Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acytostelium_20leptosomum_20[genbank_20GCA_5F900092245.1_202017-01- 02] 28,227 sequences; 57,256,845 total letters Query= NC_002687.1 Length=335593 Score E Sequences producing significant alignments: (Bits) Value seq19 147 5e-30 seq13335 132 1e-25 seq200 84.2 5e-11 >seq19 Length=770976 Score = 147 bits (162), Expect = 5e-30 Identities = 291/431 (68%), Gaps = 0/431 (0%) Strand=Plus/Plus Query 248782 CTGGACGGCGCGATTGACTACGGCAAAGATTTGGAGTACGATTTCTTTGCTTTCAAAACG 248841 |||||| || | ||| || | || ||||| | | ||||| |||| || ||||| Sbjct 361415 CTGGACAGCACCATTATTTATGACAGGGATTTTGGATTCGATTATTTTGGGTTTAAAACC 361474 Query 248842 CTGGAGAAATCGTATCTCCTCAAAATTGATGGCAAGATCGTGGAACGAATTCAGCACATG 248901 || || ||||| ||||| || ||||| || || | || || ||||| || || || Sbjct 361475 CTTGAAAAATCCTATCTGCTGAAAATAGAAGGACAAATTGTAGAACGCCCGCAACATTTG 361534 Query 248902 TTGATGCGAGTGGCTGTCGGGATTCACAAGGATGACATAGAGAGCGTGCTCGAGACGTAC 248961 || ||||| || || || ||||||||||| || || || || || | | | | ||||| Sbjct 361535 TTTATGCGTGTTGCCGTAGGGATTCACAAAGAAGATATTGAAAGTGCGATTGCAACGTAT 361594 Query 248962 ACCGGAATGAGTGAACGCTGGATGACACATGCCACACCGACGCTCTTCAACGCCGGTACC 249021 | | |||||||| |||||| | || ||||| || || || | || || || | |||| Sbjct 361595 AACCTGATGAGTGAGCGCTGGTTTACGCATGCAACCCCAACTTTATTTAATGCAGCTACC 361654 Query 249022 GTCAACAATCAGCTGAGCTCGTGCTTTCTTCTTGCCATGCAAGACGACTCTGTCGACGGC 249081 || ||| || || |||||| | || ||||||| |||||| | | || || Sbjct 361655 CCTAAACCTCAAATGTCTTCCTGCTTTTTACTGACCATGCAGGACGACAGTATTGAAGGA 361714 Query 249082 ATTTATGACACGCTTAAACAGACGGCGAAGATTTCTAAATTCGCGGGCGGAATCGGTCTC 249141 ||||| || || | ||||| || || || ||||| || ||| || || || ||| | Sbjct 361715 ATTTACGATACTTTAAAACAAACCGCTAAAATTTCACAAAGCGCAGGTGGTATTGGTTTA 361774 Query 249142 TCCGTCTCCAACATCCGAGCGAAGGGTTCGTACATCAAAGGTACAAATGGGGTCAGTGAT 249201 | || |||||||| || | ||| || || || || ||||| ||| ||| || Sbjct 361775 AGCATCCATAACATCCGTGCCACGGGATCTTATATTGGTGGAACAAACGGGACCAGCAAT 361834 Query 249202 GGTATCGTACC 249212 || || ||||| Sbjct 361835 GGGATTGTACC 361845 >seq13335 Length=4250 Score = 132 bits (146), Expect = 1e-25 Identities = 494/762 (65%), Gaps = 33/762 (4%) Strand=Plus/Minus Query 248986 ACACATGCCACACCGACGCTCTTCAACGCCGGTACCGTCAACAATC-AGCTGAGCTCGTG 249044 || |||||||| || ||||| |||||| | || || | ||| | || || || || Sbjct 2766 ACGCATGCCACGCCCACGCTGTTCAACTCGGGCAC-GCCAATGCCCCAGATGTCGTCATG 2708 Query 249045 CTTTCTTCTTGCCATGCAAGACGACTCTGTCGACGGCATTTATGACACGCTTAAACAGAC 249104 ||| || | ||| | ||||||||| |||| || || || || || || || ||| Sbjct 2707 CTTCCTGGTGCAGATGAAGGACGACTCTATCGATGGAATCTACGATACTCTGAAGCAGTG 2648 Query 249105 GGCGAAGATTTCTAAATTCGCGGGCGGAATCGGTCTCTCCGTCTCCAACATCCGAGCGAA 249164 || ||| || | || || || |||||| | || || ||| ||||| || Sbjct 2647 CGCATTGATCAGCAAGTCGGCCGGAGGCATCGGTTTGTCGGTGCACAAGATCCGTGCCGC 2588 Query 249165 GGGTTCGTACATCAAAGGTACAAATGGGGTCAGTGATGGTATCGTACCCCTCCTTCGATG 249224 | | ||||||||| || || || || | | || | || || | || || Sbjct 2587 GCGCTCGTACATCCGCGGCACCAACGGTACCTCGAACGGACTGGTTCCAATGCTGCGTGT 2528 Query 249225 CTTTGAGTCCACCGCCAGGTTCATCAACCAGGCCGGGCGC---CGAAAGGGGTCGTTCGC 249281 |||| | ||| || | | | |||||| || || || ||||| | || || Sbjct 2527 CTTTAACGACACTGCACGTTATGTTGACCAGGGTGGCGGCAAGCGCAAGGGCGCCTTTGC 2468 Query 249282 CATGTATTTGGAAGTGTGGCACGCCGATATATTGGAGTTCCTGGACTTGAAAAAGAACAA 249341 ||| || |||| ||||||||||| || |||||||||| ||| || |||||| | Sbjct 2467 CATCTACCTGGAGCCATGGCACGCCGACATCATGGAGTTCCTTGACCTGCGCAAGAACCA 2408 Query 249342 CGGCAACGAGCTCATGAGAGCGCGTGACCTCTTCTACGGCCTGTGGGTCTCCGACTTGTT 249401 |||||| ||| ||| | || || ||||||||||||| || ||| |||| |||||||| Sbjct 2407 CGGCAAGGAGGAGATGCGTGCTCGCGACCTCTTCTACGCACTCTGGATCTCTGACTTGTT 2348 Query 249402 CATGCGCCGCGTCAAGGCCGACGGCGATTGGACGCTTCTTTCTCCGTCCGACGCCCCGGA 249461 |||| ||||| ||||| ||| ||| ||| | || | | ||| ||| || || | Sbjct 2347 TATGCAGCGCGTTGAGGCCAACGCCGACTGGTCACTCTTCTGCCCGAACGAGGCGCCAGG 2288 Query 249462 CCTCATCGATCTACAC----GGCGCCGACTTCGACCAAGCCTATAAGAAATACGAATCCA 249517 ||| || |||| |||| | ||| || || ||| | |||||| | | Sbjct 2287 CCTTGCCG----ACACCTGGGGCGAGAAGTTCAACGAACTCTACCTGCGCTACGAAGCGA 2232 Query 249518 ---ACGGCATCG---GCAAGACAATCAAGGCTC-GGACCCTT--TTTGCGAAGGTGGTGG 249568 |||| ||| || || |||||||| | |||| | || ||| | | | Sbjct 2231 CACCCGGCCTCGCACGCCGCACCATCAAGGCACAAGACCTGTGGTTCTCGA---TCCTCG 2175 Query 249569 AGTCCCAGATAGAGACAGGGGGGCCGTATTATTTGTTCAAAGACGCGTGCAACGCCAAGA 249628 |||||||||| |||||||| ||||| | | ||| ||| ||||||| | |||| Sbjct 2174 AGTCCCAGATCGAGACAGGCACCCCGTACATCCTATACAAGGACTCGTGCAATGGCAAGT 2115 Query 249629 GTAACCAACGGCATCTTGGTACCATCCGCTCGTCAA--ATCTCTGTGCA--GAGGTGATT 249684 ||||||| | | || || || || |||||| | | | ||||||| ||| | || Sbjct 2114 CCAACCAACAGAACCTCGGCACTAT---CTCGTCGAGCAAC-CTGTGCACCGAGATCATC 2059 Query 249685 CAATACTCGTCCAAGGAGGAGATTGCCGTCTGCAACCTGGCA 249726 || ||| |||| |||||| | || ||||||||||| ||| Sbjct 2058 CAGTACACGTCGCCAGAGGAGGTGGCTGTCTGCAACCTTGCA 2017 >seq200 Length=13366 Score = 84.2 bits (92), Expect = 5e-11 Identities = 103/141 (73%), Gaps = 0/141 (0%) Strand=Plus/Minus Query 115416 CTGAATCGGTTCGATGATTTTGGTGGAGTTGTTGCAGACTATGATGAACCGCGTCGTGCT 115475 ||| || ||||||||||| |||||||| | |||||| | | || || || ||| Sbjct 2048 CTGGATTGGTTCGATGATCTTGGTGGACTGGTTGCACGCCAGTGCAAAACGGGTGGTGGA 1989 Query 115476 CGAGTAAACATCCATGATCCGTCGCAGCGCCTGGAAAGCACCAGGTGTCATCGAGTCTGC 115535 ||| || | ||||||| || |||| ||| || ||||| | |||||| |||||| Sbjct 1988 CGAATAGATCTCCATGACACGACGCAACGCTTGCTGTGCACCGGCTGTCATACTGTCTGC 1929 Query 115536 CTCGTCGAGAACGACAATCTT 115556 ||||||||||| || |||||| Sbjct 1928 CTCGTCGAGAATGATAATCTT 1908 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1073378063321536