Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acytostelium_20leptosomum_20[genbank_20GCA_5F900092245.1_202017-01- 02] 28,227 sequences; 57,256,845 total letters Query= NC_002593.1 Length=100999 Score E Sequences producing significant alignments: (Bits) Value seq3382 89.7 3e-13 seq3381 89.7 3e-13 >seq3382 Length=4522 Score = 89.7 bits (98), Expect = 3e-13 Identities = 147/212 (69%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 34178 AGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGACAGCTGACGGTCGTCG 34237 ||||||| ||| | || || || || ||||||||||| || || ||| |||| Sbjct 4164 AGCACCAAGTGAAGGGTGGACTCCTTTTGGATGTTGTAGTCAGAGAGGGTACGACCGTCC 4105 Query 34238 TCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGCACGCTCTCCTTGTCG 34297 ||||||||||| || || || ||||| |||||||||||| || | | ||||||||| Sbjct 4104 TCCAACTGCTTTCCGGCAAAGATGAGACGCTGCTGGTCGGGTGGGATTCCCTCCTTGTCT 4045 Query 34298 GCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGACGTCCACCGTGATGGTT 34357 ||||| ||| | | | || | ||||| || || || | |||||||| Sbjct 4044 TGGATCTTGGCCTTGACGTTCTCGATGGTATCGGAACCCTCAACCTCAAGGGTGATGGTC 3985 Query 34358 TTGCCGGTGAGAGTTTTCACAAAGATCTGCAT 34389 || ||||| ||||| || || || || ||||| Sbjct 3984 TTTCCGGTCAGAGTCTTGACGAAAATTTGCAT 3953 Score = 87.8 bits (96), Expect = 1e-12 Identities = 134/191 (70%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 34199 TCTTTCTGTATGTTGTAGTCGGACAGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAA 34258 || ||||| || |||||||| || || ||| | || ||||||||||| || || || Sbjct 4371 TCCTTCTGGATATTGTAGTCAGAGAGGGTACGACCATCCTCCAACTGCTTTCCGGCAAAG 4312 Query 34259 ATGAGCCGCTGCTGGTCGACGGGCACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATCG 34318 ||||| || ||||||||| || | | ||||||||| ||||| ||| | | Sbjct 4311 ATGAGACGTTGCTGGTCGGGTGGAATTCCCTCCTTGTCCTGGATCTTGGCCTTGACGTTT 4252 Query 34319 GCTATCGAATCGGTCGATTCGACGTCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACA 34378 | || | |||| ||||| || | |||||||| ||||| ||||| || || || Sbjct 4251 TCAATGGTGTCGGATCCCTCGACCTCGAGGGTGATGGTCTTGCCAGTGAGGGTCTTGACG 4192 Query 34379 AAGATCTGCAT 34389 ||||||||||| Sbjct 4191 AAGATCTGCAT 4181 >seq3381 Length=12314 Score = 89.7 bits (98), Expect = 3e-13 Identities = 156/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 34163 CCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGAC 34222 || || || || || || |||| ||| | || |||||||| ||||||||||| Sbjct 1185 CCACCACGGAGTCTAAGGACCAAGTGAAGGGTGGACTCTTTCTGGATGTTGTAGTCACCG 1126 Query 34223 AGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGC 34282 || ||| | || ||||| ||||| || || |||||||| |||||||||||| || Sbjct 1125 AGGGTACGACCATCTTCCAATTGCTTTCCAGCAAAAATGAGACGCTGCTGGTCGGGTGGA 1066 Query 34283 ACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGACG 34342 | | |||||||| ||||| ||| | || | || | || | || || Sbjct 1065 ATACCTTCCTTGTCTTGAATCTTAGCCTTGACATTCTCAATGGTGTCCGAGCCCTCAACC 1006 Query 34343 TCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCAT 34389 || | ||||| || ||||| |||||||| || |||||||||||||| Sbjct 1005 TCAAGAGTGATCGTCTTGCCAGTGAGAGTCTTGACAAAGATCTGCAT 959 Score = 86.0 bits (94), Expect = 4e-12 Identities = 155/227 (68%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 34163 CCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGAC 34222 || || || || || || |||| ||| | |||| ||| || || |||||||||||| Sbjct 1641 CCTCCACGGAGTCTGAGAACCAAGTGGAGAGTAGATTCCTTTTGGATGTTGTAGTCGCCA 1582 Query 34223 AGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGC 34282 || ||| | || || | ||||||||| || || || | |||||||||||| || Sbjct 1581 AGAGTGCGGCCATCCTCGAGCTGCTTGCCAGCAAAGATCAAACGCTGCTGGTCGGGTGGG 1522 Query 34283 ACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGACG 34342 | | |||||| || |||||| ||||| | | || | ||| | ||| || Sbjct 1521 ATACCCTCCTTATCTTGGATCTTTGCCTTTACGTTCTCAATGGTATCAGAGCCTTCAACC 1462 Query 34343 TCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCAT 34389 || | ||||| || || || || ||||| || || ||||||||||| Sbjct 1461 TCGAGAGTGATAGTCTTACCAGTAAGAGTCTTGACGAAGATCTGCAT 1415 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 322960857881120