Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acytostelium_20leptosomum_20[genbank_20GCA_5F900092245.1_202017-01- 02] 28,227 sequences; 57,256,845 total letters Query= NC_000852.5 Length=330611 Score E Sequences producing significant alignments: (Bits) Value seq43 149 1e-30 seq4789 87.8 4e-12 seq3143 87.8 4e-12 seq19 84.2 5e-11 >seq43 Length=202503 Score = 149 bits (164), Expect = 1e-30 Identities = 381/579 (66%), Gaps = 6/579 (1%) Strand=Plus/Minus Query 150607 TTGCTTCGTAGAACTTCCTAATCAGAACCGGGAATACATGTCCATTTTGTAGGTCATAAC 150666 |||| || | |||| | | ||||| |||||| |||||| |||||| | | ||| Sbjct 36035 TTGCCTCATGGAACCTGCGGATCAGCGCCGGGAGTACATGCGAGTTTTGTGGATGGTAAT 35976 Query 150667 GGTCGTTTGGGCCACTGAGGTTCGTCGGCATTACTGACACGAAATTACAACCGAATTGTT 150726 ||| || || | || || ||||| || || | ||||||||||||| | || Sbjct 35975 TGTCATTATACCCGTATAAATTGGTTGGCATGACGGAGATGAAATTACAACCGTACTGGG 35916 Query 150727 TTCTGTAGGCGTCGCACATTTCGATTCCGGCTATCTTCGCTATCGCGTATGGTTTGTTAG 150786 ||||||||||| ||||||| || ||||| || || || || || || |||| || | Sbjct 35915 CCCTGTAGGCGTCACACATTTTAATACCGGCAATTTTTGCAATGGCATAGGGTTCATTGG 35856 Query 150787 TAGGTTCGAGAAACCCGGTCATCAGGTATTCTTCTTTGATGGGGTTTGGGGATTCTTTCG 150846 | ||| || || || || | ||||||||||| || | ||| | ||||| | |||| Sbjct 35855 TTTCTTCCAGCAAGCCAGTAAGAAGGTATTCTTCCTTCAGGGGCTGTGGGGCTAACTTCG 35796 Query 150847 GGTATATACAGCTACTCCCGAGGAAAACGAGTTTTTTCACATTGAATGTTTT---AGAAG 150903 |||| ||||| || || ||||| | | ||||| | || |||| || Sbjct 35795 GGTAAATACAACTGGAACCCAGGAACATTAACTTTTTGA---TGCCGTTTTTCCATGACT 35739 Query 150904 CGTGGATAACGTTCGTTTGAATCATCAGGTTGTCACGAATAAAATCACCACCAAAAGAAT 150963 | ||||| || || | ||||| || || || || |||||| | | | | | Sbjct 35738 CATGGATCACATTGTTCTGAATAGCAAGATTTTCGTAAAGAAAATCTGCCCTGTAGGTGT 35679 Query 150964 TGTTTGCATGAATACCCCCTACTTTGGCAGCGGCGAGAAATACGTATTCTGGTGTTTCCA 151023 |||| ||| ||| || || |||||||| || ||||||||||| || || ||| ||||| Sbjct 35678 TGTTGGCAATAATTCCGCCCACTTTGGCCGCAGCGAGAAATACATACTCCGGTTTTTCCT 35619 Query 151024 TTTCGAAAAATGCGGTCACTTCTTGTTGATTGGTCAAATCGAGTTCTTTAGATGATCGGG 151083 |||| || || | | ||| | ||||||||| | || || | |||| |||| Sbjct 35618 TTTCAAAGAAATCACTTACTGCCTGTTGATTGCGGAGGTCCAGCTGGGCTGATGTCCGGG 35559 Query 151084 TGATGATATTTGTATAACCCTCTTTCTGTAGCAGTCTTACCAGCGAGCTTCCAACCATTC 151143 | | | ||| || |||| ||||| || || || | || || ||||||| Sbjct 35558 TCAAAAGATTATTAAAACCTTCTTTTTGCAGTTTTCGGTAAATCGCAGAACCCACCATTC 35499 Query 151144 CAGTATGACCAGCCACGTAGATTTTAGAGTGCTTATCCA 151182 || ||||| || || || ||||| ||||| || |||| Sbjct 35498 CACGGTGACCGGCAACATATATTTTTGAGTGTTTTTCCA 35460 >seq4789 Length=4571 Score = 87.8 bits (96), Expect = 4e-12 Identities = 63/73 (86%), Gaps = 0/73 (0%) Strand=Plus/Plus Query 165709 TGCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAG 165768 ||||||| |||||||||||||||||||| | || |||| | ||||||||||||||||| Sbjct 2611 TGCCCGTTTAGCTCAGTCGGTAGAGCGCACGGCTCTTAACCGTGTGGTCGTGGGTTCGAG 2670 Query 165769 CCCCACGATGGGC 165781 |||||| ||||| Sbjct 2671 CCCCACAGTGGGC 2683 >seq3143 Length=4653 Score = 87.8 bits (96), Expect = 4e-12 Identities = 63/73 (86%), Gaps = 0/73 (0%) Strand=Plus/Minus Query 165709 TGCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAG 165768 ||||||| |||||||||||||||||||| | || |||| | ||||||||||||||||| Sbjct 2815 TGCCCGTTTAGCTCAGTCGGTAGAGCGCACGGCTCTTAACCGTGTGGTCGTGGGTTCGAG 2756 Query 165769 CCCCACGATGGGC 165781 |||||| ||||| Sbjct 2755 CCCCACAGTGGGC 2743 >seq19 Length=770976 Score = 84.2 bits (92), Expect = 5e-11 Identities = 123/170 (72%), Gaps = 8/170 (5%) Strand=Plus/Plus Query 41244 GAGAAATTTTACTTTACACCAAGTAGCAATCCG-TATGAAGTTTTTGAAACAAAATTCGG 41302 ||||||||||| ||||| ||| | | | | ||| |||| ||| |||| || | | Sbjct 367801 GAGAAATTTTATTTTACCCCAGGC-GATTTAGGCTATAAAGTATTTAAAACCAAGTATGC 367859 Query 41303 GAAAATGGGTGTGCTGATTTGCTGGGATCAGTGGTTCTCTGAAGCAGCGAAATGTCTG-- 41360 ||||| |||||||||||||||||||| ||||||| | |||||||| | | ||| Sbjct 367860 CAAAATTGGTGTGCTGATTTGCTGGGACCAGTGGTATCCCGAAGCAGC---ACGGCTGAC 367916 Query 41361 -GCTCTAGAAGGCGCTGATTTTATTGTATACCCCACCGCCATCGGCTCGG 41409 || || || || |||||| | || ||||| ||||| ||||||| || Sbjct 367917 CGCGCTGATGGGTGCAGATTTTCTGGTTTACCCGACCGCAATCGGCTGGG 367966 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1057441429025010