Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acytostelium_20leptosomum_20[genbank_20GCA_5F900092245.1_202017-01- 02] 28,227 sequences; 57,256,845 total letters Query= NC_001317.1 Length=30624 Score E Sequences producing significant alignments: (Bits) Value seq614 96.9 7e-16 seq501 89.7 1e-13 seq7329 87.8 4e-13 >seq614 Length=6884 Score = 96.9 bits (106), Expect = 7e-16 Identities = 82/101 (81%), Gaps = 0/101 (0%) Strand=Plus/Minus Query 20930 AACAAAAAGGCCACTCGAGAGAGTGGCCTAACTGTATGTATTTACTACTTAAATTTGGTG 20989 |||||||| ||||||| ||||||| ||| | | || |||| || |||||||||| Sbjct 1937 AACAAAAAAGCCACTCTTTCGAGTGGCTTAATTATGTGATTTTAAATCTAAAATTTGGTG 1878 Query 20990 GCCCCTGCTGGACTTGAACCAGCGACCAAGCGATTATGAGT 21030 ||||||| ||| |||||||| ||||||||||||||||||| Sbjct 1877 GCCCCTGTTGGGTTTGAACCAACGACCAAGCGATTATGAGT 1837 >seq501 Length=12468 Score = 89.7 bits (98), Expect = 1e-13 Identities = 49/49 (100%), Gaps = 0/49 (0%) Strand=Plus/Minus Query 20982 ATTTGGTGGCCCCTGCTGGACTTGAACCAGCGACCAAGCGATTATGAGT 21030 ||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 4859 ATTTGGTGGCCCCTGCTGGACTTGAACCAGCGACCAAGCGATTATGAGT 4811 >seq7329 Length=1002 Score = 87.8 bits (96), Expect = 4e-13 Identities = 264/403 (66%), Gaps = 6/403 (1%) Strand=Plus/Minus Query 219 ACTCTTTGAACCTGATGACCTCCATGCCGAGCCAGTCGTTTACCTCCCTGAACCTGTCCT 278 |||| |||||||||| ||||| || ||||| ||||| |||| | ||| ||| Sbjct 405 ACTCCTTGAACCTGACAACCTCTTCACCCAGCCACTCGTTGACCTGGGCCAGCCTCGCCT 346 Query 279 GCAGCGGCGACAGGTCGTTA--CGCACAAATACCTTTGCCACTTTCT-CAACGTCACCGA 335 ||| |||| ||| ||||| ||| |||| ||| || | | | ||||| | | | Sbjct 345 GCAACGGCTCCAGCTCGTTGACCGCCCAAA--CCTCAGCAGCCTCCCGCAACGACCCAAA 288 Query 336 GCGAGCCGATATTCTCGGGCTTGCCGCCCATGAGCTGGAACGGTACGCGGTGCGCGTCCA 395 | ||| |||| ||| | |||||| | ||| || | ||| ||| | | Sbjct 287 ACCGCCCGCG-TTCTGCGGCACGATGCCCATCAACTGCGGTGGAATGCGCAACGCCGCGA 229 Query 396 TCAGGTCGGCGGCGCTGGCTTTCTTGATGTTGAAAAAGTCATCCTTTGTGGCGACCTCGC 455 ||| ||| | |||| || ||||| | || || ||||| | || ||||||| Sbjct 228 GCAGATCGTCACGGCTGATGTTTTTGATCGAGCTGAATTCGTCCTTGGCCGCAACCTCGC 169 Query 456 TCAGTGGCACGATTTTAATGCCGTCCGGTTTTCCATTGGGAGCGTAGAAAAACAGGTTTT 515 ||| || | || | ||||||||| || || || ||||| | ||||||||| Sbjct 168 TCACCGGGATGAGCTGAATGCCGTCTTTCTTGCCTGCCGGCGCGTACACAAACAGGTTGC 109 Query 516 TAAAATTGCCGAGCCCTTTCGAGTTGCGCATCGCCTCGCGCAGCGATTCGACGTCGGTCG 575 ||| ||||| ||||||||||||| || || |||||| || |||| ||| Sbjct 108 GAAAGTTGCCTGGCCCTTTCGAGTTCTTCAGTGCGGTGCGCAGTGAGTCGATGTCCTCTT 49 Query 576 CGCTCTGCGCCGGGTCGGTCACATACATGATGTAACCCGCATG 618 | ||||||||| |||||||| |||| ||| |||| ||||| Sbjct 48 CCTTCTGCGCCGCGTCGGTCATGTACAGAATGAAACCGGCATG 6 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 97842392661164