Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acytostelium_20leptosomum_20[genbank_20GCA_5F900092245.1_202017-01- 02] 28,227 sequences; 57,256,845 total letters Query= NC_002816.1 Length=123500 Score E Sequences producing significant alignments: (Bits) Value seq8653 125 6e-24 seq3381 122 7e-23 seq1351 122 7e-23 seq4240 116 3e-21 seq3382 113 4e-20 >seq8653 Length=1535 Score = 125 bits (138), Expect = 6e-24 Identities = 153/209 (73%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 45128 ACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCC 45187 |||||||| || || |||||||||||||||||||||| || |||| |||| || Sbjct 212 ACCAAGTGGAGGGTAGACTCCTTCTGAATGTTGTAGTCGCCGAGAGTGCGACCGTCTTCA 271 Query 45188 AGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCA 45247 ||||| || ||||| || ||||| || ||||| ||||| || | ||| || ||||| | Sbjct 272 AGTTGCTTGCCGGCAAAGATCAAACGTTGTTGATCGGGTGGGATACCTTCTTTGTCTTGA 331 Query 45248 ATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTG 45307 || ||| ||| || | | | |||| ||||| ||||| | || || ||||| Sbjct 332 ATCTTTGCCTTGACGTTCTCGATAGTGTCAGAGCCCTCGACCTCTAGTGTGATGGTCTTT 391 Query 45308 CCCGTCAGAGTCTTCACAAAGATTTGCAT 45336 || |||| ||||| |||||||||||||| Sbjct 392 CCAGTCAATGTCTTTACAAAGATTTGCAT 420 Score = 95.1 bits (104), Expect = 1e-14 Identities = 136/192 (71%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 45145 CTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCCAGTTGTTTTCCGGCGAA 45204 ||||||||||||||||||||| || ||| | || || || || || ||||| || Sbjct 1 CTCCTTCTGAATGTTGTAGTCACCGAGGGTACGACCATCCTCGAGCTGCTTGCCGGCAAA 60 Query 45205 TATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCAATTTTTTGCTTAACCGC 45264 || | ||||| || ||||| || | |||||||| || || || ||| || Sbjct 61 GATGAGACGCTGCTGATCGGGTGGGATTCCCTCCTTATCTTGGATCTTGGCCTTGACGTT 120 Query 45265 CGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTGCCCGTCAGAGTCTTCAC 45324 | | | |||| ||||| ||||| | ||| || |||||||| || ||||||||||| Sbjct 121 CTCGATAGTGTCAGAGCCCTCAACCTCGAGGGTGATAGTCTTGCCAGTGAGAGTCTTCAC 180 Query 45325 AAAGATTTGCAT 45336 |||||| ||||| Sbjct 181 AAAGATCTGCAT 192 >seq3381 Length=12314 Score = 122 bits (134), Expect = 7e-23 Identities = 163/227 (72%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 45110 CCACCTCTCAATCTTAATACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTC 45169 ||||| | | ||| | |||||||| || ||| ||| ||||| ||||||||||| Sbjct 1185 CCACCACGGAGTCTAAGGACCAAGTGAAGGGTGGACTCTTTCTGGATGTTGTAGTCACCG 1126 Query 45170 AGTTGGCGATCGTCGTCCAGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGC 45229 || ||| | || |||| ||| ||||| || || || | ||||| |||||||| || Sbjct 1125 AGGGTACGACCATCTTCCAATTGCTTTCCAGCAAAAATGAGACGCTGCTGGTCGGGTGGA 1066 Query 45230 ACACCCTCCTTGTCCGCAATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACC 45289 | ||| |||||||| ||| || ||| || | | | | ||||| ||||| ||| Sbjct 1065 ATACCTTCCTTGTCTTGAATCTTAGCCTTGACATTCTCAATGGTGTCCGAGCCCTCAACC 1006 Query 45290 TCCACGGTAATCGTCTTGCCCGTCAGAGTCTTCACAAAGATTTGCAT 45336 || | || ||||||||||| || |||||||| |||||||| ||||| Sbjct 1005 TCAAGAGTGATCGTCTTGCCAGTGAGAGTCTTGACAAAGATCTGCAT 959 Score = 107 bits (118), Expect = 2e-18 Identities = 149/209 (71%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 45128 ACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCC 45187 |||||||| || || ||||| ||||||||||||||| || ||| | || || Sbjct 1395 ACCAAGTGGAGAGTAGATTCCTTTTGAATGTTGTAGTCGCCAAGAGTACGACCATCCTCG 1336 Query 45188 AGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCA 45247 ||||| || ||||| || || | || || || ||||| || | ||||||||| || Sbjct 1335 AGTTGCTTGCCGGCAAAGATGAGACGTTGCTGATCGGGTGGGATACCCTCCTTATCTTGG 1276 Query 45248 ATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTG 45307 || || ||| || | | | | ||| |||||| ||||| | ||| || ||||| Sbjct 1275 ATCTTGGCCTTGACGTTCTCGATAGTATCCGAACCCTCAACCTCGAGGGTGATAGTCTTT 1216 Query 45308 CCCGTCAGAGTCTTCACAAAGATTTGCAT 45336 || |||| ||||||||||||||||||||| Sbjct 1215 CCGGTCAAAGTCTTCACAAAGATTTGCAT 1187 Score = 100 bits (110), Expect = 2e-16 Identities = 160/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 45110 CCACCTCTCAATCTTAATACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTC 45169 || |||| || ||| | || | || || ||| ||| ||||| ||||||||||| Sbjct 957 CCTCCTCGCAGTCTGAGGACGAGATGAAGAGTGGACTCTTTCTGGATGTTGTAGTCACCG 898 Query 45170 AGTTGGCGATCGTCGTCCAGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGC 45229 || |||| | || || || || || || || || || | ||||| || ||||| || Sbjct 897 AGGGTGCGACCATCCTCGAGCTGCTTGCCAGCAAAGATGAGACGCTGCTGATCGGGTGGG 838 Query 45230 ACACCCTCCTTGTCCGCAATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACC 45289 | ||||||||| || || || |||||| | | |||| ||||| ||| Sbjct 837 ATACCCTCCTTATCTTGGATCTTAGCCTTAACATTTTCAATAGTGTCGGAGCCCTCAACC 778 Query 45290 TCCACGGTAATCGTCTTGCCCGTCAGAGTCTTCACAAAGATTTGCATGTT 45339 |||| || || |||||||| |||| |||||| ||||||||||||||||| Sbjct 777 TCCAGTGTGATGGTCTTGCCAGTCAAAGTCTTAACAAAGATTTGCATGTT 728 Score = 89.7 bits (98), Expect = 4e-13 Identities = 145/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 45128 ACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCC 45187 |||||||| || || ||||| || |||||||||||| || ||| | || || Sbjct 1623 ACCAAGTGGAGAGTAGATTCCTTTTGGATGTTGTAGTCGCCAAGAGTGCGGCCATCCTCG 1564 Query 45188 AGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCA 45247 || || || || || || ||||| ||||| |||||||| || | ||||||||| || Sbjct 1563 AGCTGCTTGCCAGCAAAGATCAAACGCTGCTGGTCGGGTGGGATACCCTCCTTATCTTGG 1504 Query 45248 ATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTG 45307 || ||| ||| || | | | | | || || || ||||| | || || ||||| Sbjct 1503 ATCTTTGCCTTTACGTTCTCAATGGTATCAGAGCCTTCAACCTCGAGAGTGATAGTCTTA 1444 Query 45308 CCCGTCAGAGTCTTCACAAAGATTTGCAT 45336 || || |||||||| || ||||| ||||| Sbjct 1443 CCAGTAAGAGTCTTGACGAAGATCTGCAT 1415 >seq1351 Length=12664 Score = 122 bits (134), Expect = 7e-23 Identities = 152/209 (73%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 45128 ACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCC 45187 |||||||| || ||| |||||| |||||||||||||| || ||| | || || Sbjct 4684 ACCAAGTGAAGGGTGGACTCCTTTTGAATGTTGTAGTCACCGAGGGTGCGTCCATCCTCA 4625 Query 45188 AGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCA 45247 ||||| || ||||| || ||||| || || |||||||| || | ||||||||||||| Sbjct 4624 AGTTGCTTGCCGGCAAAGATCAAACGTTGCTGGTCGGGTGGGATACCCTCCTTGTCCTGG 4565 Query 45248 ATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTG 45307 || || ||| || | | | | |||| ||||| ||||| | ||| || |||||| Sbjct 4564 ATCTTGNNCTTGACGTTCTCGATGGTGTCGGATCCCTCGACCTCGAGGGTGATGGTCTTG 4505 Query 45308 CCCGTCAGAGTCTTCACAAAGATTTGCAT 45336 || || || ||||| || ||||| ||||| Sbjct 4504 CCAGTGAGGGTCTTGACGAAGATCTGCAT 4476 Score = 120 bits (132), Expect = 2e-22 Identities = 152/209 (73%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 45128 ACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCC 45187 |||||||| || ||| |||||| |||||||||||||| || ||| | || || Sbjct 4912 ACCAAGTGAAGGGTGGACTCCTTTTGAATGTTGTAGTCACCGAGGGTGCGTCCATCCTCA 4853 Query 45188 AGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCA 45247 || || || ||||| || || | ||||| |||||||| || | |||||||||||| Sbjct 4852 AGCTGCTTGCCGGCAAAGATGAGACGCTGCTGGTCGGGTGGAATACCCTCCTTGTCTTGG 4793 Query 45248 ATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTG 45307 || || ||| || | | | | |||| ||||| ||||||| || || ||||| Sbjct 4792 ATCTTGGCCTTGACGTTCTCGATGGTGTCGGATCCCTCGACCTCCAGAGTGATGGTCTTT 4733 Query 45308 CCCGTCAGAGTCTTCACAAAGATTTGCAT 45336 || || ||||||||||||||||||||||| Sbjct 4732 CCAGTTAGAGTCTTCACAAAGATTTGCAT 4704 Score = 114 bits (126), Expect = 1e-20 Identities = 155/216 (72%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 45121 TCTTAATACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATC 45180 ||| ||||||||||| || ||| |||||| |||||||| |||||| || |||| | Sbjct 5147 TCTCAATACCAAGTGAAGGGTGGACTCCTTTTGAATGTTATAGTCGCCAAGAGTGCGACC 5088 Query 45181 GTCGTCCAGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTT 45240 || || || || || ||||| || || | ||||| |||||||| || | |||||||| Sbjct 5087 ATCCTCAAGCTGCTTGCCGGCAAAGATGAGACGCTGCTGGTCGGGTGGGATTCCCTCCTT 5028 Query 45241 GTCCGCAATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAAT 45300 ||| ||| || ||| || | | | | |||| ||||| ||||| | || || Sbjct 5027 GTCTTGAATCTTGGCCTTGACGTTCTCGATGGTGTCAGAGCCCTCAACCTCAAGTGTGAT 4968 Query 45301 CGTCTTGCCCGTCAGAGTCTTCACAAAGATTTGCAT 45336 |||||||| || || ||||| || ||||| ||||| Sbjct 4967 GGTCTTGCCAGTGAGGGTCTTGACGAAGATCTGCAT 4932 >seq4240 Length=2116 Score = 116 bits (128), Expect = 3e-21 Identities = 151/209 (72%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 45128 ACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCC 45187 |||||||| || ||| |||||||||||| |||||||| || |||| |||| || Sbjct 1651 ACCAAGTGAAGGGTGGACTCCTTCTGAATATTGTAGTCAGAGAGAGTGCGACCGTCCTCG 1592 Query 45188 AGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCA 45247 || || |||||||| || || | ||||| |||||||| || | |||||||||||| Sbjct 1591 AGCTGCTTTCCGGCAAAGATGAGACGCTGCTGGTCGGGTGGGATTCCCTCCTTGTCCTGG 1532 Query 45248 ATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTG 45307 || || ||| || | | | | |||| || || ||||| | ||| || ||||| Sbjct 1531 ATCTTGGCCTTGACGTTCTCGATGGTGTCAGAGCCTTCGACCTCAAGGGTGATGGTCTTT 1472 Query 45308 CCCGTCAGAGTCTTCACAAAGATTTGCAT 45336 || |||| |||||| || ||||| ||||| Sbjct 1471 CCAGTCAAAGTCTTGACGAAGATCTGCAT 1443 Score = 89.7 bits (98), Expect = 4e-13 Identities = 145/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 45128 ACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCC 45187 ||||| || || || ||||||||| || |||||||| || ||| | || ||| Sbjct 1423 ACCAAATGGAGAGTTGACTCCTTCTGGATATTGTAGTCAGAGAGGGTACGACCATCCTCC 1364 Query 45188 AGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCA 45247 | || |||||||| || || | || || |||||||| || | |||||||||||| Sbjct 1363 AACTGCTTTCCGGCAAAGATGAGACGTTGCTGGTCGGGTGGAATTCCCTCCTTGTCCTGG 1304 Query 45248 ATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTG 45307 || || ||| || | | | | ||||| ||||| ||||| | |||||| ||||| Sbjct 1303 ATCTTGGCCTTGACGTTCTCGATGGTGTCCGAGCCCTCGACCTCAAGGGTAATAGTCTTA 1244 Query 45308 CCCGTCAGAGTCTTCACAAAGATTTGCAT 45336 || || || || || || || || ||||| Sbjct 1243 CCAGTGAGTGTTTTTACGAAAATCTGCAT 1215 >seq3382 Length=4522 Score = 113 bits (124), Expect = 4e-20 Identities = 151/210 (72%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 45128 ACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCC 45187 |||||||| || ||| |||||| || ||||||||||| || ||| |||| ||| Sbjct 4161 ACCAAGTGAAGGGTGGACTCCTTTTGGATGTTGTAGTCAGAGAGGGTACGACCGTCCTCC 4102 Query 45188 AGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCA 45247 | || |||||||| || || | ||||| |||||||| || | ||||||||||| Sbjct 4101 AACTGCTTTCCGGCAAAGATGAGACGCTGCTGGTCGGGTGGGATTCCCTCCTTGTCTTGG 4042 Query 45248 ATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTG 45307 || || ||| || | | | | | || |||||| ||||| | ||| || ||||| Sbjct 4041 ATCTTGGCCTTGACGTTCTCGATGGTATCGGAACCCTCAACCTCAAGGGTGATGGTCTTT 3982 Query 45308 CCCGTCAGAGTCTTCACAAAGATTTGCATG 45337 || ||||||||||| || || ||||||||| Sbjct 3981 CCGGTCAGAGTCTTGACGAAAATTTGCATG 3952 Score = 89.7 bits (98), Expect = 4e-13 Identities = 145/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 45128 ACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCC 45187 ||||| || || || ||||||||| || |||||||| || ||| | || ||| Sbjct 4389 ACCAAATGGAGAGTTGACTCCTTCTGGATATTGTAGTCAGAGAGGGTACGACCATCCTCC 4330 Query 45188 AGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCA 45247 | || |||||||| || || | || || |||||||| || | |||||||||||| Sbjct 4329 AACTGCTTTCCGGCAAAGATGAGACGTTGCTGGTCGGGTGGAATTCCCTCCTTGTCCTGG 4270 Query 45248 ATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTG 45307 || || ||| || | | | |||| ||||| ||||| | ||| || |||||| Sbjct 4269 ATCTTGGCCTTGACGTTTTCAATGGTGTCGGATCCCTCGACCTCGAGGGTGATGGTCTTG 4210 Query 45308 CCCGTCAGAGTCTTCACAAAGATTTGCAT 45336 || || || ||||| || ||||| ||||| Sbjct 4209 CCAGTGAGGGTCTTGACGAAGATCTGCAT 4181 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 394939287587767