Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acytostelium_20leptosomum_20[genbank_20GCA_5F900092245.1_202017-01- 02] 28,227 sequences; 57,256,845 total letters Query= NC_003083.1 Length=118584 Score E Sequences producing significant alignments: (Bits) Value seq8653 105 5e-18 seq3381 91.5 1e-13 >seq8653 Length=1535 Score = 105 bits (116), Expect = 5e-18 Identities = 163/233 (70%), Gaps = 0/233 (0%) Strand=Plus/Plus Query 18098 TCCTCCCCGTAGTCTAAGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGC 18157 |||||| || || | || |||| ||| || || || || || ||||||||||||||| | Sbjct 193 TCCTCCACGGAGACGCAGCACCAAGTGGAGGGTAGACTCCTTCTGAATGTTGTAGTCGCC 252 Query 18158 CATTGTTTTACAATCTTCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGG 18217 | || || ||||| | ||| ||||| ||| |||| | | ||||||||| || Sbjct 253 GAGAGTGCGACCGTCTTCAAGTTGCTTGCCGGCAAAGATCAAACGTTGTTGATCGGGTGG 312 Query 18218 CACGCCTTCCTTATCGGCAATTTGTTGCTTGACCTGTGCAACAGTGTCACCGGGCTCGGT 18277 | ||||| || || ||| | | |||||| | | | ||||||| | |||| Sbjct 313 GATACCTTCTTTGTCTTGAATCTTTGCCTTGACGTTCTCGATAGTGTCAGAGCCCTCGAC 372 Query 18278 TTCAATGGTGATGCTTTTGCCGGTCAATGTTTTTACAAAAATTTGCATTTTTA 18330 || | |||||| | || || |||||||| |||||||| ||||||||| ||| Sbjct 373 CTCTAGTGTGATGGTCTTTCCAGTCAATGTCTTTACAAAGATTTGCATTATTA 425 >seq3381 Length=12314 Score = 91.5 bits (100), Expect = 1e-13 Identities = 159/230 (69%), Gaps = 6/230 (3%) Strand=Plus/Minus Query 18099 CCTCCCCGTAGTCTAAGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCC 18158 ||||| || ||||| || |||| ||| || || ||||| |||||||||||||||||| | Sbjct 1413 CCTCCACGGAGTCTGAGAACCAAGTGGAGAGTAGATTCCTTTTGAATGTTGTAGTCGCCA 1354 Query 18159 ATTGTTTTACAATCTTCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGC 18218 | || || ||| || | ||| ||||| ||| |||| || | ||| ||||| || Sbjct 1353 AGAGTACGACCATCCTCGAGTTGCTTGCCGGCAAAGATGAGACGTTGCTGATCGGGTGGG 1294 Query 18219 ACGCCTTCCTTATCGGCAATTTGTTGCTTGACCTGTGCAACAGTGTC---ACCGGGCTCG 18275 | || |||||||| || | |||||| | | | ||| || ||| ||| Sbjct 1293 ATACCCTCCTTATCTTGGATCTTGGCCTTGACGTTCTCGATAGTATCCGAACC---CTCA 1237 Query 18276 GTTTCAATGGTGATGCTTTTGCCGGTCAATGTTTTTACAAAAATTTGCAT 18325 || | |||||| | || |||||||| || || ||||| |||||||| Sbjct 1236 ACCTCGAGGGTGATAGTCTTTCCGGTCAAAGTCTTCACAAAGATTTGCAT 1187 Score = 82.4 bits (90), Expect = 6e-11 Identities = 158/233 (68%), Gaps = 0/233 (0%) Strand=Plus/Minus Query 18099 CCTCCCCGTAGTCTAAGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCC 18158 ||||| || ||||| || || | ||||| || || ||||| || ||||||||||| | Sbjct 957 CCTCCTCGCAGTCTGAGGACGAGATGAAGAGTGGACTCTTTCTGGATGTTGTAGTCACCG 898 Query 18159 ATTGTTTTACAATCTTCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGC 18218 | || || ||| || | || ||||| ||| |||| || | || ||||| || Sbjct 897 AGGGTGCGACCATCCTCGAGCTGCTTGCCAGCAAAGATGAGACGCTGCTGATCGGGTGGG 838 Query 18219 ACGCCTTCCTTATCGGCAATTTGTTGCTTGACCTGTGCAACAGTGTCACCGGGCTCGGTT 18278 | || |||||||| || | ||| || | | ||| |||||| | ||| Sbjct 837 ATACCCTCCTTATCTTGGATCTTAGCCTTAACATTTTCAATAGTGTCGGAGCCCTCAACC 778 Query 18279 TCAATGGTGATGCTTTTGCCGGTCAATGTTTTTACAAAAATTTGCATTTTTAA 18331 || | |||||| | ||||| ||||| || || ||||| |||||||| ||||| Sbjct 777 TCCAGTGTGATGGTCTTGCCAGTCAAAGTCTTAACAAAGATTTGCATGTTTAA 725 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 379213499381115