Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acytostelium_20leptosomum_20[genbank_20GCA_5F900092245.1_202017-01- 02] 28,227 sequences; 57,256,845 total letters Query= NC_003278.1 Length=35580 Score E Sequences producing significant alignments: (Bits) Value seq19415 464 1e-126 seq7329 282 1e-71 seq2182 224 2e-54 >seq19415 Length=1017 Score = 464 bits (514), Expect = 1e-126 Identities = 710/1007 (71%), Gaps = 27/1007 (3%) Strand=Plus/Plus Query 1852 GTACTTACGCCGGAACAGCGTGGCCGACTCGTTCAGCAGGGCGCTCTGTAGGGCGCAGAA 1911 |||||| ||||||||||||||||| |||||| ||||| ||||| || || || | Sbjct 1 GTACTTGCGCCGGAACAGCGTGGCGCTCTCGTTGAGCAGTGCGCTTTGCAGCGCTGCCAG 60 Query 1912 CCACTCCGGCACTCCGTAGATTTCCTGATTGATGTCGGCCTCGCGCAGTTGGATCACGCT 1971 ||||||||||| |||||||||||||| ||||| ||||||||||||| ||| | Sbjct 61 CCACTCCGGCAGGCCGTAGATTTCCTGGTTGATATCGGCCTCGCGCAAGTGGCAGATCGA 120 Query 1972 GCCCTTCTCGAATTCGTGCTCATCCTTCCAGCTGCGCACCTGGTAGAACGTCTCCAGATC 2031 || | ||||| || || |||||||||| ||||||||||| | ||||||| || Sbjct 121 ACCGGGGGCAAATTCATGTTCGTCCTTCCAGCCACGCACCTGGTAATAGGTCTCCATGTC 180 Query 2032 GGTGCCGCGGCGCATGTACTTGGCCAGCGGCGCCTGCAGCGGCATCCGCGTACCCAGGCG 2091 || |||||||||||||| ||||| || | | |||| ||| | || | | Sbjct 181 CACACCCCGGCGCATGTACTTCGCCAGTGGAGGCAGCAGGCCCATG-GTGTTGCG----G 235 Query 2092 AGAACGAGGCTGC-----TCGAGGTATGCCGA-GCCAAATGTCAGCCAGTCCAGGGAGAA 2145 || | | | ||| || ||||| || | |||| | ||||||||||||| ||| Sbjct 236 AGCATGTTGTTGCGCTTTTCCAGGTA-GCAGTTGCCACACCAGAGCCAGTCCAGGGCGAA 294 Query 2146 CTGCTCGAACGTCGCCCGGCTGAG-CAGGCGGTGCGGGATGAAGGTCTTGGCCAGCATGT 2204 |||| ||| ||||| || | ||| || ||| ||||||| Sbjct 295 CTGCNNNNNNNNNNNNNNNNNNNTACAGCCGGTGGGGAACGAACGTGCGGGCAAGCATGT 354 Query 2205 TGCGCTTGAACTTCAGGCCCGACTGCAGATAAACGCTCGACCCCACCGACTTGGCCAGCC 2264 |||||||||| ||||| |||||||| || || ||||| | || || || ||||| | Sbjct 355 TGCGCTTGAAGTTCAG-CCCGACTGGAGGTACACGCTGGCCCGGGTCGTTTTCGCCAGGC 413 Query 2265 CCTCCATAGACAGCGGCGGCTCGTACCACCGCCCGTTCGGCCAGCACTCGAGATAGTCGA 2324 | ||||| |||| ||| | || |||| || || || | ||||||||| || ||||||| Sbjct 414 CGTCCATGGACATCGGTGTTTCAAACCAACGGCCATTGGCCCAGCACTCCAGGTAGTCGA 473 Query 2325 GGATGCCCCGGCCGTCGAGCACCGGCATCGGATCACCGAAGGTGAAGGCCTCGGCACGGC 2384 |||| |||||| || | ||| || ||||||||||| ||||| || || | |||| Sbjct 474 GGATCTCCCGGCTATCCAACACGGGAGCGGGATCACCGAAAGTGAACGCTTCAAC-CGGC 532 Query 2385 C---ACCCTGGCGCGGGATGAACTCGCCTTCCTGGGCGGACTGGACTGTAACTGGCTGCT 2441 | || | |||| | | || || ||||| || | ||| | || | |||| Sbjct 533 CCGGACTCAGGCG--GCAGCAAATCCCCTTCAACGGGTGGCTGAGCGGTGGCCAGCTGGG 590 Query 2442 GGCGGCGGTGGCTGCGACGTTTGCTCATCCGAAAATCTCCATGCGGCCGGTATTCGCGGG 2501 | ||| | |||| |||||||| | | |||||| ||||| ||||| | Sbjct 591 TTCCGCGCTT------ACGTCTGCTCATCAGTAGGACTCCATAAATCCGGTGTTCGCCGT 644 Query 2502 GGTCTGCCCCTCGAGCGGCTCGTTTTGCAATGCGTGGAATAGCGCCCAGGCCAGATCGGC 2561 ||||||||| || || || ||||| |||| |||||||| |||||||| || || ||||| Sbjct 645 GGTCTGCCCTTCAAGGGGTTCGTTGTGCAGCGCGTGGAACAGCGCCCACGCTAGGTCGGC 704 Query 2562 GTGGCCGGTGTTGTCGTTGCGGCCGGCGGTATAGGTGAACTGGCGCCCACCGGCCGTGAT 2621 ||||| || | ||| |||| ||||| || || |||||| |||||| ||| ||||| Sbjct 705 ATGGCCCGTCTCGTCTGTGCGACCGGCCGTGTAAGTGAACATGCGCCCGGAGGCGGTGAT 764 Query 2622 GGTCTTGCGGATAGCCATCAGCGCCTGGGCCAGGTCGGTCCAGCCGGCGTCGAATTCGAG 2681 || |||||||||||||||| | ||| |||| || |||||||| || ||||| || || Sbjct 765 TGTTTTGCGGATAGCCATCAATGACTGCGCCATATCCGTCCAGCCCGCATCGAACTCCAG 824 Query 2682 GCGGCCGTTCTTGATCACTGACCAGGCCTTCATGACCAACTGCGTCTTCACCTCGGGCGA 2741 | |||||| ||||| || | ||||||| |||| | || || || ||||| || Sbjct 825 CCTGCCGTTTTTGATGACGTCGTAAGCCTTCAGCACCAGGCGGGTTTTGACTTCGGGTGA 884 Query 2742 GTAGCTGAAGGTGCGCACCCCCGGGAAGAACTGGCGCACCAGCTGCGCGACGCCAGAGCC 2801 ||||||||| ||| | |||||||||||| |||||||||||| ||||| || || Sbjct 885 GTAGCTGAACGTGGTGATGTTCGGGAAGAACTGCTTCACCAGCTGCGCCACGCCGGAACC 944 Query 2802 CATGCCGGTGGTGTCGACGCCGATGTAGGTGACCCAGTAGCG-CTGG 2847 | |||||||| | |||| ||||||||||| ||||||||||| |||| Sbjct 945 CGTGCCGGTGATATCGATCCCGATGTAGGTCACCCAGTAGCGTCTGG 991 >seq7329 Length=1002 Score = 282 bits (312), Expect = 1e-71 Identities = 308/409 (75%), Gaps = 0/409 (0%) Strand=Plus/Minus Query 1433 TCGAACTGCGCGAACCTCACGACCTCCTCCCCGATCATCTCATTAACCTGCTGCAGGCGC 1492 || |||| | |||||| || ||||| || || | | ||| || ||||| ||| | | Sbjct 409 TCAAACTCCTTGAACCTGACAACCTCTTCACCCAGCCACTCGTTGACCTGGGCCAGCCTC 350 Query 1493 GTCTGCATTGGCGCGAGTTCCAAGCTTGCCCAGACCGCTGCTGCGTCGCTAATGGATCCG 1552 | ||||| ||| | || || | ||||| ||| | || || || | | || || Sbjct 349 GCCTGCAACGGCTCCAGCTCGTTGACCGCCCAAACCTCAGCAGCCTCCCGCAACGACCCA 290 Query 1553 AACCCACCAGCGTTCTGCGGCACCACCCCCATCAGCTGCGGATAGACCCGCAGGCCGGCG 1612 || || || |||||||||||||| | ||||||| |||||| | |||| | ||| Sbjct 289 AAACCGCCCGCGTTCTGCGGCACGATGCCCATCAACTGCGGTGGAATGCGCAACGCCGCG 230 Query 1613 AGCTGGTCGTCGCGGCTGATGTTCTTGATTGAGCCGAACTCGTCCTTGGCCGCCACCTCG 1672 ||| | ||||| ||||||||||| ||||| |||| ||| |||||||||||||| |||||| Sbjct 229 AGCAGATCGTCACGGCTGATGTTTTTGATCGAGCTGAATTCGTCCTTGGCCGCAACCTCG 170 Query 1673 CTGACCGGAATCAGTTGGATCCCCTCCTTCTTCCCGTTCGGCGCGTAGACGAACAGGTTG 1732 || ||||| || || || || || || ||||| || ||||||||| || ||||||||| Sbjct 169 CTCACCGGGATGAGCTGAATGCCGTCTTTCTTGCCTGCCGGCGCGTACACAAACAGGTTG 110 Query 1733 CGGAAATTGCCAGGCCCCTTCGCGGTCTTCAGCGCCGTGCGCAGCGCGTCGATGTCTTCC 1792 || || ||||| ||||| |||| | ||||||| || |||||||| | ||||||||| || Sbjct 109 CGAAAGTTGCCTGGCCCTTTCGAGTTCTTCAGTGCGGTGCGCAGTGAGTCGATGTCCTCT 50 Query 1793 TCATTCTGTGCGGCGTCGGTCATGTAGAGGATGAAGCCGGCGTGGCTGC 1841 || ||||| || |||||||||||||| || ||||| ||||| ||||||| Sbjct 49 TCCTTCTGCGCCGCGTCGGTCATGTACAGAATGAAACCGGCATGGCTGC 1 >seq2182 Length=6766 Score = 224 bits (248), Expect = 2e-54 Identities = 494/732 (67%), Gaps = 9/732 (1%) Strand=Plus/Minus Query 31728 TGCCTTGGTGGCATCGACGTGGACCCGGCCGGCCTCCGCGACTTCGAGCGCCTGGCCGGT 31787 ||| | |||||||||||||| || |||| | |||| || || || ||||| ||| Sbjct 3211 TGCATCGGTGGCATCGACGTCAACGCGGCAGCAATCCGGGATTTTGAACGCCTCAGCGGA 3152 Query 31788 GTCCCG-GGCACCCTGCTGGACCTGTTCACCCGCGACCAATACATCCGCTTCCATGGAAC 31846 || || || ||| | || || || ||| || || || | || |||||| || | Sbjct 3151 -TCTCGCGGAACCGTCCTCGATCTCTTCGATCGTGATCAGTTCAAGGACTTCCACGGCAA 3093 Query 31847 GGAGCCTCCCGCCGGT-TGGCGGGAGGCAACCCCGGAGGAAATCCGCCGCGCCGCCGGCG 31905 ||||| || || || ||||| || || || ||| || ||||| | || ||||||| Sbjct 3092 AGAGCCGCC-GCGGGAGTGGCGCGAAGCCACTGCGGCAGATATCCGTCATGCGGCCGGCG 3034 Query 31906 GGCGCCGACCGG-ATGCCGTGTTCATCAGCTCGCCCTGCAAAGGCGCCAGCGGCCTGCTG 31964 | || ||| || ||| ||| || | ||||||||||| |||||| |||||| Sbjct 3033 G-CGAATACCCCCATATCGTCTTCCTCTCGGCCCCCTGCAAAGGGTTCAGCGGACTGCTG 2975 Query 31965 TCGGAGAAGATGAGCCTGACTCCGAAGTACCAGGCGCTGAACGAGTTGACGCTGCGCTGC 32024 ||||| || ||| ||| | ||||||||||| ||||| | || || || || Sbjct 2974 TCGGAAAACCGCAGCAAGACCGCCAAGTACCAGGCATTGAACCGTCTAACCCTACGTGGC 2915 Query 32025 ATCTGGCTGATGGGCGAGGCATGGGCTGATGACCCGGTGCCGCTGATCGTCTTCGAGAAC 32084 | ||||||||| ||||| | ||||||| | ||||||||| ||||||||| Sbjct 2914 GTATGGCTGATGCTGGAGGCCTTCCAGGATGACCTCCCGGAGCTGATCGTTTTCGAGAAC 2855 Query 32085 GTCCCGCGTCTGGCGAGCCGCGGCCGGCACCTGCTGGACCAGATCAACAGCCTGCTCGGT 32144 || || || | || || ||||| | ||| || || |||||| ||||| | Sbjct 2854 GTGCCTCGCATCCAGAATCGTGGCCGCCGCCTCCTCGATCAGATCGTTCAACTGCTGCGC 2795 Query 32145 GGCTTCGGCTACGCCGTGGCGGAAACCACTCACGACTGCGGCGAGCTGGGCGGTCTGGCC 32204 ||| ||| |||||| || || || || ||||| ||||||||||| || || || || Sbjct 2794 CGCTACGGGTACGCCACTGCCGAGACGACGCACGATTGCGGCGAGCTCGGTGGCCTCGCT 2735 Query 32205 CAGTCGCGGAAGCGCTTCCTGCTGGTGGCGCGGCACGTCGAGAAAGTGCCGCCCTTCCTG 32264 || || || || || |||||||| || | || || || | || |||||| |||| | Sbjct 2734 CAATCCCGTAAACGATTCCTGCTCGTCGGCCGCAACATCAACAAGGTGCCGGACTTCATC 2675 Query 32265 TACGAGCCGGAGAAGAAGAGCCTGCGCGCCGTCGGCGACATCCTCGGCCGCATGCCGCTG 32324 || || || | ||| ||| || || | || ||||| ||||| ||||| ||||| || Sbjct 2674 TATGAACCTGTGAAAAAGTCGCTTCGTTCGGTAGGCGATATCCTGGGCCGTATGCCTCTC 2615 Query 32325 CCCGGCGATATCGACGCCGCCGGCCCGATGCACCGTGTGCCATCCCTGCAGTGGAAGACC 32384 |||||| || |||| || ||| || |||||||| || || |||| | ||||| Sbjct 2614 CCCGGCCATTTCGA---CGGCGGTCCAATGCACCGCGTACCGAACCTGTTTTTCAAGACT 2558 Query 32385 TGGGTTCGCCTGGCACTGGTGCGAGCCGGCAGCGACTGGCGCAGCCTGAACGACCTCGCC 32444 ||| | | ||||| | || ||| |||| |||||||| |||||| || Sbjct 2557 TGGTTGAGGCTGGCCTTCGTTGAAGCGGGCAAGGACTGGCGATCGCTGAACAGGCTGAAT 2498 Query 32445 GTCGAGGACGGC 32456 ||||| |||||| Sbjct 2497 GTCGAAGACGGC 2486 Score = 118 bits (130), Expect = 2e-22 Identities = 167/232 (72%), Gaps = 2/232 (1%) Strand=Plus/Minus Query 33116 CACCTGGCACAGGCCGTTTACCACCCTGGAACTCGCCGCGCTGCAGAGCTTGGTCGACCC 33175 ||||||||| | || || ||||| || |||||| ||||| || ||| || |||| || Sbjct 1553 CACCTGGCATCGTCCCTTCACCACGCTCGAACTCTGTGCGCTCCAAAGCCTGATCGAGCC 1494 Query 33176 CGAAGAGCAGTTGGTCCTCGACGGCCTGAGCGACAGCGACTGGCGCGAGCGGATCGGCAA 33235 |||||| | ||| |||||||| || ||| | |||||| | |||||||||||||| Sbjct 1493 GGAAGAGTATCTGGAACTCGACGGGCTCTCCGATGGTGACTGGAGGGAGCGGATCGGCAA 1434 Query 33236 TGCGGTTCCGCCGGCTGCGGCCGAGGCCATCGCCGGCGTGATGGGCACCACCCTGTTGTT 33295 ||||| || |||| ||| ||||| || |||| || | | | || |||||||| | | Sbjct 1433 CGCGGTGCCCCCGGATGCAGCCGAAGCGATCGGCGAGGCGTTCGGTACCACCCTACTCCT 1374 Query 33296 GG-CTGAGGCTGGCGAGACCTTCCTGCTCAGTAGCACGCCGATCTGGGTGCG 33346 || ||| || ||| |||||| | || | | || || |||||||| || Sbjct 1373 GGTCTGGAGCGGGC-AGACCTACTCAATCGGCAAAACCCCAATCTGGGTACG 1323 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 113696276726708