Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acytostelium_20leptosomum_20[genbank_20GCA_5F900092245.1_202017-01- 02] 28,227 sequences; 57,256,845 total letters Query= NC_003444.1 Length=37074 Score E Sequences producing significant alignments: (Bits) Value seq4332 122 2e-23 seq373 100 7e-17 seq62 89.7 1e-13 seq501 84.2 5e-12 >seq4332 Length=4020 Score = 122 bits (134), Expect = 2e-23 Identities = 299/449 (67%), Gaps = 6/449 (1%) Strand=Plus/Minus Query 8516 CGGTTCACGATGACCGAGCAGCAGACCCTGCTGTCTCATGGCGTGGCAACGGCGTATGTC 8575 || ||||| ||||||||| || | ||||| | ||| | || || || || | Sbjct 3678 CGCTTCACTCTGACCGAGCGCCAATCGCTGCTCAACTACGGCATCGCCACCGCTTACTAC 3619 Query 8576 GAAAGCGGGGTGCTGCGCATTCAGCGTGATGTCACCACGTACAGGAAAAATGCTTACGGG 8635 ||| |||| ||||||||||||| | ||||||| ||| ||| || || | ||| Sbjct 3618 GAAGGCGGTTACGTGCGCATTCAGCGGGCCATCACCACTTACCAGAAGAACGCGTTCGGC 3559 Query 8636 GTTGCGGATAACAGCTACCTCGACAGCGAGACGCTGCATACCAGT--GCGTATGTACTGC 8693 ||||| || ||| || |||||||| || ||||| ||||| || | | | ||| Sbjct 3558 CAGGCGGACAATTCCTATCTGGACAGCGAAACCCTGCA--CCAGTCGGCCTTTATCGTGC 3501 Query 8694 GCAAACTGAAATCCGTCATTACCAGTAAGTACGGGCGTCACAAGCTTGCCAGCGACGGTA 8753 || ||| | ||| || ||||| ||||||||||| ||||| || || ||||| | Sbjct 3500 GCCGCCTGCAGAGCGTGATCACCAGCAAGTACGGGCGCCACAAACTCGCTGCTGACGGCA 3441 Query 8754 CCCGCTTTGGTCCCGGTCAGGCGATTGTCACCCCGGCGGTAATCAAAGGGGAACTGCTGG 8813 | |||||||| |||| ||| |||| ||||||||| ||| || || ||| | | Sbjct 3440 CGCGCTTTGGCGCCGGCCAGCCGATCGTCACCCCGAGCACCATCCGCGGTGAGCTGATTG 3381 Query 8814 CAACCTACCGTCAGCTTGAGCGTGCGGGGATCGTGGAAAACTACGAACTGTTTAAGCAGT 8873 | ||| |||| || | | || ||||| ||| ||| ||||| || Sbjct 3380 CCCAGTACGCCAAGCTCGAACTGGAAGGCCATGTGGAGAACGCCGAGCTGTTCGCCGAGC 3321 Query 8874 ACCTGGTTGTGGAGCGTGA-TGCCAGCGTTCCGAACCGCCTGAACACGCTGTTCCCGCCT 8932 ||||| | || ||||| || ||||| | |||| ||| | ||| |||||||||||| Sbjct 3320 ACCTGATCGTCGAGCGCGACAGCCAG-GACCCGAGCCGGGTCAACGTGCTGTTCCCGCCG 3262 Query 8933 GACTATGTTAACCAGTTGCGTGTTTTTGC 8961 || || || ||| | |||| || || || Sbjct 3261 GATTACGTCAACGGGCTGCGGGTGTTCGC 3233 >seq373 Length=63667 Score = 100 bits (110), Expect = 7e-17 Identities = 318/485 (66%), Gaps = 11/485 (2%) Strand=Plus/Plus Query 842 CGTTTGGCTGGGTCAATAAAGGCTCCCGGCTGCGCCGCTTCAGGGAGGTGTATACCGAAA 901 ||||||| ||||| || || | | ||||| || ||| || | |||| ||| Sbjct 14088 CGTTTGGATGGGTAAACAAGAAGACAGGCCTGCGTCGTTTCTCTGAAATCTATATCGAGG 14147 Query 902 TCCCCCGTAAGAACGGCAAATCGGCAATCTCTGCCGGTGTTGCCCTGTAT-TGTTTTGCC 960 | ||| | |||||||| ||||| || || | || | ||| | ||| ||||||| Sbjct 14148 TGCCCAGGAAGAACGGGAAATCCGCTATTGCCGCTGCTGTAGGAAATTATATGTTTTG-- 14205 Query 961 TGT-GATAACGAGTTCGGCGCGGAAGTGTATTCCGGTGCCACGACAGAGAAACAGGCGTG 1019 || ||| |||| || || ||||| |||| ||| |||||||| || |||||||| || Sbjct 14206 TGCAGATGGCGAGCATGGTGCAGAAGTCTATTGCGGCGCCACGACTGAAAAACAGGCATG 14265 Query 1020 GGAAGTCTTTCGCCCGGCGCGACTGATG-TGTAAACGCACACC-CATGCTGACGGAAGCG 1077 | | || ||| ||||||| | ||| || ||| || | ||| || | || Sbjct 14266 GAAGGTATTTTCTCCGGCGCTGCAAATGGTGAAAAAGCTGCCGGCAT--TGCGGCAAAAA 14323 Query 1078 TTCGGGATTGAGGTTAACGCCTCAAACATGAACCGTCCGGAGGATGGCGCGCGGTTTGAA 1137 ||| ||| | | || ||| |||| || || || | | || |||| Sbjct 14324 TTCTCGATAAAACCTTGGGCAAAAAAAATGACGCGCCCTGACGGTT---CGGTTTTTGCG 14380 Query 1138 CCGCTGATCGGCAACCCCGGTGATGGTTCATCACCCCACTGTGCCGTGGTTGATGAATAT 1197 || ||||||| |||| || |||||| || || || ||| | ||||||||||| Sbjct 14381 CCTGTGATCGGTGACCCGGGGGATGGTGATTCGCCATCATGCGCCATCATTGATGAATAT 14440 Query 1198 CACGAGCATGCCACCGATGCGCTTTATACCACAATGCTTACCGGGATGGGGGCGCGACGT 1257 ||||| ||| | || ||||||||||| || || ||| ||||| |||||||| || Sbjct 14441 CACGAACATACTACTGATGCGCTTTACACTACCATGACCACCGGTATGGGGGCTCGTGAA 14500 Query 1258 CAGCCACTGATGTGGGCCATCACCACCGCCGGGTACAACATTGAGGGGCCGTGCTACGAC 1317 || || ||| | ||||||||||||||| || ||||| || ||||| || Sbjct 14501 CAACCGATGACACTGATCATCACCACCGCCGGCTATGACATTACATCCCCTTGCTATGAA 14560 Query 1318 AAGCG 1322 ||||| Sbjct 14561 AAGCG 14565 Score = 84.2 bits (92), Expect = 5e-12 Identities = 151/218 (69%), Gaps = 2/218 (1%) Strand=Plus/Plus Query 2018 CCAATATGTCCGATCCGATGAAAGAGCTGGAAGCAGCGATTGAATCGGGACGCTTTCATC 2077 || ||||| ||||| |||| |||| | || || ||| | ||||| | || |||| Sbjct 15267 CCCATATGAGTGATCCTATGAGAGAGATTGAGGCTGCGCTCATCTCGGGGAGATTCCATC 15326 Query 2078 ATGACGGCAATCCCATCATGACCTGGTGTATCGGCAATGTGGTCGGCAAAAACATGCCAG 2137 ||||||| | || |||||| ||||||||| |||| | |||||| | || | || | Sbjct 15327 ATGACGGACACCCTGTCATGAACTGGTGTATTTCCAATATCGTCGGCCAGTACCTTCCCG 15386 Query 2138 GTAACGATGATTTAGTGAAGCCCGTCAAGGAGCAGGCGG-AAAACAAAATCGATGGTGCG 2196 | | || ||| | ||| |||| || || ||||| | ||||| || ||||||||| Sbjct 15387 GAAGTGACGATATTGTGCGTCCCGGGAAAGA-AGGGCGGCAGAACAAGATAGATGGTGCG 15445 Query 2197 GTTGCACTGATTATGACGATCGGTCGGGCAATGCTCAA 2234 |||| | || ||| | | || || || |||||||| Sbjct 15446 GTTGGTTTAATGATGGGGCTGGGGCGCGCCATGCTCAA 15483 >seq62 Length=1393 Score = 89.7 bits (98), Expect = 1e-13 Identities = 51/52 (98%), Gaps = 0/52 (0%) Strand=Plus/Plus Query 20592 ATTCGTAATGCGAAGGTCGTAGGTTCGACTCCTATTATCGGCACCATTTAAA 20643 ||||||||||||||||||||||||||||||||||||||||||||||||| || Sbjct 25 ATTCGTAATGCGAAGGTCGTAGGTTCGACTCCTATTATCGGCACCATTTCAA 76 >seq501 Length=12468 Score = 84.2 bits (92), Expect = 5e-12 Identities = 63/74 (85%), Gaps = 0/74 (0%) Strand=Plus/Minus Query 20716 ATCGAGTCTATTTGCCGTGCGTGTTCGGTAAGGTGATTAGGTGCAAGGTGAGCATATCGA 20775 || ||||| ||||| |||||||| || || | || |||||||| ||||||||||||||| Sbjct 10943 ATTGAGTCAATTTGACGTGCGTGCTCAGTTAAATGGTTAGGTGCCAGGTGAGCATATCGA 10884 Query 20776 CGAACCATTTCGAT 20789 || ||||||||||| Sbjct 10883 CGGACCATTTCGAT 10870 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 118475474223464