Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acytostelium_20leptosomum_20[genbank_20GCA_5F900092245.1_202017-01- 02] 28,227 sequences; 57,256,845 total letters Query= NC_003356.1 Length=42575 Score E Sequences producing significant alignments: (Bits) Value seq373 138 3e-28 seq4332 105 2e-18 seq501 105 2e-18 seq422 82.4 2e-11 >seq373 Length=63667 Score = 138 bits (152), Expect = 3e-28 Identities = 439/667 (66%), Gaps = 24/667 (4%) Strand=Plus/Plus Query 22577 TTGAACCCTGGCAGTTGTTCTGTATTTGTGTTGTGTTTGGGTGGGTGAGAAAAAAGAGCG 22636 ||||| |||||||| |||| | || | || |||||| ||||| | || |||| | Sbjct 14055 TTGAAGCCTGGCAGAAGTTCGCTCTTGGCGTACCGTTTGGATGGGTAAACAAGAAGACAG 14114 Query 22637 GCCTGCGTCGATTTCGC-GAGGCTTACAACGAAATACCCCGTAAAAACGGGAAATCAGCA 22695 |||||||||| |||| | || || | ||| | ||| | || ||||||||||| || Sbjct 14115 GCCTGCGTCG-TTTCTCTGAAATCTATATCGAGGTGCCCAGGAAGAACGGGAAATCCGCT 14173 Query 22696 ATGTCTGCTGGCGTTGGTCTGTATATGTTTGCCTGC-GATGATGAATTTGGCGCTGAAGT 22754 || | |||| || || ||||||||| ||| |||| || ||| || ||||| Sbjct 14174 ATTGCCGCTGCTGTAGGAAATTATATGTTTTG-TGCAGATGGCGAGCATGGTGCAGAAGT 14232 Query 22755 GTATTCCGGGGCCACAACAGAGAAACAGGCGTGGGAAGTTTTTCGTCCAGCCAGACTGAT 22814 |||| ||| ||||| || || |||||||| ||| | || ||| ||| || | || Sbjct 14233 CTATTGCGGCGCCACGACTGAAAAACAGGCATGGAAGGTATTTTCTCCGGCGCTGCAAAT 14292 Query 22815 GGCGCAAC-GCA--CGGAACCATTGCGTGAAGCATTTGGTATTGAAGTACATGCTCAAAG 22871 || | || || ||| ||||||| || ||| || || || ||| Sbjct 14293 GGTGAAAAAGCTGCCGG---CATTGCGGCAAAAATTCTCGATAAAACCTTGGGCAAAAAA 14349 Query 22872 CATGAGCCGTCCGGAGGACGGTGCCCGTTTTGAACCGTTGATTGGAGATCCCGGAGACGG 22931 |||| || || || |||| | ||||| || |||| || || || || || || Sbjct 14350 AATGACGCGCCCTGA---CGGTTCGGTTTTTGCGCCTGTGATCGGTGACCCGGGGGATGG 14406 Query 22932 CGCGTCGCCGAGTTGCGCCCTCATTGATGAATATCACGAGCATCAGACCGATGCGCTTTA 22991 | ||||| |||||| ||||||||||||||||||| ||| || ||||||||||| Sbjct 14407 TGATTCGCCATCATGCGCCATCATTGATGAATATCACGAACATACTACTGATGCGCTTTA 14466 Query 22992 CCAGACGATGCAAACTGGGATGGGGGCACGTCGTCAGCCGCTGATTTTTGGTATCACCAC 23051 | || ||| || || |||||||| ||| || ||| ||| | |||||||| Sbjct 14467 CACTACCATGACCACCGGTATGGGGGCTCGTGAACAACCGATGACACTGATCATCACCAC 14526 Query 23052 TGCGGGCTATAACATTGAAGGACCATGCTACGACAAACGTCGTGAAGTGATCGAAATGCT 23111 || |||||| ||||| | || ||||| || || ||| | | || |||| || || Sbjct 14527 CGCCGGCTATGACATTACATCCCCTTGCTATGAAAAGCGTACTCAGGTTGTCGAGATCCT 14586 Query 23112 ----TGAAGGGATTGTGCCCA--ATGATGAA---CTGTTCGGGATTATTTATACCATTGA 23162 ||| | || | | | ||||| | || ||| | |||||| | |||| Sbjct 14587 GCGGAGAACCCGTAATGGCGAGGAAAATGAAACCATATTTGGGCTGATTTATGGCCTTGA 14646 Query 23163 CGACGGGGATGACTGGACAGATCCGGCGGTATTGCGTAAAGCGAACCCCAA-TATGGGGA 23221 |||| ||||||||||| ||| | || ||| || || |||||||| ||| || | Sbjct 14647 TGACGATGATGACTGGACGACTCCTGAGGCATTAATCAAGGCAAACCCCAACTAT-GGCA 14705 Query 23222 TTTCTGT 23228 |||| || Sbjct 14706 TTTCGGT 14712 Score = 82.4 bits (90), Expect = 2e-11 Identities = 78/98 (80%), Gaps = 4/98 (4%) Strand=Plus/Plus Query 21630 AACTGTCGACCACATCATCCCGAAAGCGCATGGCGGAACAGACGCAGACAGCAACCTGCA 21689 || |||||||||||| || || ||||| |||||||| || |||| || ||| ||| Sbjct 12316 AAGTGTCGACCACATTATTCCCAAAGCTCATGGCGGTACCGACGACGATTCCAATCTG-- 12373 Query 21690 GAGTC--TGTGCTGGCCCTGCCACAAAGCGAAAACAGC 21725 ||||| |||||||| ||||||| | |||||||||||| Sbjct 12374 GAGTCGTTGTGCTGGTCCTGCCATAGAGCGAAAACAGC 12411 >seq4332 Length=4020 Score = 105 bits (116), Expect = 2e-18 Identities = 278/417 (67%), Gaps = 8/417 (2%) Strand=Plus/Minus Query 30400 ACGGCGTGGCGACGGCTTATGTGGAAGGCGGC-ACGTTGCGGATCCAGCGTTCCGTAACC 30458 ||||| | || || ||||| |||||||| |||| ||| || ||||| || | ||| Sbjct 3641 ACGGCATCGCCACCGCTTACTACGAAGGCGGTTACGT-GCGCATTCAGCGGGCCATCACC 3583 Query 30459 ACATACAAAAAGAATGCATATGGCGTGGCAGACAACAGCTATCTGGACAGTGAAACACTG 30518 || ||| | ||||| || | ||| ||| ||||| |||||||||||| ||||| ||| Sbjct 3582 ACTTACCAGAAGAACGCGTTCGGCCAGGCGGACAATTCCTATCTGGACAGCGAAACCCTG 3523 Query 30519 CATACCAG--CGCATATGTTCTTCGCAAACTGAAATCGGTCATCACAAGCAAGTACGGAC 30576 | ||||| || | | | | ||| ||| | || ||||| ||||||||||| | Sbjct 3522 C--ACCAGTCGGCCTTTATCGTGCGCCGCCTGCAGAGCGTGATCACCAGCAAGTACGGGC 3465 Query 30577 GCCACAAGCTGGCAAATGATGGTACCCGTTTTGGTCCTGGGCAGGCGATTGTTACTCCTG 30636 ||||||| || || ||| || || || ||||| | || ||| |||| || || || Sbjct 3464 GCCACAAACTCGCTGCTGACGGCACGCGCTTTGGCGCCGGCCAGCCGATCGTCACCCCGA 3405 Query 30637 CCGTTATCAAAGGGGAGCTTCTGGCGACATATCGTC-AGATGGAGCGTGCCGGTATTGTG 30695 | ||| || ||||| | || || || | || | || | | || |||| Sbjct 3404 GCACCATCCGCGGTGAGCTGATTGC-CCAGTACGCCAAGCTCGAACTGGAAGGCCATGTG 3346 Query 30696 GAAAATTACGATCTGTTTAAACAGTATCTGATAGTTGAGCGTGATGCGGATAACCCGAAC 30755 || || ||| ||||| || | ||||| || ||||| || | |||||| | Sbjct 3345 GAGAACGCCGAGCTGTTCGCCGAGCACCTGATCGTCGAGCGCGACAGCCAGGACCCGAGC 3286 Query 30756 CGACTGAACACGCTGTTCCCGCCGGATTATGTTAACCAGTTACGTGTCTTTGCGGTG 30812 || | ||| |||||||||||||||||| || ||| | | || || || ||| || Sbjct 3285 CGGGTCAACGTGCTGTTCCCGCCGGATTACGTCAACGGGCTGCGGGTGTTCGCGCTG 3229 >seq501 Length=12468 Score = 105 bits (116), Expect = 2e-18 Identities = 80/93 (86%), Gaps = 1/93 (1%) Strand=Plus/Plus Query 17142 TTATTATCCTGCGCC-CGGCCCTTTAGCTAAGTGGTGAGAGCGAGCGACTCATAATCGCC 17200 |||| |||| |||| |||||| |||||| |||||| ||||| ||||||||||||||| Sbjct 4764 TTATAATCCCTCGCCACGGCCCCTTAGCTCAGTGGTTAGAGCAGGCGACTCATAATCGCT 4823 Query 17201 AGGTCGCTGGTTCAAATCCAGCAAGGGCCACCA 17233 |||||||||||||| ||||||| ||||||||| Sbjct 4824 TGGTCGCTGGTTCAAGTCCAGCAGGGGCCACCA 4856 >seq422 Length=1870 Score = 82.4 bits (90), Expect = 2e-11 Identities = 54/60 (90%), Gaps = 0/60 (0%) Strand=Plus/Minus Query 15528 TATCCTGTTAAGAGTGGTTACTTCGCCACACAGCTTAAACCCGCCGCCTGGCGGGTTTTT 15587 ||| ||||||||||||||||||||| |||||||||||||||||||| | || ||||||| Sbjct 292 TATGCTGTTAAGAGTGGTTACTTCGTCACACAGCTTAAACCCGCCGTCGAGCTGGTTTTT 233 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 136072773707838