Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acytostelium_20leptosomum_20[genbank_20GCA_5F900092245.1_202017-01- 02] 28,227 sequences; 57,256,845 total letters Query= NC_003529.1 Length=155060 Score E Sequences producing significant alignments: (Bits) Value seq8653 116 4e-21 seq19 104 2e-17 seq1351 98.7 1e-15 seq3381 96.9 3e-15 >seq8653 Length=1535 Score = 116 bits (128), Expect = 4e-21 Identities = 164/228 (72%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 139538 CCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTC 139597 || || || | ||||| || ||||| | |||||||| || |||||||| || |||| Sbjct 194 CCTCCACGGAGACGCAGCACCAAGTGGAGGGTAGACTCCTTCTGAATGTTGTAGTCGCCG 253 Query 139598 ATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 139657 | |||| |||||| || || || || ||| |||||| |||||| |||||||| || Sbjct 254 AGAGTGCGACCGTCTTCAAGTTGCTTGCCGGCAAAGATCAAACGTTGTTGATCGGGTGGG 313 Query 139658 ATGCCTTCTTTGTCGGTGATTTTTTG-TTTTAGCTGTTCCACTGTGTCGGTGGGCTCCAC 139716 || ||||||||||| ||| | |||| || | | || | ||||| | | ||| || Sbjct 314 ATACCTTCTTTGTC-TTGAATCTTTGCCTTGACGTTCTCGATAGTGTCAGAGCCCTCGAC 372 Query 139717 CTCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCAT 139764 ||| | || | ||||| || ||||| || ||||| || |||||||| Sbjct 373 CTCTAGTGTGATGGTCTTTCCAGTCAATGTCTTTACAAAGATTTGCAT 420 >seq19 Length=770976 Score = 104 bits (114), Expect = 2e-17 Identities = 337/519 (65%), Gaps = 12/519 (2%) Strand=Plus/Plus Query 52549 GTTCCGTGTGTGCGCAAAAAGGATGATTGGGCATTGAAATGGATCGAAAACGACAAAGCC 52608 ||||| ||||| ||||| | || ||||||||| ||||| || || || Sbjct 360343 GTTCCTTGTGTAAAGAAAAAAGCAGAATGGGCATTGCGCTGGATTGAGGGCGGAAA---- 360398 Query 52609 ACTTTTGCCGAACGTCTGGTCGCGTTTGCTATAGTGGAAGGTGTGtttttttCGGGTAGT 52668 ||||||||||||| |||| || || || ||||||||| | || || || || Sbjct 360399 --TTTTGCCGAACGTTTGGTGGCTTTCGCCGCAGTGGAAGGCATTTTCTTCAGCGGGAGC 360456 Query 52669 TTTGCGGCAATATTTTACATCAAAACCTTGGGCATAATGCCCGGCCTCACGTTTAGCAAC 52728 || | || || | | |||| ||| | ||||| || || || ||||| || Sbjct 360457 TTCTGTTCGATCTTCTGGTTGAAAAAAAGAGGCCTGATGCCAGGGCTAACCTTTAGTAAT 360516 Query 52729 GAGTTGATATCGCGCGACGAAGGAATGCACACAGATTTTGCGTGTTTGTATTATAATACG 52788 |||||||| || | || || || ||||| || ||||| || || |||||| | | Sbjct 360517 GAGTTGATTTCCAGAGATGAGGGGATGCATTGTGAATTTGCCTGCCTGCTTTATAAAATG 360576 Query 52789 CGCGTTAAAGAAAAATTGTCATATGAAAAAATTCTAGACATGTTTAAAGAGGCCGTCGAC 52848 | | ||| | ||| || | ||| ||| | || | || || || || Sbjct 360577 CTC---AAAAATAAACTGAGCCAGGAAGTCGTTCATGGAATTATCCGCGACGCGGTAGAA 360633 Query 52849 ATTGAAAAAGAGTTTTTTACGGACGCTTTACCCGTATCATTGTTGGGCATGAACGCGACC 52908 || ||||| || ||| |||| || || || || || | || | || ||||| || | Sbjct 360634 ATCGAAAAGGAATTTATTACAGATGCCTTGCCGGTTGCCCTGATCGGGATGAATGCAAAA 360693 Query 52909 ATGATGTGCGAGTACATCGAGTTTGTTGCGGACAGACTGTTGATGCAGCTCGGTCA-GCC 52967 |||||| |||| || ||||||||||| |||||| | || | | || ||| | || Sbjct 360694 CTGATGTCACAGTATATTGAGTTTGTTGCAGACAGATGGCTGCAGGAACTGGGTTATACC 360753 Query 52968 GAAATACTATAATGCGCGTAACCCCTTTTCGTTTATGAACAACATATCGCTCGAGGGCAA 53027 ||||| ||| |||| || || ||| |||||| | | || || || | ||||| Sbjct 360754 AAAATA-TATCATGCCACCAATCCGTTTGATTTTATGGAGATGATCTCCCTGCAAGGCAA 360812 Query 53028 AACAAACTTTTTCGAGAGACGTGTGGGCGAGTA-CAAAA 53065 ||| || || || |||| ||||||||| || || ||||| Sbjct 360813 AACCAATTTCTTTGAGAAACGTGTGGGTGATTATCAAAA 360851 >seq1351 Length=12664 Score = 98.7 bits (108), Expect = 1e-15 Identities = 162/232 (70%), Gaps = 2/232 (1%) Strand=Plus/Minus Query 139538 CCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTC 139597 || || || | ||| | ||| ||||||| || ||||| ||||||||||| || || | Sbjct 4702 CCTCCACGGAGACGAAGAACCAAGTGAAGGGTGGACTCCTTTTGAATGTTGTAGTCACCG 4643 Query 139598 ATTGTGC-TCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGG 139656 | |||| || | || || || || || || ||| |||||| ||||||||| ||||| || Sbjct 4642 AGGGTGCGTCCA-TCCTCAAGTTGCTTGCCGGCAAAGATCAAACGTTGCTGGTCGGGTGG 4584 Query 139657 TATGCCTTCTTTGTCGGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCAC 139716 || || || ||||| ||| || || | | || | ||||||| ||| || Sbjct 4583 GATACCCTCCTTGTCCTGGATCTTGNNCTTGACGTTCTCGATGGTGTCGGATCCCTCGAC 4524 Query 139717 CTCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCATAGCT 139768 ||| | ||| | |||||||| || | || || ||||| || |||||| || Sbjct 4523 CTCGAGGGTGATGGTCTTGCCAGTGAGGGTCTTGACGAAGATCTGCATACCT 4472 Score = 98.7 bits (108), Expect = 1e-15 Identities = 154/218 (71%), Gaps = 2/218 (1%) Strand=Plus/Minus Query 139552 CAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGAGTC 139611 ||| || ||||||| || ||||| |||||||||||||| |||| | |||| || Sbjct 5144 CAATACCAAGTGAAGGGTGGACTCCTTTTGAATGTTATAGTCGCCAAGAGTGCGACCATC 5085 Query 139612 TTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTC 139671 || ||||| || || ||| |||| ||||| ||||| ||||| || || || || ||||| Sbjct 5084 CTCAAGCTGCTTGCCGGCAAAGATGAGACGCTGCTGGTCGGGTGGGATTCCCTCCTTGTC 5025 Query 139672 GGTGATTTTTTG-TTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCG 139730 ||| | || | || | | || | ||||| | | ||| ||||||| || | | Sbjct 5024 -TTGAATCTTGGCCTTGACGTTCTCGATGGTGTCAGAGCCCTCAACCTCAAGTGTGATGG 4966 Query 139731 TCTTGCCGGTCAACGTTTTTACGAATATTTGCATAGCT 139768 ||||||| || | || || ||||| || |||||| || Sbjct 4965 TCTTGCCAGTGAGGGTCTTGACGAAGATCTGCATACCT 4928 Score = 82.4 bits (90), Expect = 8e-11 Identities = 159/232 (69%), Gaps = 2/232 (1%) Strand=Plus/Minus Query 139538 CCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTC 139597 || || || | ||| | || ||||||| || ||||| ||||||||||| || || | Sbjct 4930 CCTCCACGGAGACGGAGCACCAAGTGAAGGGTGGACTCCTTTTGAATGTTGTAGTCACCG 4871 Query 139598 ATTGTGC-TCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGG 139656 | |||| || | || || ||||| || || ||| |||| ||||| ||||| ||||| || Sbjct 4870 AGGGTGCGTCCA-TCCTCAAGCTGCTTGCCGGCAAAGATGAGACGCTGCTGGTCGGGTGG 4812 Query 139657 TATGCCTTCTTTGTCGGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCAC 139716 || || || ||||| ||| || || | | || | ||||||| ||| || Sbjct 4811 AATACCCTCCTTGTCTTGGATCTTGGCCTTGACGTTCTCGATGGTGTCGGATCCCTCGAC 4752 Query 139717 CTCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCATAGCT 139768 ||| | || | ||||| || || | || || || || ||||||||| || Sbjct 4751 CTCCAGAGTGATGGTCTTTCCAGTTAGAGTCTTCACAAAGATTTGCATACCT 4700 >seq3381 Length=12314 Score = 96.9 bits (106), Expect = 3e-15 Identities = 143/203 (70%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 139562 TGAATCGTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGAGTCTTCGAGCTGT 139621 |||| || |||||||| || ||||| || || | | |||| || |||||||| Sbjct 933 TGAAGAGTGGACTCTTTCTGGATGTTGTAGTCACCGAGGGTGCGACCATCCTCGAGCTGC 874 Query 139622 TTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTGATTTTT 139681 || |||||| |||| ||||| ||||||||||| || || || || || || ||| || Sbjct 873 TTGCCAGCAAAGATGAGACGCTGCTGATCGGGTGGGATACCCTCCTTATCTTGGATCTTA 814 Query 139682 TGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGTCTTGCCGGTC 139741 || | | ||| | ||||||| | ||| ||||| | || | |||||||| ||| Sbjct 813 GCCTTAACATTTTCAATAGTGTCGGAGCCCTCAACCTCCAGTGTGATGGTCTTGCCAGTC 754 Query 139742 AACGTTTTTACGAATATTTGCAT 139764 || || || || || |||||||| Sbjct 753 AAAGTCTTAACAAAGATTTGCAT 731 Score = 87.8 bits (96), Expect = 2e-12 Identities = 146/211 (69%), Gaps = 0/211 (0%) Strand=Plus/Minus Query 139555 AACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGAGTCTTC 139614 ||| ||||| | ||||| || ||||||||||| || |||| | || | || || Sbjct 1396 AACCAAGTGGAGAGTAGATTCCTTTTGAATGTTGTAGTCGCCAAGAGTACGACCATCCTC 1337 Query 139615 GAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGT 139674 ||| || || || ||| |||| ||||||||||||||||| || || || || || || Sbjct 1336 GAGTTGCTTGCCGGCAAAGATGAGACGTTGCTGATCGGGTGGGATACCCTCCTTATCTTG 1277 Query 139675 GATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGTCTT 139734 ||| || || | | || | || || | ||| ||||| | ||| | ||||| Sbjct 1276 GATCTTGGCCTTGACGTTCTCGATAGTATCCGAACCCTCAACCTCGAGGGTGATAGTCTT 1217 Query 139735 GCCGGTCAACGTTTTTACGAATATTTGCATA 139765 |||||||| || || || || ||||||||| Sbjct 1216 TCCGGTCAAAGTCTTCACAAAGATTTGCATA 1186 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 495888970018400