Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acytostelium_20leptosomum_20[genbank_20GCA_5F900092245.1_202017-01- 02] 28,227 sequences; 57,256,845 total letters Query= NC_001611.1 Length=185578 Score E Sequences producing significant alignments: (Bits) Value seq19 284 1e-71 seq3533 201 1e-46 seq1043 156 5e-33 >seq19 Length=770976 Score = 284 bits (314), Expect = 1e-71 Identities = 806/1223 (66%), Gaps = 24/1223 (2%) Strand=Plus/Minus Query 53441 GCACCGTAATAAATGGTTTCGAAGATCTTCTTATTTAGATCTTGTGCTTCCAGGCTATCA 53500 ||| || ||||||| ||||| || || | ||||||| | || ||| | || ||| Sbjct 362637 GCAGCGAAATAAATCGTTTCAAAAATTTCTTTATTTAAAATTTTTGCCCCTTCACTTTCA 362578 Query 53501 AATGGATAATTTAAGAGAATAAACGCGTCTGCTAATCCTTGAACACCAATACCGATAGGT 53560 ||||| || | || ||||| || ||||| ||||| || ||||| | ||| | ||| Sbjct 362577 AATGGTAAACGCATCAGGATAAAAGCATCTGCCAATCCCTGTACACCTAAACCAACTGGT 362518 Query 53561 CTATGTCTCTTATTAGAGATTTCAGCTTCTGGAATAGGATAATAATTAATATCTATAATT 53620 || || | | | || || ||| |||||| | |||||||||||| ||| |||||| Sbjct 362517 CTGTGGCGCATGTTGGAATTTTTAGCTTCCTCTACCGGATAATAATTATGATCAATAATT 362458 Query 53621 TTATTGAGGTTTCTGACAATTACTTTGACCACATCCTTCAGTTTGAGAAAATCAAATTGT 53680 ||||| ||||| | | | | ||||| | | ||| || |||||| | | Sbjct 362457 TTATTCAGGTTCAGGGTAGCCTGATAGGTTACATCATATAATTTCTGATGATCAAACTCT 362398 Query 53681 CCATCTATTACAAACATGTTCAATGCAATAGATGCCAGATTACAAACGGCTACCTCAT-- 53738 || | || ||||| | ||| || | || ||||| ||||| || || ||||| | Sbjct 362397 CCGTTGATGACAAATCTTGGCAAAGCCAACGAGGCCAGGTTACATACAGCAACCTCGTCT 362338 Query 53739 TAGCATCCGCATATTGTATTATCTCAGTGCAAAGATTACTACACTTGATGGTTCCTAAAT 53798 | | | | ||| | ||| || || || ||||| || || |||||||||||||||| Sbjct 362337 TTGGAA--GTATACTCTATAATTTCTGTACAAAGGTTGGAACTTTTGATGGTTCCTAAAT 362280 Query 53799 TTTGTTGATTACTCTTTTTGTTACACGCATCCTTATAAAGAATGAATGGCGTACCAGTTT 53858 |||| || || || |||| ||||| ||||| | | | || || || |||| Sbjct 362279 TTTGCTGGTTGGATTTGCTGTTTGCTGCATCTTTATACAACAGATAAGGGGTTCCGGTTT 362220 Query 53859 CAATCTGGGATTCTATAATCGCTTTCCAGACGACACGAGCCTTTATTATAGATTT----G 53914 ||||||| || || | ||| || ||| | | | || |||| || | ||| | Sbjct 362219 CAATCTGTGAATCCAGAATGGCAAACCAAAGCTCTTGTGC-TTTA--ATGGTTTTACGGG 362163 Query 53915 TATCTCTTTTCTCTTTCGTATAGTGTATACAATCGTTCAAACTCGTCTCCCCAAACATTG 53974 | || || || ||||||| | ||| || || || || | || || || | Sbjct 362162 CACGTCCTT-CTTTTTCGTAACGCTCATATAAAGCATCGAATTCTGCACCA-AAGCAATC 362105 Query 53975 T-CCAATCCAGGACATTCATCCGGACACATCAACGACCACTCTCCGTCATCCTTCACTCG 54033 | ||| ||| || ||||| ||||| | || ||| ||||||| || | || | Sbjct 362104 TGCCAGTCCCGGGGCTTCATGAGGACAGAATAAACTCCAGTCTCCGTTTTCTTCTACCCT 362045 Query 54034 TTTCATAAAGAGATCAGGAATCCAAAGAGCTATA-AATAGATCTCTGGTTCTATGTTCCT 54092 | |||| || || ||| | |||||| || ||| |||| |||||||| | | |||| | Sbjct 362044 TCTCATGAACAGGTCACATACCCAAAGGGC-ATAGAATAAATCTCTGGCACGAAGTTCTT 361986 Query 54093 CGTTTCCTGTATTCTTTTTA---AGATCGAGGAACGCCATAATATCAGAATGCCACGGTT 54149 | || || || |||||| || || || || || | ||| | |||||| || | Sbjct 361985 CTTTACC---ATGGTTTTTACGCAGGTCCAGAAAACTCAGCACATCTGCATGCCATGGCT 361929 Query 54150 CCAAGTATATGGTCATAACTCCAGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGG 54209 ||| ||| |||| | | | || ||||| ||| ||||| || | || | |||| Sbjct 361928 CCAGGTAAATGGCAAAAGCACCTTTACGTTTACCTCCACCCTGGTCCACATAACGGGCGG 361869 Query 54210 TGTTATTATAAACTCTCAACATTGGAATAATACCATTGGATGCACCATTGGTCCCGGAGA 54269 | | ||| | ||| ||||||| || | ||| |||||| | || || || || | Sbjct 361868 TATCGTTAAATACTTTCAACATAGGTACAATCCCATTGCTGGTCCCGTTTGTTCCACCAA 361809 Query 54270 TATAGCTTCCACTGGCACGAATATTACTAATTGATAGACCTATCCCCCCTGCCATTTTAG 54329 |||| ||| ||||||| || ||| || || ||| || || ||||| ||| | Sbjct 361808 TATAAGATCCCGTGGCACGGATGTTATGGATGCTTAAACCAATACCACCTGCGCTTTGTG 361749 Query 54330 AGATTAATGCGCATCGTTTTAACGTATCATAGATGCCCTCTATACTATCATCCATCATGT 54389 | ||| ||| | ||||||| ||||| || || || || ||||| || ||| |||| Sbjct 361748 AAATTTTAGCGGTTTGTTTTAAAGTATCGTAAATTCCTTCAATACTGTCGTCCTGCATGG 361689 Query 54390 TAAGTAGAAAACAGCTAGACATTTGGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAG 54449 | |||| ||| ||| ||||||||| | | || | ||||||||||| || || | Sbjct 361688 TCAGTAAAAAGCAGGAAGACATTTGAGGTTTAGGGGTAGCTGCATTAAATAAAGTTGGGG 361629 Query 54450 AAGCGTGCGTAAACCATTTTTCAGAAAGTAGATTGTACGTCTCGATAGCTGAGTCTATAT 54509 || ||||||||||| ||| | || || ||||| | || || || |||| Sbjct 361628 TTGCATGCGTAAACCAGCGCTCACTCATCAGGTTATACGTTGCAATCGCACTTTCAATAT 361569 Query 54510 CCCATTGATGAATTCCTACTGCGACACGCATTAACATGTGCTGAGGTCTTTCAACGATCT 54569 | || ||||| ||||| || |||||||| |||| || || || | ||| || || | Sbjct 361568 CTTCTTTGTGAATCCCTACGGCAACACGCATAAACAAATGTTGCGGGCGTTCTACAAT-T 361510 Query 54570 TGTTGTT-TATTTTCAGCAAGTAGGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTAT 54628 ||| || ||||||||||| ||||||||||| | |||||||| |||||||| | | || Sbjct 361509 TGTCCTTCTATTTTCAGCAGATAGGATTTTTCAAGGGTTTTAAACCCAAAATAATCGAAT 361450 Query 54629 GAAAAGTCTCGTTCGTAAATAAT 54651 ||| || | || |||||||| Sbjct 361449 CCAAAATCCCTGTCATAAATAAT 361427 Score = 224 bits (248), Expect = 1e-53 Identities = 580/877 (66%), Gaps = 9/877 (1%) Strand=Plus/Minus Query 23842 TTTTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTACCTTCTAATGATATAT 23901 ||||||| || |||||||||||||| || || ||||| ||||| |||| | || || Sbjct 360853 TTTTTTGATAATCACCCACACGTTTCTCAAAGAAATTGGTTTTGCCTTGCAGGGAGATCA 360794 Query 23902 TTTCCATGAAATCGGATGGATTGGTAACATTATAGATTCTTTTAAATCCCAATTCAGAAA 23961 | ||||| ||||| | |||||||| ||| ||| ||| | || | |||| ||| | Sbjct 360793 TCTCCATAAAATCAAACGGATTGGTGGCATGATATATTTTGGTATAACCCAGTTCCTGCA 360734 Query 23962 TCAATCTATCTGCGACAAACTCCATATATGTTTTCATCATTTCACAATTCATTCCTATAA 24021 | |||| ||||| |||||||| ||||| | ||||| || |||||| || || | Sbjct 360733 GCCATCTGTCTGCAACAAACTCAATATACTGTGACATCAGTTTTGCATTCATCCCGATCA 360674 Query 24022 GTTTAACTGGAAGAGCCACAGTAAGAAATTCTTGTTCAATAGAGACCGCGTCTGTTATAA 24081 | ||| || | || | |||| |||||| | ||| || |||||||| |||| Sbjct 360673 GGGCAACCGGCAAGGCATCTGTAATAAATTCCTTTTCGATTTCTACCGCGTCGCGGATAA 360614 Query 24082 TAGATCTTACTGTTTCTTCACTCGGTGGATACAATAAATGTTTAAACATCAAACATGCGA 24141 | || ||| | ||| || || | |||| | | || || || | Sbjct 360613 TTCCATGAACGACTTCCTGGCTCAGTTTATTTTTGAGCATTTTATAAAGCAGGCAGGCAA 360554 Query 24142 AATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCA 24201 | || || || | ||||| ||||| ||| || || || ||| || || || |||| Sbjct 360553 ATTCACAATGCATCCCCTCATCTCTGGAAATCAACTCATTACTAAAGGTTAGCCCTGGCA 360494 Query 24202 TTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGATCCAGAA-AAGAAAATTCCT 24260 | ||||| | ||||| | ||| || || || || | | ||| | |||||||| ||| Sbjct 360493 TCAGGCCTCTTTTTTTCAACCAGAAGATCGAA-CAGAAGCTCCCGCTGAAGAAAATGCCT 360435 Query 24261 TCTACTGCCGCAAAGGCAATAAGTCTTTCTCCATAACCGGCGCTGTCATGTATCCACTTT 24320 || ||||| || || || | | | ||| || || ||| ||| ||||| Sbjct 360434 TCCACTGCGGCGAAAGCCACCAAACGTTCGGCAAAATTTCCGCCCTCA---ATCCAGCGC 360378 Query 24321 TGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATTGTCTCTATAGCATTAAAGAGATAG 24380 ||||| || || || || ||||||||||| | ||||||| |||| || || | Sbjct 360377 AATGCCCATTCTGCTTTTTTCTTTACACAAGGAACCGTCTCTACGGCATGGAACAGCCTG 360318 Query 24381 tttttttCATTACTATCTTTAACATATGTATCAATCAAAAGACTATACATTTCCGAATGA 24440 | |||||| | | |||||||| ||| ||||| |||| || ||| |||| || || Sbjct 360317 TCTTTTTCTTCAGGATCTTTAATATAGGTATCGATCAGCAGCGCATAGGTTTCAGAGTGG 360258 Query 24441 ATGTTTTCAATGGCCATTTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTGTACTTCT 24500 |||||||| || || || || || || ||||| | || |||| || ||||||||| Sbjct 360257 ATGTTTTCCATCATGATCTGGAAGCCATAAAAACAACGGGCTTCGGGAAGCTGTACTTCG 360198 Query 24501 ATACAAAATCGTT--CTGCTAAATTTTCATTCACTATTCCGTCACTGGCTGCAAAAAACG 24558 | || | ||| |||| | |||||||| || || |||||||| || |||||||| | Sbjct 360197 CT-CATGA-AGTTCACTGCAAGGTTTTCATTTACAATGCCGTCACTTGCAGCAAAAAAAG 360140 Query 24559 CCAATACATGTTTTATAAAATATTTTTCGTCTGGTGTTAGTTTATTCCAATCATTGATAT 24618 | | || ||| || |||| ||| ||| ||| || | ||| | || | Sbjct 360139 CAAGTATATGAGAAATGAAATGACGCTCGCCTGTATTTAAGTTGTCCCAGTGCTTCTGGT 360080 Query 24619 CTTTAGATATATCCACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTATACATAT 24678 | | ||| | || | |||||| | ||||| || ||| || ||| |||||||| | Sbjct 360079 CATCAGAAAGGTCAATTTCTTCAGCGGTCCAGAAACTTGCTTCACTCTTCTTATACATTT 360020 Query 24679 TCCAGATGTCATGATATTGAATTGGAAAAATAACAAA 24715 |||||| ||| | |||| ||| || |||| |||||| Sbjct 360019 CCCAGATTTCAGGGTATTTAATAGGCAAAAGAACAAA 359983 >seq3533 Length=1137 Score = 201 bits (222), Expect = 1e-46 Identities = 488/723 (67%), Gaps = 17/723 (2%) Strand=Plus/Minus Query 24008 ATTCATTCCTATAAGTTTAACTGGAAGAGCCACAGTAAGAAATTCTTGTTCAATAGAGAC 24067 ||||||||| || || | |||||| || | | || | ||| |||| || |||||| Sbjct 1081 ATTCATTCCAATTAGATCAACTGGCAGCGAATCTGTGATAAACTCTTTCTCGCAAGAGAC 1022 Query 24068 CGCGTCTGTTATAATAGATCTTACTGTTTCTT-CACTCGGTGGATACAATAAATGTTTAA 24126 ||||| || ||||| || ||| || | || | || | || | | |||| Sbjct 1021 AGCGTCGCGGATGATAGACTCTATAGTTGCTGGCTCTAGACGG-TGCACCAGCTTTTTAT 963 Query 24127 ACATCAAACATGCGAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAAA 24186 ||| || || || || |||||||||||||||||||| | ||| || | |||||||||| Sbjct 962 ACAGCATGCAAGCAAAGTCGCAGTGTAGACCCTCGTCACGACTGATCAGCTCGTTGGAAA 903 Query 24187 ACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGATCCAG 24246 | || || || ||||||| || | || || | ||| | |||| | |||| | | | | Sbjct 902 AGGTAAGGCCTGGCATTAAACCCCTTTTCTTCAACCAGTAGATGG-CACAAAAGCTGCCG 844 Query 24247 AA-AAGAAAATTCCTTCTACTGCCGCAAAGGCAATAAGTCTTTCTCC--AT-AACCGGCG 24302 ||||| || || || || || ||||| || | | | ||| | || ||| | | Sbjct 843 CTGAAGAAGATACCCTCAACCGCAGCAAATGCCACCAAACGTTCGGCGAATGAACAAGAG 784 Query 24303 CTGTCATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATTGTCTCT 24362 || || ||||| | ||||| || |||||||| ||||| || || |||||| Sbjct 783 TTGG--TG-ATCCAGCGCAGCGCCCACTCTGCCTTCTTCTTTACGGCGGGGATCGTCTCT 727 Query 24363 ATAGCATTAAAGAGATAGtttttttCATTACTATCTTTAACATATGTATCAATCAAAAGA 24422 || || || || || | | ||| | | ||| |||||| ||||| || ||||||||| Sbjct 726 ATCGCGTTGAAAAGCTCCTGTTTCTTTGTGCTACTTTTAACGTATGTGTCGATCAAAAGA 667 Query 24423 CTATACATTTCCGAATGAATGTTTTCAATGGCCATTTGAAATCCGTAGAAACATCTAGCC 24482 || || | || | |||||||| ||||| || || ||||| || ||||| || | ||| Sbjct 666 CTGTAGGTCTCTGCGTGAATGTTCTCAATCGCGATCTGAAAGCCATAGAAGCAGCGGGCC 607 Query 24483 TCGGTAATCTGTACTTCTATACA-AAATCGTTCTGCTAAATTTTCATTCACTATTCCGTC 24541 || | || ||||| || | ||| ||||| || | ||| ||||| || || ||||| Sbjct 606 TCTGGTATTTGTACCTC-AGACATGAATCGAGTGGCGAGATTCTCATTGACGATACCGTC 548 Query 24542 ACTGGCTGCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTCTGGTGTT-AGTT 24600 || ||||| || |||| |||| | ||||| | | ||||| || || || | Sbjct 547 TGATGCGGCAAAGAATGCCAGCACATTGGTGATAAAGTGTCGTTCGT-TGTCATTGAGCT 489 Query 24601 TATT---CCAATCATTGATATCTTTAGATATATCCACTTCTTCCACTGTCCAAAATGATG 24657 | || |||||| || ||||| || | || | ||| || ||||||| ||||| | Sbjct 488 TGTTCTCCCAATCGTTCATATCAGAAGCCAAGTCTAATTCCTCTGCTGTCCAGAATGAAG 429 Query 24658 CCTCTGCCTTTTTATACATATTCCAGATGTCATGATATTGAATTGGAAAAATAACAAATC 24717 | ||||| || || ||||||| ||| ||||| || || || || || | ||| |||| Sbjct 428 CTTCTGCTTTCTTGTACATATCCCATATGTCTGTATGTTTGATAGGGAAGAGAACGAATC 369 Query 24718 TAT 24720 ||| Sbjct 368 TAT 366 >seq1043 Length=1979 Score = 156 bits (172), Expect = 5e-33 Identities = 385/571 (67%), Gaps = 15/571 (3%) Strand=Plus/Plus Query 24127 ACATCAAACATGCGAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAAA 24186 ||| |||||| || || |||||||| | ||||||||| | ||| || | ||||| || | Sbjct 208 ACAGCAAACAGGCAAAGTCGCAGTGCAAACCCTCGTCACGACTGATCAGCTCGTTCGAGA 267 Query 24187 ACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGAT-CCA 24245 ||| | ||| |||||| || ||||| || |||||||| || || ||| | | ||| Sbjct 268 ACGACAAGCCGTGCATTAAACCGCGCTTCTTGAGCCAAAAGATCGA-GCAGAAACTGCCA 326 Query 24246 GAAAAGAAAATTCCTTCTACTGCCGCAAAGGCAATAAGTCTTTCTCC--ATAACCG-GCG 24302 |||||| || || || || || |||||||| | | | || | || | || ||| Sbjct 327 CTAAAGAAGATACCCTCGACAGCGGCAAAGGCGACCAAACGCTCGGCGAATGAGCGAGCG 386 Query 24303 CTGTCATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATTGTCTCT 24362 || || ||||| ||||| ||||| ||||| || || || || ||||| Sbjct 387 TTGG--TG-ATCCAGCGCAAGGCCCAGTCGGCTTTCTTCTTAACGGCGGGGATAGTCTCG 443 Query 24363 ATAGCATTAAAGAGATAGtttttttCATTACTATCTTTAACATATGTATCAATCAAAAGA 24422 || || | ||||| ||| || | | | | || | || || || || | |||| Sbjct 444 ATGGCGTGGAAGAGCATGTTCTTCTTCTCGGTGTTCTTGATGTAGGTGTCGATGAGAAGA 503 Query 24423 CTATACATTTCCGAATGAATGTTTTCAATGGCCATTTGAAATCCGTAGAAACATCTAGCC 24482 || || | || || || ||||| || ||||| ||||| ||||| |||||||| | ||| Sbjct 504 CTGTAGGTCTCAGAGTGGATGTTCTCGATGGCGATTTGGAATCCATAGAAACAACGTGCC 563 Query 24483 TCGGTAATCTGTACTTCTATACAA-AATCGTTCTGCTAAATTTTCATTCACTATTCCGTC 24541 || | ||||| || || | ||| || ||| || | ||| || || || || ||||| Sbjct 564 TCTGGGATCTGCACCTC-AGACATGAAGCGTGTGGCAAGATTCTCGTTGACAATGCCGTC 622 Query 24542 ACTGGCTGCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTC-TGGTGTTAGTT 24600 || ||||| || |||| ||| || | ||||| | |||| | || | || | Sbjct 623 CGATGCGGCAAAGAAGGCCAGTACGTGAGTGATAAAGTGACGCTCGTTATCGT-TCAGCT 681 Query 24601 TATTC---CAATCATTGATATCTTTAGATATATCCACTTCTTCCACTGTCCAAAATGATG 24657 | ||| ||||| | || || | | | ||| | ||||| ||||||| || |||| Sbjct 682 TGTTCTCCCAATCGTGAATGTCGCTTGCCAGATCGATCTCTTCGGCTGTCCAGAAAGATG 741 Query 24658 CCTCTGCCTTTTTATACATATTCCAGATGTC 24688 |||||||||| || ||||| ||||| ||||| Sbjct 742 CCTCTGCCTTCTTGTACATGTTCCAAATGTC 772 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 593512112754960