Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acytostelium_20leptosomum_20[genbank_20GCA_5F900092245.1_202017-01- 02] 28,227 sequences; 57,256,845 total letters Query= NC_003310.1 Length=196858 Score E Sequences producing significant alignments: (Bits) Value seq19 269 3e-67 seq3533 196 6e-45 seq1043 168 8e-37 >seq19 Length=770976 Score = 269 bits (298), Expect = 3e-67 Identities = 1027/1594 (64%), Gaps = 46/1594 (3%) Strand=Plus/Minus Query 62679 GCACCGTAATAAATGGTTTCAAAGATCTTCTTATTTAGATCTTGTGCTTCCGGGCTATCA 62738 ||| || ||||||| |||||||| || | ||||||| | || ||| | || ||| Sbjct 362637 GCAGCGAAATAAATCGTTTCAAAAATTTCTTTATTTAAAATTTTTGCCCCTTCACTTTCA 362578 Query 62739 AATGGATAATTTAAGAGAATAAACGCGTCCGCTAATCCTTGAACACCAATACCGATAGGT 62798 ||||| || | || ||||| || || || ||||| || ||||| | ||| | ||| Sbjct 362577 AATGGTAAACGCATCAGGATAAAAGCATCTGCCAATCCCTGTACACCTAAACCAACTGGT 362518 Query 62799 CTATGTCTCTTATTAGAGATTTCAGCTTCTGGAATAGGATAATAATTAATATCTATAATT 62858 || || | | | || || ||| |||||| | |||||||||||| ||| |||||| Sbjct 362517 CTGTGGCGCATGTTGGAATTTTTAGCTTCCTCTACCGGATAATAATTATGATCAATAATT 362458 Query 62859 TTATTGAGATTTCTGACAATTACTTTGACCACATCCTTCAGTTTGAGAAAATCAAATCGC 62918 ||||| || || | | | | ||||| | | ||| || |||||| Sbjct 362457 TTATTCAGGTTCAGGGTAGCCTGATAGGTTACATCATATAATTTCTGATGATCAAACTCT 362398 Query 62919 CCATCTATTACAAACATGTTCAATGCAACAGATGCCAGATTACACACGGCTACCTCAT-- 62976 || | || ||||| | ||| || | || ||||| ||||| || || ||||| | Sbjct 362397 CCGTTGATGACAAATCTTGGCAAAGCCAACGAGGCCAGGTTACATACAGCAACCTCGTCT 362338 Query 62977 TAGCATCCGCATATTGTATTATCTCAGTGCAAAGATTACTACACTTGATAGTTCCTAAAT 63036 | | | | ||| | ||| || || || ||||| || || ||||| |||||||||| Sbjct 362337 TTGGAA--GTATACTCTATAATTTCTGTACAAAGGTTGGAACTTTTGATGGTTCCTAAAT 362280 Query 63037 TTTGTTGATTACTCTTTTTGTTACACGCATCCTTATAAAGAATGAATGGAGTACCAGTTT 63096 |||| || || || |||| ||||| ||||| | | | || || || |||| Sbjct 362279 TTTGCTGGTTGGATTTGCTGTTTGCTGCATCTTTATACAACAGATAAGGGGTTCCGGTTT 362220 Query 63097 CAATCTGAGATTCTATAATCGCTTTCCAGACGACTCGAGCCTTTATTATAGATTT----G 63152 ||||||| || || | ||| || ||| | || | || |||| || | ||| | Sbjct 362219 CAATCTGTGAATCCAGAATGGCAAACCAAAGCTCTTGTGC-TTTA--ATGGTTTTACGGG 362163 Query 63153 TATCTCCTTTCTCTTTCGTATAGAGTATACAATCGTTCGAACTCGTCTCCCCAAACATTG 63212 | ||||| || ||||||| | ||| || ||||| || | || || || | Sbjct 362162 CACGTCCTT-CTTTTTCGTAACGCTCATATAAAGCATCGAATTCTGCACCA-AAGCAATC 362105 Query 63213 T-CCAATCTAGGACATTCATCCGGACACATCAACGACCACTCTCCGTCATCCTTCACTCG 63271 | ||| || || ||||| ||||| | || ||| ||||||| || | || | Sbjct 362104 TGCCAGTCCCGGGGCTTCATGAGGACAGAATAAACTCCAGTCTCCGTTTTCTTCTACCCT 362045 Query 63272 TTTCATAAAGAGATCAGGAATCCAAAGAGCTATA-AATAGATCTCTTGTTCTATGTTCCT 63330 | |||| || || ||| | |||||| || ||| |||| |||||| | | | |||| | Sbjct 362044 TCTCATGAACAGGTCACATACCCAAAGGGC-ATAGAATAAATCTCTGGCACGAAGTTCTT 361986 Query 63331 CGTTTCCTGTATTCTTTTTA---AGATCGAGGAACGCCATAATATCAGAATGCCACGGTT 63387 | || || || |||||| || || || || || | ||| | |||||| || | Sbjct 361985 CTTTACC---ATGGTTTTTACGCAGGTCCAGAAAACTCAGCACATCTGCATGCCATGGCT 361929 Query 63388 CCAAGTATATGGCCATAACTCCAGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGG 63447 ||| ||| ||||| | | | || ||||| ||| ||||| || | || | |||| Sbjct 361928 CCAGGTAAATGGCAAAAGCACCTTTACGTTTACCTCCACCCTGGTCCACATAACGGGCGG 361869 Query 63448 TGTTATTATAAACTCTCAACATTGGAATAATACCGTTTGATATACCATTGGTACCGGAGA 63507 | | ||| | ||| ||||||| || | ||| || || | || || || || | Sbjct 361868 TATCGTTAAATACTTTCAACATAGGTACAATCCCATTGCTGGTCCCGTTTGTTCCACCAA 361809 Query 63508 TATAGCCTCCACTGGCACGAATATTACTAATTGATAGACCTATTCCCCCTGCCATTTTAG 63567 |||| ||| ||||||| || ||| || || ||| || || ||||| ||| | Sbjct 361808 TATAAGATCCCGTGGCACGGATGTTATGGATGCTTAAACCAATACCACCTGCGCTTTGTG 361749 Query 63568 AGATTAATGCGCATCGTTTTAACGTGTCATAGATGCCTTCTATGCTATCATCGATCATGT 63627 | ||| ||| | ||||||| || || || || ||||| || || || || |||| Sbjct 361748 AAATTTTAGCGGTTTGTTTTAAAGTATCGTAAATTCCTTCAATACTGTCGTCCTGCATGG 361689 Query 63628 TAAGTAGAAAACAGCTAGACATTTGGTGACGAGTAGTTCCCGCATTAAATAAGGTAGGAG 63687 | |||| ||| ||| ||||||||| | || || | ||||||||||| || || | Sbjct 361688 TCAGTAAAAAGCAGGAAGACATTTGAGGTTTAGGGGTAGCTGCATTAAATAAAGTTGGGG 361629 Query 63688 AAGCGTGCGTAAACCATTTTTCAGAAAGTAGATTGTACGTCTCAATAGCTGAGTCTATAT 63747 || ||||||||||| ||| | || || ||||| |||| || || |||| Sbjct 361628 TTGCATGCGTAAACCAGCGCTCACTCATCAGGTTATACGTTGCAATCGCACTTTCAATAT 361569 Query 63748 CCCATTGATGAATTCCTACTGCGACACGCATTAACATGTGCTGAGGTCTTTCAACAATTT 63807 | || ||||| ||||| || |||||||| |||| || || || | ||| ||||||| Sbjct 361568 CTTCTTTGTGAATCCCTACGGCAACACGCATAAACAAATGTTGCGGGCGTTCTACAATTT 361509 Query 63808 TGTTGTT-TATTTTCAACAAGTAGGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTAT 63866 || || |||||||| || ||||||||||| | |||||||| |||||||| | | || Sbjct 361508 -GTCCTTCTATTTTCAGCAGATAGGATTTTTCAAGGGTTTTAAACCCAAAATAATCGAAT 361450 Query 63867 GAAAAGTCTCGTTCGTAAATAAT-------AACCGAATTGAGCTTATCCTTATATTTGTT 63919 ||| || | || |||||||| | |||| || | || | |||| | Sbjct 361449 CCAAAATCCCTGTCATAAATAATGGTGCTGTCCAGAAT----CTCTGCATTTTCTTTGAT 361394 Query 63920 AAC--TATATCCATGGTAATACTTGAAATAATCGGAGAATGTTTCCCATTTTTAGGATTA 63977 || | ||| || || ||| | | || | ||| | |||| | || Sbjct 361393 CACCTCCCAAACATCGT-----CTGCAATCAGTGAAGCAGATTTGTCTGTTTTGGAATCC 361339 Query 63978 ACATAGTTGAATAAATC--CTCCATCACTTCACTAAATAGtttttttGTTTCCTTGTGTA 64035 |||||||| ||| | | |||||| || || ||| | || | |||||| | Sbjct 361338 ACATAGTT--ATACAGCATCTCCATGGTTTTGGAGAAAGATTTCGTGGTGTTCTTGTGCA 361281 Query 64036 GATTTGATATGGCTATTCTGGCGGCTAGAATGGCATAATCCGGATGTTGTGTAGTACAAG 64095 |||| |||| || || | || || | | |||||||| ||||| | || || | Sbjct 361280 GATTAGATACCGCAATACGGGAAGCCAATAATGCATAATCAGGATGCTTGGTGGTCAGCG 361221 Query 64096 TGGCTGCTATTTCGGCTGCCAGAGTGTCCAATTCTACCGTTGTTACTCCATTATATATTC 64155 ||||| |||| || ||||| | |||| |||| || ||||| |||| || | | Sbjct 361220 AAGCTGCCGTTTCCGCAGCCAGGTTATCCAGTTCTGAGGTGGTTACCCCATCGTACAAAC 361161 Query 64156 CTTGAATAACCTTCATAGCTATTTTAATAGGATCTATATGATCCGTGTTTAAGCCATAGC 64215 ||| ||| ||||| | || | | ||| ||||| | | || | || |||||||||| Sbjct 361160 CTTCAATTACCTTTTTCGCCACATCAATCGGATCCACCAGTTCTGCATTAAAGCCATAGC 361101 Query 64216 ACAATTTTCTAATACGAGACGTGATTTTATCAAA 64249 | | ||| |||||| | || |||||||| || Sbjct 361100 AGAGCTTTTCAATACGGGCGGTTATTTTATCGAA 361067 Score = 248 bits (274), Expect = 1e-60 Identities = 583/876 (67%), Gaps = 7/876 (1%) Strand=Plus/Minus Query 33289 TTTTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTTCCTTCCAATGATATAT 33348 ||||||| || |||||||||||||| || || ||||| ||||| |||| || || || Sbjct 360853 TTTTTTGATAATCACCCACACGTTTCTCAAAGAAATTGGTTTTGCCTTGCAGGGAGATCA 360794 Query 33349 TTTCCATGAAATCAAACGGATTGGTAACATTGTAAAtttttttAAATCCCAATTCAGAAA 33408 | ||||| ||||||||||||||||| ||| || ||||| || | |||| ||| | Sbjct 360793 TCTCCATAAAATCAAACGGATTGGTGGCATGATATATTTTGGTATAACCCAGTTCCTGCA 360734 Query 33409 TCAATCTATCTGCGACGAATTCTATATATGTTTTCATCATTTCACAATTCATTCCTATGA 33468 | |||| ||||| || || || ||||| | ||||| || |||||| || || | Sbjct 360733 GCCATCTGTCTGCAACAAACTCAATATACTGTGACATCAGTTTTGCATTCATCCCGATCA 360674 Query 33469 GTTTAACTGGAAGAGCCACAGTAAGAAATTCTTGTTCAATGGATACCGCATTTGTTATAA 33528 | ||| || | || | |||| |||||| | ||| || |||||| | |||| Sbjct 360673 GGGCAACCGGCAAGGCATCTGTAATAAATTCCTTTTCGATTTCTACCGCGTCGCGGATAA 360614 Query 33529 TAAATCTAACGGTTTCTTCACTCGGTGGATGTAATAAATGTTTAAACATCAAACATGCGA 33588 | |||| ||| | ||| || || | | |||| | | || || || | Sbjct 360613 TTCCATGAACGACTTCCTGGCTCAGTTTATTTTTGAGCATTTTATAAAGCAGGCAGGCAA 360554 Query 33589 AATCGCAGTGCAGACCCTCGTCTCTACTAATTAATTCGTTAGAAAACGTGAGTCCGGGCA 33648 | || || |||| ||||| ||||| ||| || || ||| ||| || || || |||| Sbjct 360553 ATTCACAATGCATCCCCTCATCTCTGGAAATCAACTCATTACTAAAGGTTAGCCCTGGCA 360494 Query 33649 TTAGGCCACGCTTTTTAAGCCAAAATATGGAAGCGAATGATCCGGAAAAGAAGATTCCTT 33708 | ||||| | ||||| | ||| || || ||| ||| ||| ||||| || |||| Sbjct 360493 TCAGGCCTCTTTTTTTCAACCAGAAGATCGAACAGAAGCTCCCGCTGAAGAAAATGCCTT 360434 Query 33709 CTACTGCAGCAAAGGCAATAAGTCTCTCTCCATAACCGGCGCTGTCATGTATCCACTTTT 33768 | ||||| || || || | | | || || || ||| ||| ||||| Sbjct 360433 CCACTGCGGCGAAAGCCACCAAACGTTCGGCAAAATTTCCGCCCTCA---ATCCAGCGCA 360377 Query 33769 GAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCATTAAAGAGATAGt 33828 ||||| || || || || ||||||||||| | ||| |||| ||||| || || || Sbjct 360376 ATGCCCATTCTGCTTTTTTCTTTACACAAGGAACCGTCTCTACGGCATGGAACAGCCTGT 360317 Query 33829 ttttttCATTACTATCTTTAACATAAGTATCGATCAAAAGACTATACATTTCCGAATGAA 33888 |||||| | | |||||||| ||| |||||||||| || ||| |||| || || | Sbjct 360316 CTTTTTCTTCAGGATCTTTAATATAGGTATCGATCAGCAGCGCATAGGTTTCAGAGTGGA 360257 Query 33889 TGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTGCACTTCTG 33948 ||||||| || ||||| || || || ||||| | || |||| || ||| ||||| | Sbjct 360256 TGTTTTCCATCATGATCTGGAAGCCATAAAAACAACGGGCTTCGGGAAGCTGTACTTC-G 360198 Query 33949 TACAAAATCGTT--CTGCTAAATTTTCATTCACTATTCCATCACTGGCTGCAAAAAACGC 34006 || | ||| |||| | |||||||| || || || ||||| || |||||||| || Sbjct 360197 CTCATGA-AGTTCACTGCAAGGTTTTCATTTACAATGCCGTCACTTGCAGCAAAAAAAGC 360139 Query 34007 CAATACATGTTTTATAAAATATTTTTCGTCTGGTGTTAGTTTATTCCAATCATTGATATC 34066 | || ||| || |||| ||| ||| ||| || | ||| | || || Sbjct 360138 AAGTATATGAGAAATGAAATGACGCTCGCCTGTATTTAAGTTGTCCCAGTGCTTCTGGTC 360079 Query 34067 TTTAGATATATCCACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTATACATATT 34126 | ||| | || | |||||| | ||||| || ||| || ||| |||||||| | Sbjct 360078 ATCAGAAAGGTCAATTTCTTCAGCGGTCCAGAAACTTGCTTCACTCTTCTTATACATTTC 360019 Query 34127 CCAGATGTCATGATATTGGATTGGGAAAATAACAAA 34162 |||||| ||| | |||| || || |||| |||||| Sbjct 360018 CCAGATTTCAGGGTATTTAATAGGCAAAAGAACAAA 359983 >seq3533 Length=1137 Score = 196 bits (216), Expect = 6e-45 Identities = 416/608 (68%), Gaps = 15/608 (2%) Strand=Plus/Minus Query 33569 TTTAAACATCAAACATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAATTCGTT 33628 |||| ||| || || || || |||||||| ||||||||||| | ||| || | ||||| Sbjct 967 TTTATACAGCATGCAAGCAAAGTCGCAGTGTAGACCCTCGTCACGACTGATCAGCTCGTT 908 Query 33629 AGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGAAGCGAATGA 33688 ||||| || || || ||||||| || | || || | ||| | |||| | | || | Sbjct 907 GGAAAAGGTAAGGCCTGGCATTAAACCCCTTTTCTTCAACCAGTAGATGGCA-CAAAAGC 849 Query 33689 T-CCGGAAAAGAAGATTCCTTCTACTGCAGCAAAGGCAATAAGTCTCTCTCC--AT-AAC 33744 | ||| |||||||| || || || |||||||| || | | | || | || ||| Sbjct 848 TGCCGCTGAAGAAGATACCCTCAACCGCAGCAAATGCCACCAAACGTTCGGCGAATGAAC 789 Query 33745 CGGCGCTGTCATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCG 33804 | | || || ||||| | ||||| || |||||||| ||||| || |||| Sbjct 788 AAGAGTTGG--TG-ATCCAGCGCAGCGCCCACTCTGCCTTCTTCTTTACGGCGGGGATCG 732 Query 33805 TTTCTATGGCATTAAAGAGATAGtttttttCATTACTATCTTTAACATAAGTATCGATCA 33864 | ||||| || || || || | | ||| | | ||| |||||| || || ||||||| Sbjct 731 TCTCTATCGCGTTGAAAAGCTCCTGTTTCTTTGTGCTACTTTTAACGTATGTGTCGATCA 672 Query 33865 AAAGACTATACATTTCCGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATC 33924 ||||||| || | || | |||||||| ||||| || |||||||| || ||||| || | Sbjct 671 AAAGACTGTAGGTCTCTGCGTGAATGTTCTCAATCGCGATCTGAAAGCCATAGAAGCAGC 612 Query 33925 TAGCCTCGGTAATCTGCACTTCTGTACA-AAATCGTTCTGCTAAATTTTCATTCACTATT 33983 ||||| | || || || || | ||| ||||| || | ||| ||||| || || Sbjct 611 GGGCCTCTGGTATTTGTACCTCAG-ACATGAATCGAGTGGCGAGATTCTCATTGACGATA 553 Query 33984 CCATCACTGGCTGCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTCTGGTGTT 34043 || || || ||||| || |||| |||| | ||||| | | ||||| || || Sbjct 552 CCGTCTGATGCGGCAAAGAATGCCAGCACATTGGTGATAAAGTGTCGTTCGT-TGTCATT 494 Query 34044 -AGTTTATT---CCAATCATTGATATCTTTAGATATATCCACTTCTTCCACTGTCCAAAA 34099 || || || |||||| || ||||| || | || | ||| || ||||||| || Sbjct 493 GAGCTTGTTCTCCCAATCGTTCATATCAGAAGCCAAGTCTAATTCCTCTGCTGTCCAGAA 434 Query 34100 TGATGCCTCTGCCTTTTTATACATATTCCAGATGTCATGATATTGGATTGGGAAAATAAC 34159 ||| || ||||| || || ||||||| ||| ||||| || || ||| ||||| | ||| Sbjct 433 TGAAGCTTCTGCTTTCTTGTACATATCCCATATGTCTGTATGTTTGATAGGGAAGAGAAC 374 Query 34160 AAATCTAT 34167 ||||||| Sbjct 373 GAATCTAT 366 >seq1043 Length=1979 Score = 168 bits (186), Expect = 8e-37 Identities = 402/597 (67%), Gaps = 13/597 (2%) Strand=Plus/Plus Query 33574 ACATCAAACATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAATTCGTTAGAAA 33633 ||| |||||| || || |||||||||| ||||||||| | ||| || | ||||| || | Sbjct 208 ACAGCAAACAGGCAAAGTCGCAGTGCAAACCCTCGTCACGACTGATCAGCTCGTTCGAGA 267 Query 33634 ACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGAAGCGAATGATCCGG 33693 ||| | ||| |||||| || ||||| || |||||||| || || ||| || Sbjct 268 ACGACAAGCCGTGCATTAAACCGCGCTTCTTGAGCCAAAAGATCGAGCAGAAACTGCCAC 327 Query 33694 AAAAGAAGATTCCTTCTACTGCAGCAAAGGCAATAAGTCTCTCTCC--ATAACCG-GCGC 33750 ||||||||| || || || || |||||||| | | | ||| | || | || ||| Sbjct 328 TAAAGAAGATACCCTCGACAGCGGCAAAGGCGACCAAACGCTCGGCGAATGAGCGAGCGT 387 Query 33751 TGTCATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTA 33810 || || ||||| ||||| ||||| ||||| || || || || || || | Sbjct 388 TGG--TG-ATCCAGCGCAAGGCCCAGTCGGCTTTCTTCTTAACGGCGGGGATAGTCTCGA 444 Query 33811 TGGCATTAAAGAGATAGtttttttCATTACTATCTTTAACATAAGTATCGATCAAAAGAC 33870 |||| | ||||| ||| || | | | | || | || || ||||| | ||||| Sbjct 445 TGGCGTGGAAGAGCATGTTCTTCTTCTCGGTGTTCTTGATGTAGGTGTCGATGAGAAGAC 504 Query 33871 TATACATTTCCGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCCT 33930 | || | || || || ||||| || ||||| || || ||||| |||||||| | |||| Sbjct 505 TGTAGGTCTCAGAGTGGATGTTCTCGATGGCGATTTGGAATCCATAGAAACAACGTGCCT 564 Query 33931 CGGTAATCTGCACTTCTGTACAA-AATCGTTCTGCTAAATTTTCATTCACTATTCCATCA 33989 | | |||||||| || | ||| || ||| || | ||| || || || || || || Sbjct 565 CTGGGATCTGCACCTCAG-ACATGAAGCGTGTGGCAAGATTCTCGTTGACAATGCCGTCC 623 Query 33990 CTGGCTGCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTC-TGGTGTTAGTTT 34048 || ||||| || |||| ||| || | ||||| | |||| | || | || || Sbjct 624 GATGCGGCAAAGAAGGCCAGTACGTGAGTGATAAAGTGACGCTCGTTATCGT-TCAGCTT 682 Query 34049 ATTC---CAATCATTGATATCTTTAGATATATCCACTTCTTCCACTGTCCAAAATGATGC 34105 ||| ||||| | || || | | | ||| | ||||| ||||||| || ||||| Sbjct 683 GTTCTCCCAATCGTGAATGTCGCTTGCCAGATCGATCTCTTCGGCTGTCCAGAAAGATGC 742 Query 34106 CTCTGCCTTTTTATACATATTCCAGATGTCATGATATTGGATTGGGAAAATAACAAA 34162 ||||||||| || ||||| ||||| ||||| | | | ||| ||||| | ||||| Sbjct 743 CTCTGCCTTCTTGTACATGTTCCAAATGTCCGGGTGCTTGATAGGGAAGAGTACAAA 799 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 629595376732560