Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acytostelium_20leptosomum_20[genbank_20GCA_5F900092245.1_202017-01- 02] 28,227 sequences; 57,256,845 total letters Query= NC_001266.1 Length=159857 Score E Sequences producing significant alignments: (Bits) Value seq19 192 6e-44 seq3533 154 2e-32 >seq19 Length=770976 Score = 192 bits (212), Expect = 6e-44 Identities = 589/895 (66%), Gaps = 27/895 (3%) Strand=Plus/Minus Query 15884 TTATCTTGTTTAGAAG-CAACACCCA--TTCTTTGGTAATCACTAACGCGTTTTTCGAAG 15940 ||||||| |||| | |||||||| || |||| ||||||| || ||||| || ||| Sbjct 360881 TTATCTTCCGTAGAGGTCAACACCCCGCTTTTTTGATAATCACCCACACGTTTCTCAAAG 360822 Query 15941 AAGTTAGTTTTTCCCTCTAAAGATATATTTTCCATAAAATCAAAGGGATTAGTAGCTGAA 16000 || || ||||| || | | || || | |||||||||||||| ||||| || || | Sbjct 360821 AAATTGGTTTTGCCTTGCAGGGAGATCATCTCCATAAAATCAAACGGATTGGTGGCATGA 360762 Query 16001 AATATCTTAGAGTACCCCAGTTCCGTAACTAATCTATCTGCTACAAATTCTATATATTGA 16060 |||| || | || ||||||||| | |||| ||||| ||||| || ||||| || Sbjct 360761 TATATTTTGGTATAACCCAGTTCCTGCAGCCATCTGTCTGCAACAAACTCAATATACTGT 360702 Query 16061 CACATTAAGTCGCAATTAATTCCTATAAGTCGTACCGGAAGAGCTTTTGTTAAAAATTGT 16120 |||| | | ||| || || || || ||||| | || | ||| | ||||| Sbjct 360701 GACATCAGTTTTGCATTCATCCCGATCAGGGCAACCGGCAAGGCATCTGTAATAAATTCC 360642 Query 16121 TGTTCTATCACAACCGCTTCTTTAATGATATCGGTGGCTCGTGTTTCAGACG--GTGTAT 16178 | ||| || | ||||| || || || || || || || | | | || ||| Sbjct 360641 TTTTCGATTTCTACCGCGTCGCGGATAAT-TCCATGAA-CGACTTCCTGGCTCAGTTTAT 360584 Query 16179 GGTTTAGGTGTTTAAACATTAGACACGCGAAGTCGCAATGTAGTCCTTCGTCTCTGCTGA 16238 || || |||| | | || || || || || ||||| | || || |||||| | Sbjct 360583 TTTTGAGCATTTTATAAAGCAGGCAGGCAAATTCACAATGCATCCCCTCATCTCTGGAAA 360524 Query 16239 TAAGTTCGTTGGAAAAAGTTAACCCTGGCATTTTTCCTCGTTTCTTTAACCAGAATATCG 16298 | | || || ||| |||| ||||||||| |||| ||| || |||||||| |||| Sbjct 360523 TCAACTCATTACTAAAGGTTAGCCCTGGCATCAGGCCTCTTTTTTTCAACCAGAAGATCG 360464 Query 16299 CAGCAAATGACCCCGAA-AAGAATATACCCTCAACAGATGCAAAAGCGATTAATCGTTCC 16357 | || | | |||| ||||| || || || || | || ||||| | || ||||| Sbjct 360463 AA-CAGAAGCTCCCGCTGAAGAAAATGCCTTCCACTGCGGCGAAAGCCACCAAACGTTCG 360405 Query 16358 GCGTACGTAGCATCTTTATTACGAATCCATTTCTGTACCCATTCGGCTTTTTGTTTTATA 16417 || | | | | | | ||||| | | ||||||| ||||||| |||| | Sbjct 360404 GCAAAATTTCCGCCCTCA------ATCCAGCGCAATGCCCATTCTGCTTTTTTCTTTACA 360351 Query 16418 CAATCCATCGTTTCTATGGCCTTAAACAATTTCTCTTTTTCCTGAATATCGATTATATAC 16477 ||| | ||| |||| ||| | |||| | |||||||| | | ||| | ||||| Sbjct 360350 CAAGGAACCGTCTCTACGGCATGGAACAGCCTGTCTTTTTCTTCAGGATCTTTAATATAG 360291 Query 16478 GTATCAATCAGTAAACTGTACATTTCTGAGTGTATGTTCTCTATGGCTATCTGAAATCCA 16537 ||||| ||||| | || |||| ||||| ||||| || || ||||| || ||| Sbjct 360290 GTATCGATCAGCAGCGCATAGGTTTCAGAGTGGATGTTTTCCATCATGATCTGGAAGCCA 360231 Query 16538 TAGAAGCATCGAGCCTCCGCTATTTGTACTTC-CACGTAAAATCGTTCC--GCCAGGTTC 16594 || || || || || || | | |||||||| | | | || |||| || ||||| Sbjct 360230 TAAAAACAACGGGCTTCGGGAAGCTGTACTTCGCTCATGAA---GTTCACTGCAAGGTTT 360174 Query 16595 TCATTCACGATACCGTCACTTGCAGCAAAAAACGCCAATATGTGCTTAATGAAATATTTT 16654 ||||| || || |||||||||||||||||||| || | ||| || |||||||| Sbjct 360173 TCATTTACAATGCCGTCACTTGCAGCAAAAAAAGCAAGTATATGAGAAATGAAATGACGC 360114 Query 16655 TCGTCAG-ATGTAAGAATATGCCAATCTTTTAAATCTTTGGATATATCCACTTCTTCTGG 16713 ||| | | || |||| | | ||| | || || | || | || | |||||| | Sbjct 360113 TCGCCTGTATTTAAG-TTGTCCCAGTGCTTCTGGTCATCAGAAAGGTCAATTTCTTCAGC 360055 Query 16714 CGTCCAAAAGCTAGC--CACTGCCTTTTTATACATTTTCCAAATATCATTGTATT 16766 ||||| || || || |||| ||| |||||||||| ||| || ||| ||||| Sbjct 360054 GGTCCAGAAACTTGCTTCACT--CTTCTTATACATTTCCCAGATTTCAGGGTATT 360002 >seq3533 Length=1137 Score = 154 bits (170), Expect = 2e-32 Identities = 307/446 (69%), Gaps = 9/446 (2%) Strand=Plus/Minus Query 16189 TTTAAACATTAGACACGCGAAGTCGCAATGTAGTCCTTCGTCTCTGCTGATAAGTTCGTT 16248 |||| ||| | || || |||||||| ||||| || ||||| | ||||| || ||||| Sbjct 967 TTTATACAGCATGCAAGCAAAGTCGCAGTGTAGACCCTCGTCACGACTGATCAGCTCGTT 908 Query 16249 GGAAAAAGTTAACCCTGGCATTTTTCCTCGTTTCTTTAACCAGAATATCGCAGCAAATGA 16308 |||||| || | ||||||||| || | |||||| |||||| | || ||| |||| | Sbjct 907 GGAAAAGGTAAGGCCTGGCATTAAACCCCTTTTCTTCAACCAGTAGATGGCA-CAAAAGC 849 Query 16309 CCCCGAA-AAGAATATACCCTCAACAGATGCAAAAGCGATTAATCGTTCCGCGTACGTAG 16367 ||| ||||| ||||||||||| | ||||| || | || ||||| ||| | | | Sbjct 848 TGCCGCTGAAGAAGATACCCTCAACCGCAGCAAATGCCACCAAACGTTCGGCGAATGAAC 789 Query 16368 CATCTTTATTACGAATCCATTTCTGTACCCATTCGGCTTTTTGTTTTATACAATCCATCG 16427 | || | ||||| | | |||| || || || | |||| |||| Sbjct 788 AAGAGTTGGTG---ATCCAGCGCAGCGCCCACTCTGCCTTCTTCTTTACGGCGGGGATCG 732 Query 16428 TTTCTATGGCCTTAAACAATTTCTCTTT-TTCCTGAATATCGATTATATACGTATCAATC 16486 | ||||| || || || | | || ||| || || || | | || || || ||| Sbjct 731 TCTCTATCGCGTTGAAAAGCTCCTGTTTCTTTGTGC-TACTTTTAACGTATGTGTCGATC 673 Query 16487 AGTAAACTGTACATTTCTGAGTGTATGTTCTCTATGGCTATCTGAAATCCATAGAAGCAT 16546 | | |||||| | |||| ||| |||||||| || || |||||||| ||||||||||| Sbjct 672 AAAAGACTGTAGGTCTCTGCGTGAATGTTCTCAATCGCGATCTGAAAGCCATAGAAGCAG 613 Query 16547 CGAGCCTCCGCTATTTGTACTTC-CACGTAAAATCGTTCCGCCAGGTTCTCATTCACGAT 16605 || ||||| | ||||||||| || || | ||||| || || |||||||| ||||| Sbjct 612 CGGGCCTCTGGTATTTGTACCTCAGACAT-GAATCGAGTGGCGAGATTCTCATTGACGAT 554 Query 16606 ACCGTCACTTGCAGCAAAAAACGCCA 16631 |||||| ||| ||||| || |||| Sbjct 553 ACCGTCTGATGCGGCAAAGAATGCCA 528 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 511233953821640