Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acytostelium_20leptosomum_20[genbank_20GCA_5F900092245.1_202017-01- 02] 28,227 sequences; 57,256,845 total letters Query= NC_003324.1 Length=57416 Score E Sequences producing significant alignments: (Bits) Value seq2182 275 2e-69 seq271 96.9 1e-15 >seq2182 Length=6766 Score = 275 bits (304), Expect = 2e-69 Identities = 553/818 (68%), Gaps = 4/818 (0%) Strand=Plus/Plus Query 43184 GCCGTCCTCGACGGCGAGCTTGTTGAGCGAGCGCCAATCCGAGCCAGCCTCGACGAAGGC 43243 |||||| ||||| ||| |||| ||||| ||||| ||| ||| || || |||||||| Sbjct 2486 GCCGTCTTCGACATTCAGCCTGTTCAGCGATCGCCAGTCCTTGCCCGCTTCAACGAAGGC 2545 Query 43244 AAGGCGCACCCACGTCTTCCACTGCAGCGAAGGAACACGATGTAGGGGGCCGCCTGCAGG 43303 || | || ||| ||||| | ||| || || || || | || ||||| | Sbjct 2546 CAGCCTCAACCAAGTCTTGAAAAACAGGTTCGGTACGCGGTGCATTGGACCGCCGTCGAA 2605 Query 43304 GTCGCCTGGCAGCGGCAGTTTCTCAAGGATTTCGCCGACGCCTCGCAGGCGCTTCTTTTC 43363 | ||| || || |||| | ||||| ||||| || || || ||| || | Sbjct 2606 ATGGCCGGGGAGAGGCATACGGCCCAGGATATCGCCTACCGAACGAAGCGACTTTTTCAC 2665 Query 43364 GGGCTCGTAAAGGAACGGAGGCACAGTCGGTTCGTGGCGCG--CAACAAGCAGGAAGCGC 43421 || || || | ||| ||||| | ||| || ||| | || |||||||| || Sbjct 2666 AGGTTCATAGATGAAGTCCGGCACCTT--GTTGATGTTGCGGCCGACGAGCAGGAATCGT 2723 Query 43422 TTGCGGCTCTGACCCAAACCGCCGATCTGACCGCAGTCGTGGGTGGTCTCGGCGACGGCG 43481 || ||| ||| | | || |||| || ||||| ||||| || |||||||| |||| Sbjct 2724 TTACGGGATTGAGCGAGGCCACCGAGCTCGCCGCAATCGTGCGTCGTCTCGGCAGTGGCG 2783 Query 43482 AAATTGTAGCTCCGCAGCAGGGCAATGATCTGATCGAGCAACTTGCGGCCACGGTTCATG 43541 | ||||| |||||||| || |||||||||||| | ||||||||| ||| | Sbjct 2784 TACCCGTAGCGGCGCAGCAGTTGAACGATCTGATCGAGGAGGCGGCGGCCACGATTCTGG 2843 Query 43542 ATGCGCGGCACATTTTCGAAAATGATCAGCTTGGGAAGCTTGTCCTTGAAGGCTTCCAGC 43601 ||||| ||||| || ||||||| |||||||| || || | |||| |||||| |||||| Sbjct 2844 ATGCGAGGCACGTTCTCGAAAACGATCAGCTCCGGGAGGTCATCCTGGAAGGCCTCCAGC 2903 Query 43602 ATCAGCCACACGCCGCGCAACGTCAGCCGATTGAGGGCCTGATACTTGGCGGTCGCGCTC 43661 |||||||| ||||| || | || || || || | ||||| |||||||||||| ||| Sbjct 2904 ATCAGCCATACGCCACGTAGGGTTAGACGGTTCAATGCCTGGTACTTGGCGGTCTTGCTG 2963 Query 43662 GACTGCTCGGACAGCAAGCCGGAGAAACCTTTGCATGGAGCGGACAAGAACACGATATCG 43721 | || ||||||| ||| ||| |||||||| || || || | ||| ||||||| | Sbjct 2964 CGGTTTTCCGACAGCAGTCCGCTGAACCCTTTGCAGGGGGCCGAGAGGAAGACGATATGG 3023 Query 43722 GGGAACTCGCCATGCGCTGCGCGCCGAATGTCGTCCGGTACCGCCTGCTGCCAATCGGGA 43781 ||| | ||||| || || | || || || ||| || | |||| || | Sbjct 3024 GGGTATTCGCCGCCGGCCGCATGACGGATATCTGCCGCAGTGGCTTCGCGCCACTCCCGC 3083 Query 43782 TCAGGGTCGCGACTGTGAAAGGCCCGGTACTGCTCCAGGTCGAACAGATCGAGCAGGGTG 43841 || || | ||| ||| || | |||| || | ||||| |||||||| | ||| Sbjct 3084 GGCGGCTCTTTGCCGTGGAAGTCCTTGAACTGATCACGATCGAAGAGATCGAGGACGGTT 3143 Query 43842 CCGGGAACGCCGGCAAGGCGCGTGAAATCACGGATGGCCGCCGGATCGTTGTCGATGCCC 43901 ||| || ||| ||||| ||||| ||||| || |||| | | ||||||||| Sbjct 3144 CCGCGAGATCCGCTGAGGCGTTCAAAATCCCGGATTGCTGCCGCGTTGACGTCGATGCCA 3203 Query 43902 CCGATGCAGCGGAACTTGGCATTCAGACTACCGACACGAGCCGATCCCTTGTTGAAGCCT 43961 |||||||||||||||||| | | || | || || |||| | |||||||| ||| Sbjct 3204 CCGATGCAGCGGAACTTGCCTTGGAGGTTCCCTACGCGAGGGTTGGCTTTGTTGAAACCT 3263 Query 43962 TTGGCGCCGGCACCGAGCCCGCAAAACAGATGAAAGTG 43999 || || || | || |||||||| ||||| || || || Sbjct 3264 TTAGCTCCACCGCCCAGCCCGCAGAACAGGTGGAAATG 3301 Score = 82.4 bits (90), Expect = 3e-11 Identities = 139/199 (70%), Gaps = 2/199 (1%) Strand=Plus/Plus Query 41910 GTCTCGCCGGTCATGGCGAGCAGCAGTGTGGTTCCCATAACGTCGGCGATCGCAGTCGCC 41969 |||| ||| || | | || || || ||||| || | | ||| ||||||| || Sbjct 1356 GTCTGCCCGCTCCAGACCAGGAGTAGGGTGGTACCGAACGCCTCGCCGATCGCTTCGGCT 1415 Query 41970 GCATCCGGAGGTACCGCGTTCCCGATGCGCTCTCGCCAAGCGGAATCGGACTGGCCGTCG 42029 |||||||| || |||||||| ||||| ||||| | ||| | |||||| | |||||| Sbjct 1416 GCATCCGGGGGCACCGCGTTGCCGATCCGCTCCCTCCAGTCACCATCGGAGAGCCCGTCG 1475 Query 42030 AGGGTGA-ATATCTCGTCTGGATCAACGAGGCTCTGCAACGCCGCTAACTCGAGAGTGGT 42088 || | ||| ||| || || || | ||||| || | ||| | ||||| ||||| Sbjct 1476 AGTTCCAGATA-CTCTTCCGGCTCGATCAGGCTTTGGAGCGCACAGAGTTCGAGCGTGGT 1534 Query 42089 GAACGGACGATGCCACGTG 42107 ||| ||||||||||| ||| Sbjct 1535 GAAGGGACGATGCCAGGTG 1553 >seq271 Length=183270 Score = 96.9 bits (106), Expect = 1e-15 Identities = 144/202 (71%), Gaps = 2/202 (1%) Strand=Plus/Plus Query 44066 GATCATGCCGAGCGCTGCGAGGTAGGTGTCGAGGATGGCCTCTTGCTCCATCCGCTCGTC 44125 || ||||||||| || | ||| |||||||| || || | ||| | ||||||| Sbjct 70028 GACCATGCCGAGGGCGTTCATGTACAGCTCGAGGATCGCTTCCTCTTCCTTGCGCTCGTT 70087 Query 44126 GGTGTCCTGCTTGCGCAGCGAGATCACCTTCCGCAGGATCTTGGCATCGAAGCCGGTCCC 44185 | |||| ||||||||| || | | | || | |||||||| ||| ||||| || Sbjct 70088 CGCATCCTTCTTGCGCAGGCGGACGATCGTGCGGATGATCTTGGTGTCGTAGCCGCGGCC 70147 Query 44186 CTTTGCCTC-GCCGTACACATCCTTGATGTCGTCGGCGATGGTCTTCTTTTCTTCCTCCA 44244 ||| || || ||| | ||| |||||||||||||| | || ||||||||||||| | Sbjct 70148 CTTGGCTTCCGCCAT-CACTTCCTTGATGTCGTCCTGAAGCGTGGTCTTTTCTTCCTCAA 70206 Query 44245 AGCGTTCGATGCGGTGGATGAA 44266 ||| |||||||| | |||||| Sbjct 70207 GGCGCTCGATGCGCTCGATGAA 70228 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 183548054865372