Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acytostelium_20leptosomum_20[genbank_20GCA_5F900092245.1_202017-01- 02] 28,227 sequences; 57,256,845 total letters Query= NC_002331.1 Length=178733 Score E Sequences producing significant alignments: (Bits) Value seq1351 118 1e-21 seq4240 113 5e-20 seq3382 95.1 1e-14 seq13839 89.7 6e-13 seq8653 84.2 3e-11 >seq1351 Length=12664 Score = 118 bits (130), Expect = 1e-21 Identities = 165/230 (72%), Gaps = 6/230 (3%) Strand=Plus/Minus Query 42957 CCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCC 43016 ||||| | | ||| | |||||| || | ||| |||||||||||| ||||| ||| | Sbjct 4930 CCTCCACGGAGACGGAGCACCAAGTGAAGGGTGGACTCCTTTTGAATGTTGTAGTCACCG 4871 Query 43017 AGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGC 43076 || || || | || || |||||||| || || || ||||| ||||||||||||| || Sbjct 4870 AGGGTGCGTCCATCCTCAAGCTGCTTGCCGGCAAAGATGAGACGCTGCTGGTCGGGTGGA 4811 Query 43077 ACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTCGCCACCGTGTCGCTCGAT---TCC 43133 | | ||||||||| ||| || |||| || | | |||||| ||| || Sbjct 4810 ATACCCTCCTTGTCTTGGATCTTGGCCTTGACGTTCTCGATGGTGTCG---GATCCCTCG 4754 Query 43134 ACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 43183 || || | |||||||| || || ||||| ||||| |||||||||||||| Sbjct 4753 ACCTCCAGAGTGATGGTCTTTCCAGTTAGAGTCTTCACAAAGATTTGCAT 4704 Score = 98.7 bits (108), Expect = 1e-15 Identities = 160/230 (70%), Gaps = 6/230 (3%) Strand=Plus/Minus Query 42957 CCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCC 43016 ||||| | | ||| | ||||| || | ||| |||||||||||| ||||| ||| | Sbjct 4702 CCTCCACGGAGACGAAGAACCAAGTGAAGGGTGGACTCCTTTTGAATGTTGTAGTCACCG 4643 Query 43017 AGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGC 43076 || || || | || || || ||||| || || || || | || |||||||||| || Sbjct 4642 AGGGTGCGTCCATCCTCAAGTTGCTTGCCGGCAAAGATCAAACGTTGCTGGTCGGGTGGG 4583 Query 43077 ACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTCGCCACCGTGTCGCTCGAT---TCC 43133 | | |||||||||| ||| || |||| || | | |||||| ||| || Sbjct 4582 ATACCCTCCTTGTCCTGGATCTTGNNCTTGACGTTCTCGATGGTGTCG---GATCCCTCG 4526 Query 43134 ACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 43183 || |||| |||||||| ||||| || || ||||| || ||||| ||||| Sbjct 4525 ACCTCGAGGGTGATGGTCTTGCCAGTGAGGGTCTTGACGAAGATCTGCAT 4476 Score = 96.9 bits (106), Expect = 4e-15 Identities = 154/217 (71%), Gaps = 8/217 (4%) Strand=Plus/Minus Query 42971 CAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTC 43030 ||| ||||| || | ||| |||||||||||| || || || | ||||| || | || Sbjct 5144 CAATACCAAGTGAAGGGTGGACTCCTTTTGAATGTTATAGTCGCCAAGAGTGCGACCATC 5085 Query 43031 ATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTC 43090 || |||||||| || || || ||||| ||||||||||||| || | | |||||||| Sbjct 5084 CTCAAGCTGCTTGCCGGCAAAGATGAGACGCTGCTGGTCGGGTGGGATTCCCTCCTTGT- 5026 Query 43091 CATGATTTTTTG-TTTGAGCGTCGCCACCGTGTC---GCTCGATTCCACATCGACCGTGA 43146 | ||| | || | |||| || | | ||||| || | || || || | |||| Sbjct 5025 CTTGAATCTTGGCCTTGACGTTCTCGATGGTGTCAGAGCCC---TCAACCTCAAGTGTGA 4969 Query 43147 TGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 43183 |||| ||||| || || ||||| || ||||| ||||| Sbjct 4968 TGGTCTTGCCAGTGAGGGTCTTGACGAAGATCTGCAT 4932 >seq4240 Length=2116 Score = 113 bits (124), Expect = 5e-20 Identities = 161/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 42957 CCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCC 43016 ||||| | | ||| | |||||| || | ||| |||||| ||||||||||| |||| Sbjct 1669 CCTCCACGGAGACGGAGCACCAAGTGAAGGGTGGACTCCTTCTGAATATTGTAGTCAGAG 1610 Query 43017 AGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGC 43076 ||||| || |||| || |||||||| || || || ||||| ||||||||||||| || Sbjct 1609 AGAGTGCGACCGTCCTCGAGCTGCTTTCCGGCAAAGATGAGACGCTGCTGGTCGGGTGGG 1550 Query 43077 ACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTCGCCACCGTGTCGCTCGATTCCACA 43136 | | |||||||||| ||| || |||| || | | ||||| ||| || Sbjct 1549 ATTCCCTCCTTGTCCTGGATCTTGGCCTTGACGTTCTCGATGGTGTCAGAGCCTTCGACC 1490 Query 43137 TCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 43183 || | |||||||| || || || | ||||| || ||||| ||||| Sbjct 1489 TCAAGGGTGATGGTCTTTCCAGTCAAAGTCTTGACGAAGATCTGCAT 1443 >seq3382 Length=4522 Score = 95.1 bits (104), Expect = 1e-14 Identities = 157/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 42957 CCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCC 43016 ||||| | | ||| | |||||| || | ||| ||||||||| || ||||| |||| Sbjct 4179 CCTCCACGGAGACGGAGCACCAAGTGAAGGGTGGACTCCTTTTGGATGTTGTAGTCAGAG 4120 Query 43017 AGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGC 43076 || || || |||| || | |||||| || || || ||||| ||||||||||||| || Sbjct 4119 AGGGTACGACCGTCCTCCAACTGCTTTCCGGCAAAGATGAGACGCTGCTGGTCGGGTGGG 4060 Query 43077 ACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTCGCCACCGTGTCGCTCGATTCCACA 43136 | | ||||||||| ||| || |||| || | | || ||| || || Sbjct 4059 ATTCCCTCCTTGTCTTGGATCTTGGCCTTGACGTTCTCGATGGTATCGGAACCCTCAACC 4000 Query 43137 TCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 43183 || | |||||||| || || || || ||||| || || |||||||| Sbjct 3999 TCAAGGGTGATGGTCTTTCCGGTCAGAGTCTTGACGAAAATTTGCAT 3953 >seq13839 Length=228 Score = 89.7 bits (98), Expect = 6e-13 Identities = 100/134 (75%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 42957 CCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCC 43016 ||||| | | ||| | |||||| || | ||| |||||||||||| ||||| ||| | Sbjct 156 CCTCCACGGAGACGGAGCACCAAGTGAAGGGTGGACTCCTTTTGAATGTTGTAGTCACCG 97 Query 43017 AGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGC 43076 || || || | || || |||||||| || || || ||||| ||||||||||||| || Sbjct 96 AGGGTGCGTCCATCCTCAAGCTGCTTGCCGGCAAAGATGAGACGCTGCTGGTCGGGTGGG 37 Query 43077 ACGCTCTCCTTGTC 43090 | | ||||||||| Sbjct 36 ATTCCCTCCTTGTC 23 >seq8653 Length=1535 Score = 84.2 bits (92), Expect = 3e-11 Identities = 163/237 (69%), Gaps = 8/237 (3%) Strand=Plus/Plus Query 42956 TCCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGC 43015 |||||| | | ||||| |||||| || | || |||||| ||||| ||||| || | Sbjct 193 TCCTCCACGGAGACGCAGCACCAAGTGGAGGGTAGACTCCTTCTGAATGTTGTAGTCGCC 252 Query 43016 CAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGG 43075 ||||| || |||| || || ||||| || || || || | || || || |||| || Sbjct 253 GAGAGTGCGACCGTCTTCAAGTTGCTTGCCGGCAAAGATCAAACGTTGTTGATCGGGTGG 312 Query 43076 CACGCTCTCCTTGTCCATGATTTTTTGT-TTGAGCGTCGCCACCGTGTC---GCTCGATT 43131 | | || ||||| ||| | |||| |||| || | | ||||| || | | Sbjct 313 GATACCTTCTTTGTCT-TGAATCTTTGCCTTGACGTTCTCGATAGTGTCAGAGCCC---T 368 Query 43132 CCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCATTTTTA 43188 | || || | |||||||| || || || | ||||||||||||||||||||| ||| Sbjct 369 CGACCTCTAGTGTGATGGTCTTTCCAGTCAATGTCTTTACAAAGATTTGCATTATTA 425 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 571615841307560