Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acytostelium_20leptosomum_20[genbank_20GCA_5F900092245.1_202017-01- 02] 28,227 sequences; 57,256,845 total letters Query= NC_002484.2 Length=56426 Score E Sequences producing significant alignments: (Bits) Value seq12773 140 1e-28 seq11225 102 3e-17 seq3523 100 1e-16 seq6347 87.8 6e-13 seq1200 84.2 8e-12 >seq12773 Length=2517 Score = 140 bits (154), Expect = 1e-28 Identities = 324/478 (68%), Gaps = 34/478 (7%) Strand=Plus/Plus Query 35947 CCGTCGTCGTCC------TCGCCGCGAGTGGTGATGTTCAGCAGTGCGGAAAGCACGTAA 36000 ||||||||||| |||||| || |||||||||||||| || | | |||||| Sbjct 179 CCGTCGTCGTCGCGGATATCGCCG---GTCGTGATGTTCAGCAGCGCACACATCACGTAG 235 Query 36001 CGCTTGCCGTAGCTGACCGATGATCCAAGAGACTGAACGGCGTTCTTGCTGCCACT--CG 36058 |||||||| ||| | |||||| |||| || ||| ||| || |||| || | || Sbjct 236 CGCTTGCCATAGGTAGTCGATGAGCCAACAGCCTGTACGTCG---TTGCGACCTTTTCCG 292 Query 36059 -TGTCTAGCGGAACGAGCATCGTCGTCTGCTCTCGGTGTCCGGCGCAGTGCATCAGAATT 36117 | || | ||| | | ||| || || ||||| ||||| || | | |||||||| ||| Sbjct 293 ATATCAATCGGCAGGCTCATGGTGGTTTGCTCGCGGTGGCCACCCCGGTGCATCAAGATT 352 Query 36118 CCAGTAAC-CGAAACGCCAGTCTGAACAGTCTCGACGCGGAAGCTCACTGCGAAACCGAA 36176 ||||| || | | |||| | | | | | || || |||| | | || || ||| Sbjct 353 CCAGTGACACTGATCGCC-TTTTCAGCGTTTTCCACCTTGAAGGTGATGGCAAACCCGTG 411 Query 36177 CCGCTGCATGATCGGCTTCACGATGTCGTTGATGTCTTCGAAGGTCGCGTAGTTGCTGCG 36236 | |||||||||||||||||| | ||| |||||| |||| || |||||| | | | Sbjct 412 CTGCTGCATGATCGGCTTCAAGGTGTGTGTGATGTGGTCGAGCGTGGCGTAGGAGTTTCC 471 Query 36237 CTTTTGGCCGTTGACGGTGATAGCG-CCACGCTCGGCAATGNNNNNNNNTTCGCTTTGCA 36295 | || ||| |||| || ||| |||| ||| | || |||| Sbjct 472 TGTGTGTAGGTTAACGGCACCTTCGAACACAGTCGG-GATG---------TTGCACTGCA 521 Query 36296 TGGCGGCCATGGATGCGTTGAACTCAGCCT-CTGCGCTGC--GGGACTGCATCCGTTCGT 36352 | ||||||| | || ||||| ||| | || ||| | ||||||||| || |||| Sbjct 522 TTTCGGCCATTGCGGCATTGAA---AGCTTGCTCAGCTTCCTTGGACTGCATGCGCTCGT 578 Query 36353 GCATGGCCATCAGGCGCTCCATTTTCTCGATGTCACACGCCGGATCGGCTGCGGCACG 36410 ||||||||| |||||||||||| ||||||||||| || | |||||||| || ||||| Sbjct 579 GCATGGCCAGCAGGCGCTCCATCTTCTCGATGTCGCAGGTTGGATCGGCGGCAGCACG 636 >seq11225 Length=5908 Score = 102 bits (112), Expect = 3e-17 Identities = 169/244 (69%), Gaps = 0/244 (0%) Strand=Plus/Plus Query 48914 TGAAGCTGTTGGCCAGGGAGATCGGATGCCCGGTGCTCCCGCTCTGCCAGCTCAACCGCG 48973 ||||| |||||||| ||| || ||||| || || |||| | ||| | |||| Sbjct 1506 TGAAGGGGTTGGCCAAAGAGTTCAATTGCCCCGTCATCGCGCTATCGCAGTTGTCCCGCC 1565 Query 48974 GATGTGAGTCTCGCCCGGATAAGCGCCCGGTGCTCAGCGACCTACGCGAGTCCGGCGCCA 49033 |||||| || || | |||||||| ||| | ||| | || ||||||||||| | Sbjct 1566 AGTGTGAGCAGCGGCCCAACAAGCGCCCTGTGAACGCAGACTTGCGGGAGTCCGGCGCGA 1625 Query 49034 TCGAGCAAGACGCGGACATCGTGATGTTCGTGTACCGCGATGAAGTCTATTTCCCGAACA 49093 ||||||| |||||||||||| | |||||||| || || || || ||||| |||| ||| Sbjct 1626 TCGAGCAGGACGCGGACATCATCATGTTCGTCTATCGAGACGAGGTCTACAACCCGGACA 1685 Query 49094 GCGATAAGAAGGGCATCGGCGAAATCCTGATCCGGAAGAATCGGGACGGAGAAATCGGCA 49153 || | ||||| | | ||| | | || | ||| | ||| |||| |||| ||| | Sbjct 1686 CTGAGTACAAGGGGGTTGCCGAGTTGATCCTCGGCAAGCACCGGAACGGTGAAACCGGTA 1745 Query 49154 GCGT 49157 ||| Sbjct 1746 CCGT 1749 >seq3523 Length=12220 Score = 100 bits (110), Expect = 1e-16 Identities = 130/177 (73%), Gaps = 2/177 (1%) Strand=Plus/Minus Query 48943 CCGGTGCTCCCGCTCTGCCAGCTCAACCGCG-GATGTGAGTCTCGCCCGGATAAGCGCCC 49001 |||||| | |||| | ||||| |||||| | || ||| ||| | ||||||||||| Sbjct 5551 CCGGTGGTGGCGCTGTCGCAGCTTAACCGCTCGCTG-GAGCAGCGCGCCGATAAGCGCCC 5493 Query 49002 GGTGCTCAGCGACCTACGCGAGTCCGGCGCCATCGAGCAAGACGCGGACATCGTGATGTT 49061 ||| | |||||| || ||||||||| | ||||| || || || ||| | | ||||| Sbjct 5492 GGTCAACTCCGACCTGCGTGAGTCCGGCTCTATCGAACAGGATGCCGACTTAATCATGTT 5433 Query 49062 CGTGTACCGCGATGAAGTCTATTTCCCGAACAGCGATAAGAAGGGCATCGGCGAAAT 49118 | | ||||| ||||| |||||| | |||||||||| || ||||||| ||||| Sbjct 5432 CATTTACCGTGATGAGGTCTATCACGAGAACAGCGATCTTAAAGGCATCGCGGAAAT 5376 >seq6347 Length=2804 Score = 87.8 bits (96), Expect = 6e-13 Identities = 158/231 (68%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 48923 TGGCCAGGGAGATCGGATGCCCGGTGCTCCCGCTCTGCCAGCTCAACCGCGGATGTGAGT 48982 |||||| ||| || ||||||||| | | || | ||||||||||| |||| Sbjct 108 TGGCCAAGGAATTCAACTGCCCGGTGGTTGCCCTGTCGCAGCTCAACCGATCTCTTGAGC 167 Query 48983 CTCGCCCGGATAAGCGCCCGGTGCTCAGCGACCTACGCGAGTCCGGCGCCATCGAGCAAG 49042 || ||| | || |||||| | | |||| | || || ||||| || |||||||| | Sbjct 168 AGCGTCCGAACAAACGCCCGATCAACTCCGACTTGCGGGAATCCGGAGCGATCGAGCAGG 227 Query 49043 ACGCGGACATCGTGATGTTCGTGTACCGCGATGAAGTCTATTTCCCGAACAGCGATAAGA 49102 | || ||| | | |||||||| ||||| || || || ||| |||| | | ||| | | Sbjct 228 ATGCTGACGTGATCATGTTCGTATACCGGGACGAGGTGTATCACCCGGAGACCGAGCATA 287 Query 49103 AGGGCATCGGCGAAATCCTGATCCGGAAGAATCGGGACGGAGAAATCGGCA 49153 | ||||||| |||||| | ||| | || | || |||| |||||||| Sbjct 288 AAGGCATCGCTGAAATCATTATCGGTAAACAGCGTAACGGGCCAATCGGCA 338 >seq1200 Length=6265 Score = 84.2 bits (92), Expect = 8e-12 Identities = 54/59 (92%), Gaps = 0/59 (0%) Strand=Plus/Plus Query 27036 ACAGGATTTAGGTTCCAGCGCCGCAAGGCGTGAGAGTTCGAGTCTCTCCGTCCGCACCA 27094 || ||||||||||||||||||||||||| || ||||||||||||||| | ||||||||| Sbjct 5281 ACTGGATTTAGGTTCCAGCGCCGCAAGGTGTAAGAGTTCGAGTCTCTTCATCCGCACCA 5339 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 180381116765112