Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acytostelium_20leptosomum_20[genbank_20GCA_5F900092245.1_202017-01- 02] 28,227 sequences; 57,256,845 total letters Query= NC_003309.1 Length=53373 Score E Sequences producing significant alignments: (Bits) Value seq373 147 7e-31 seq124 122 3e-23 seq6137 84.2 7e-12 >seq373 Length=63667 Score = 147 bits (162), Expect = 7e-31 Identities = 239/344 (69%), Gaps = 0/344 (0%) Strand=Plus/Plus Query 3271 CGGATCTACAAGATCCCGGCTCACATGGTGAACGAGTTGGAGCGAGCCACGTTCAGCAAC 3330 ||| |||| || |||||| | || |||||| | | ||| | ||| || || |||| Sbjct 16539 CGGCTCTATAAAATCCCGCCACATATGGTGCAGATGCTGGCGAAAGCGACCAACAACAAC 16598 Query 3331 ATCGAGCACCAGTCGCTCCAGTTCGTCATCTACACGCTGTTGCCGTGGGTCAAGCGGCAT 3390 |||||||||||| || |||||||| || || |||||| || | ||| | || || ||| Sbjct 16599 ATCGAGCACCAGGGCCTGCAGTTCGTGATGTATACGCTGCTGGCCTGGCTGAAACGCCAT 16658 Query 3391 GAGCAGGCGAAGACGCGCGACCTTTTGCTGCCGTCGGAGCGCAAGCAGTACTTCATCGAA 3450 ||| || | |||||| || | ||||| || ||| | | | |||||| Sbjct 16659 GAGGGTGCACTGCAGCGCGATCTGCTTCTGCCCAGCGAACGCCGCGATTTGTACATCGAG 16718 Query 3451 TACAACCTCGCCGGGCTGCTGCGCGGCGATCAGTCGTCGCGATACGCCGCCTACGCGGTC 3510 | |||| | |||||||| |||| ||||| ||| ||| || || | | || ||| | Sbjct 16719 TTCAACGTTTCCGGGCTGTTGCGAGGCGACCAGAAGTCACGCTATGAATCGTATGCGCTG 16778 Query 3511 GGGCGCCAGTGGGGCTGGCTGTCGATCAACGACATCCGGCGGCTTGAGAACATGCCGCCG 3570 || ||||||||||| ||||| || | ||||| |||||||| | ||||| ||||||| Sbjct 16779 GGCCGCCAGTGGGGATGGCTATCCACTAACGATATCCGGCGTATGGAGAATTTGCCGCCA 16838 Query 3571 GTCAAGGGCGGCGACATCTACCTGAGCCCGATGAACATGGTTGA 3614 | ||||| |||| ||||||| ||| | || ||||| || Sbjct 16839 ATTGCTGGCGGGGACAAATACCTGACGCCGCTCAATATGGTCGA 16882 >seq124 Length=18415 Score = 122 bits (134), Expect = 3e-23 Identities = 610/956 (64%), Gaps = 47/956 (5%) Strand=Plus/Plus Query 33405 TCAGCTTCAGCGGGCGGGATATAGCCGAGCGGTTCCATCAGCCGATGATGGTTGTACCAG 33464 || ||||| || || | ||| ||| ||| ||||| || || ||| ||| |||||| Sbjct 13927 TCTGCTTCTGCCGGAAGAGTATGGCCCAGCCTTTCCAGCAATCGTCGATTGTTATACCAG 13986 Query 33465 GCGACCCATTCCAGCGTTGCCAGTTCGACGGATTCCCTCGTTTTCCAAGGGGCGCGC-CG 33523 | ||||| || || |||||||| || | | | ||||||| || | || Sbjct 13987 TCCACCCACGTGAGTGTGGCCAGTTCTACTTCTGCACGGTTTTTCCA----GCTCTTACG 14042 Query 33524 ATGAATCAGTTCCGTCTTGTACAGGCCGTTGATCGTTTCGGCCAGCGCATTGTCGTAGCT 33583 || || | |||| ||||| || || ||||| | || |||| ||| ||||| || Sbjct 14043 GTGTATTACCTCCGCTTTGTAAAGACCATTGATGCTCTCCGCCATCGCGTTGTCATACGA 14102 Query 33584 GTCGCCCCGGCTGCCGACTGAGGGCTCGATGCCGGCCTCAGCCAGCCGTTCGCTGTAG-C 33642 |||||| || || ||| | | | ||||| || ||||| | ||||| | Sbjct 14103 GTCGCCTGTACTTCCTGTTGATGCCAGTAATCCGGCTTCCTTAAGCCGCTGTGTGTAGGC 14162 Query 33643 GAATGCTGACGTATTGAGACCCCCTGTCGGAATGATGAATCAAAGTCCCGTCCTCGCCCG 33702 | | | || || ||||| || | || ||||| | |||| | || || Sbjct 14163 CAGCGAT-ACATACTGAGAACCTTTATCACTGTGATGGA--------CCGTGC-CGGACG 14212 Query 33703 GTTGGCGGGCGTACAGCGCTTGTTCAAGTGCATCCAGAACAAAGTCCGTGGTCATCGACG 33762 || | ||||| | | ||| || || ||||||||||| || || ||| ||| |||| Sbjct 14213 GTCGACGGGCCCATAACGCCTGCTCCAGTGCATCCAGCACGAATGTCGTTTCCATGGACG 14272 Query 33763 AGCTGACCCGCCAGCCAACAATACGGCGGGCGAACACGTCGATCACGAATGCCACGTACA 33822 | ||||||||| || || || | ||| ||||| || || | ||| ||||| || | Sbjct 14273 ATGAGACCCGCCACCCCACGATGTATCCGGCAAACACATCAATGATGAACGCCACATAGA 14332 Query 33823 GCCAGCCTTGCCATGTCGAGACATACGTAAAATCCGACACCCAGAGCTGATTCGGTCGGT 33882 |||| |||||||| ||| || |||||||| | |||||| ||||| | ||||| | Sbjct 14333 CGAAGCCCTGCCATGTGCTGACGTAAGTAAAATCAGCCACCCACAGCTGGTCAGGTCGTT 14392 Query 33883 CAGCCTTGAACTGCCGGTTGACTCGGT--CCAGCGGGCGCGGCGCGGTCACATCGG-TAA 33939 | ||| |||||| ||||| || |||| || |||| || || || ||| | | Sbjct 14393 CTGCCACGAACTGACGGTTTACGCGGTCGCCTGCGGCAACG--GCTTTC----CGGCTGA 14446 Query 33940 TCGTCGTGCGAACACGCTTACC---GCGAACTGCGCCACGCAAG-CCCTGCAGCTTCATC 33995 | ||||| || || ||||| | |||| || ||||| ||| | | ||| Sbjct 14447 TGGTCGTACGGACCTTTTTACCCCAGAGAACACCG----GCAAGTCCCATAACCGCCATG 14502 Query 33996 AACCGTCCGACCGTGCAGCGTGCCACCGTAATGCCTTCCCGGTTCATCTGCTTCCAGACC 34055 | ||| | || ||||| | ||||| | || |||||||| || ||| |||||| Sbjct 14503 AGACGTGCCACAGTGCATCTGGCCACTCTGATACCTTCCCGTAACAACTGACGCCAGACT 14562 Query 34056 TTCGGCACGCCGTAGACCTGCATGTTGGCCTGCCAGACACGCTTGATCTCCGGTTGCAAA 34115 || |||| ||||| |||| || | | | || |||| ||||| || | Sbjct 14563 TTACGCACACCGTATACCTTGTGATTTTCATCGTATACGCGCTGTATCTC---TTTCTTC 14619 Query 34116 AGC---TCATCGCGTTTCGCGCGGGCGCAGCGTTTCGACGGATCGCGAAGTTG-TGCTGC 34171 ||| | |||||| | ||| ||||| | |||||| ||||| || || | || ||| Sbjct 14620 AGCCAGTTATCGCGCTGCGCACGGGCACTGCGTTTATCCGGAT---GATGTCGCTGTTGC 14676 Query 34172 ATGGCGTCGGTAGCCC---GACGGGGCAATCCGCAAGACCTTGCAGATCGGCTCGACCCC 34228 || | |||| | ||||||||||| ||| | |||| | ||| ||||||| Sbjct 14677 -TGACAGTGGTAATACGTTGACGGGGCAATATGCAGTTCGCTGCATAGCGGTCCGACCCC 14735 Query 34229 GAAGGTGTCGCGATGCTGATCAATGAAGGCCTTCAGGACTTGAAACGGCGGTCGAGCTCC 34288 | | || || ||| ||| | | | | ||| || | ||||||||| |||| Sbjct 14736 GTACTGCTCACGCAGCTTATCCAGCAGTGGCATCATTTTTTCCAGAGGCGGTCGAACTCC 14795 Query 34289 GCCTGAGCGAAAAACGCGCTCGCCAGTTTGAGAATCTCGTTGGTCCGGCGCAGTTC 34344 ||| || ||| | ||| ||| | ||||| ||||| | ||||||||||| Sbjct 14796 ACCTTCGCAAAATAAGCGGAAGCCTGGCGAAGAATATCGTTACTGCGGCGCAGTTC 14851 >seq6137 Length=2664 Score = 84.2 bits (92), Expect = 7e-12 Identities = 157/225 (70%), Gaps = 12/225 (5%) Strand=Plus/Minus Query 19361 TGTACGGGATCGACCTGAAATGGGCGTTCCCGGGTGACGGCTCCGCCGGCGACACGCAGC 19420 ||| ||| |||| |||| |||| ||||| | || || ||| || || |||| Sbjct 708 TGTTCGGCATCGGTTTGAAGTGGGGTTTCCCTGCTGGCG------CCGAAGATACCCAGC 655 Query 19421 GAACGGAGATCTGGTACAGCCGCACGCCGAATCGCGACGACGCGATCAAGTTCTCGGATT 19480 | |||||| ||||||||| || ||| || | || || ||||| ||| | |||||| Sbjct 654 GGACGGAGCTCTGGTACAACCCGACGAACAACCTCGGCGCCGCGACGAAGCTGGCGGATT 595 Query 19481 TCGCGTTCCCGCAGGC-GTCGACGTCGTAT-CAGGGGCTCGCGGTCGGACAGGT-GTTTT 19537 | || | ||||||||| | | || || || ||| ||| || | ||| | | ||| | Sbjct 594 TGGCATACCCGCAGGCTGACTAC--CGCATGCAGTCGCT-GCTGGCGGGCGCGCAGTTCT 538 Query 19538 ATTTCTGGGCGCGCCTGGTCGACACGTCCGGCAACGTCGGGCCGT 19582 ||||||||||||||||| ||| |||||||| |||| |||| Sbjct 537 TCTTCTGGGCGCGCCTGGTGGACCGCACCGGCAACATCGGTCCGT 493 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 170614791492290