTTCTGGATGTTGTAGTCGGAC 4082 Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755 |||||||| |||| || |||||||| || ||||| || || ||||||||||| | ||| Sbjct 4081 AGGGTGCGGCCGTCCTCAAGCTGCTTTCCAGCGAAAATGAGACGCTGTTGGTCGGGGGGG 4022 Query 41756 ACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACG-ACACA---GTGTCGCTCGACTC 41811 | | |||||||||| ||| || ||| |||| | || || ||| ||| Sbjct 4021 ATTCCCTCCTTGTCCTGGATCTTGGTCTT----GACGTTCTCAATGGTATCGGATCCCTC 3966 Query 41812 CACCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT-GTTA 41866 |||||| | || || || || || ||||| ||||| |||||||| ||||| |||| Sbjct 3965 CACCTCAAGGGTGATGGTCTTGCCGGTCAGGGTCTTGACGAAAATTTGCATAGTTA 3910 Score = 127 bits (140), Expect = 2e-24 Identities = 167/230 (73%), Gaps = 6/230 (3%) Strand=Plus/Minus Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695 || || || ||||| | || || || || ||| ||||||||| ||||| ||||||||| Sbjct 4597 CCTCCACGGAGACGGAGGACGAGGTGAAGAGTGGACTCCTTCTGGATGTTGTAGTCGGAG 4538 Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755 |||||||| |||| || || ||||||||||| || || || ||||| ||||| | ||| Sbjct 4537 AGGGTGCGGCCGTCCTCAAGTTGCTTGCCGGCAAAGATGAGACGCTGCTGGTCGGGGGGG 4478 Query 41756 ACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGACACAGTGTCGCTCGA---CTCC 41812 | || |||||||||| ||| || ||| | | | ||||| ||| ||| Sbjct 4477 ATGCCCTCCTTGTCCTGGATCTTGGTCTTGACGTTCTCGATGGTGTC---CGAGCCCTCA 4421 Query 41813 ACCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862 ||||| | || || || || || ||||| ||||| ||||| |||||||| Sbjct 4420 ACCTCGAGGGTGATGGTCTTGCCGGTCAGGGTCTTGACGAAGATCTGCAT 4371 Score = 118 bits (130), Expect = 1e-21 Identities = 165/230 (72%), Gaps = 6/230 (3%) Strand=Plus/Minus Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695 || || || ||||| | ||||| || || ||| ||||||||| ||||| || || ||| Sbjct 4369 CCTCCACGGAGACGGAGCACCAAGTGGAGGGTGGACTCCTTCTGGATGTTGTAATCCGAG 4310 Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755 |||||||| |||| || |||||||| || ||||| || || ||||||||||| | ||| Sbjct 4309 AGGGTGCGGCCGTCCTCAAGCTGCTTTCCAGCGAAAATGAGACGCTGTTGGTCGGGGGGG 4250 Query 41756 ACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGACACAGTGTCGCTCGA---CTCC 41812 | || ||||||||| ||| || ||| | | | ||||| ||| ||| Sbjct 4249 ATGCCTTCCTTGTCCTGGATCTTGGTCTTGACGTTCTCGATGGTGTC---CGAGCCCTCG 4193 Query 41813 ACCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862 ||||| | || || || || || || || ||||| ||||| |||||||| Sbjct 4192 ACCTCGAGGGTGATGGTCTTGCCGGTGAGGGTCTTGACGAAGATCTGCAT 4143 >seq1210 Length=15033 Score = 134 bits (148), Expect = 1e-26 Identities = 171/233 (73%), Gaps = 2/233 (1%) Strand=Plus/Plus Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695 || || || ||||| | ||||| || || ||| ||||||||| ||||| ||||| || Sbjct 12693 CCACCACGGAGACGGAGCACCAAGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCCGAA 12752 Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755 || ||||| |||| |||||||||||||||||||| ||||| ||||||||||| | ||| Sbjct 12753 AGAGTGCGGCCGTCCTCGAGCTGCTTGCCGGCGAAGATCAGACGCTGTTGGTCGGGGGGG 12812 Query 41756 ACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGACACAGTGT-CGCTCGACTCCAC 41814 | | |||||||||| ||| || ||| | | | |||| || || ||| || Sbjct 12813 ATTCCCTCCTTGTCCTGGATCTTGGCCTTGACGTTCTCGATCGTGTCCGATC-CCTCAAC 12871 Query 41815 CTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCATGTTAT 41867 ||| | || || || || || || || |||||||| || || |||||| ||| Sbjct 12872 CTCAAGGGTGATGGTCTTGCCTGTGAGAGTCTTTACAAAGATTTGCATGCTAT 12924 >seq374 Length=102525 Score = 134 bits (148), Expect = 1e-26 Identities = 172/232 (74%), Gaps = 10/232 (4%) Strand=Plus/Minus Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695 || || || ||||| | || || || || ||| ||||||||||||||| || ||||| Sbjct 875 CCTCCACGGAGACGGAGGACAAGGTGGAGAGTGGACTCCTTCTGAATGTTGTAATCGGAA 816 Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755 || ||||| |||| ||||||||||||||||| || || || |||||||| || | |||| Sbjct 815 AGAGTGCGGCCGTCCTCGAGCTGCTTGCCGGCAAAGATGAGACGCTGTTGATCGGGGGGA 756 Query 41756 ACGCTCTCCTTGTCCATGATTTTTTG-CTTCAACGACG-ACACAGTGTCGCTCGA---CT 41810 | || |||||||| | ||| | || | ||| |||| | || || | ||| || Sbjct 755 ATGCCCTCCTTGT-CTTGAATCTTAGTCTT----GACGTTCTCAATGGTGTCCGAGCCCT 701 Query 41811 CCACCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862 | ||||||| || || || || || || || |||||||||||||| ||||| Sbjct 700 CAACCTCCAGAGTGATAGTCTTTCCAGTGAGGGTCTTTACGAAAATTTGCAT 649 Score = 127 bits (140), Expect = 2e-24 Identities = 168/231 (73%), Gaps = 8/231 (3%) Strand=Plus/Minus Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695 || || || || || | || || || || ||| ||||||||| ||||| || || || Sbjct 647 CCTCCACGGAGGCGAAGGACGAGGTGGAGAGTGGACTCCTTCTGGATGTTGTAATCAGAA 588 Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755 || ||||| |||| ||||||||||||||||| || || || ||||||||||| | |||| Sbjct 587 AGAGTGCGGCCGTCCTCGAGCTGCTTGCCGGCAAAGATGAGACGCTGTTGGTCGGGGGGA 528 Query 41756 ACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACG-ACACA---GTGTCGCTCGACTC 41811 | | |||||||||| ||| ||| ||| |||| | || || ||| ||| Sbjct 527 ATACCCTCCTTGTCCTGGATCTTTGTCTT----GACGTTCTCAATGGTATCGGAGCCCTC 472 Query 41812 CACCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862 ||||||| || || || || || || || |||||||||||||| ||||| Sbjct 471 AACCTCCAAAGTAATGGTCTTGCCAGTGAGAGTCTTTACGAAAATTTGCAT 421 Score = 125 bits (138), Expect = 7e-24 Identities = 114/144 (79%), Gaps = 0/144 (0%) Strand=Plus/Minus Query 41635 GCCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGA 41694 ||| || || ||||| | || ||||| || ||| |||||||||||||||||||||||| Sbjct 192 GCCTCCACGAAGACGGAGGACGAGATGGAGGGTGGACTCCTTCTGAATGTTATAGTCGGA 133 Query 41695 GAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGG 41754 || ||||| | || ||||| |||||||| ||||| || || ||||| ||||| | ||| Sbjct 132 AAGAGTGCGGCCATCCTCGAGTTGCTTGCCAGCGAAAATGAGACGCTGCTGGTCGGGGGG 73 Query 41755 AACGCTCTCCTTGTCCATGATTTT 41778 || || |||||||||| ||| || Sbjct 72 AATGCCCTCCTTGTCCTGGATCTT 49 Score = 91.5 bits (100), Expect = 1e-13 Identities = 106/143 (74%), Gaps = 0/143 (0%) Strand=Plus/Minus Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695 || || || || || | || || || || ||| ||||||||| || || || || ||| Sbjct 419 CCTCCACGGAGGCGAAGGACGAGGTGGAGAGTGGACTCCTTCTGGATATTGTAATCCGAG 360 Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755 |||||||| |||| || || ||||| || ||||| || || ||||| ||||| | ||| Sbjct 359 AGGGTGCGGCCGTCCTCAAGTTGCTTTCCAGCGAAAATTAGACGCTGCTGGTCGGGGGGG 300 Query 41756 ACGCTCTCCTTGTCCATGATTTT 41778 | || |||||||||| ||| || Sbjct 299 ATGCCCTCCTTGTCCTGGATCTT 277 >seq1077 Length=16265 Score = 132 bits (146), Expect = 4e-26 Identities = 118/148 (80%), Gaps = 0/148 (0%) Strand=Plus/Minus Query 41631 CACCGCCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGT 41690 ||||||| ||||| || || | ||||| || || || ||||||||| ||||| |||| Sbjct 5450 CACCGCCACCGCGCAGGCGGAGCACCAAGTGGAGGGTCGACTCCTTCTGGATGTTGTAGT 5391 Query 41691 CGGAGAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCG 41750 | || |||||||| |||| |||||||||||||||||||| || |||||||||||||| | Sbjct 5390 CCGAAAGGGTGCGGCCGTCCTCGAGCTGCTTGCCGGCGAAGATGAGGCGCTGTTGGTCGG 5331 Query 41751 CGGGAACGCTCTCCTTGTCCATGATTTT 41778 ||| | | |||||||||| ||| || Sbjct 5330 GGGGGATTCCCTCCTTGTCCTGGATCTT 5303 >seq426 Length=101737 Score = 93.3 bits (102), Expect = 4e-14 Identities = 101/134 (75%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695 || || || ||||| | || || || || ||| |||||||||||| || || || || Sbjct 60 CCTCCACGGAGACGGAGGACGAGGTGGAGAGTGGACTCCTTCTGAATATTGTAATCAGAA 119 Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755 |||||||| | || ||||| |||||||| ||||| || || ||||| ||||| | ||| Sbjct 120 AGGGTGCGGCCATCCTCGAGTTGCTTGCCAGCGAAAATTAGACGCTGCTGGTCAGGAGGA 179 Query 41756 ACGCTCTCCTTGTC 41769 | | ||||||||| Sbjct 180 ATACCCTCCTTGTC 193 >seq368 Length=23565 Score = 86.0 bits (94), Expect = 6e-12 Identities = 67/80 (84%), Gaps = 0/80 (0%) Strand=Plus/Minus Query 85804 TCGCACCTCGTTCCGGCCTCGCCAGCAAGCACGGTATCGACGTGGGCGCCGGGGTCATCG 85863 |||| ||||| || ||||||||| | ||| || ||||||||| || ||||| ||||||| Sbjct 5700 TCGCCCCTCGCTCTGGCCTCGCCTGGAAGAACTCTATCGACGTCGGAGCCGGCGTCATCG 5641 Query 85864 ACGCCGACTACCGCGGAAAC 85883 |||| |||||||| |||||| Sbjct 5640 ACGCGGACTACCGTGGAAAC 5621 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 462244322332400