Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acytostelium_20leptosomum_20[genbank_20GCA_5F900092245.1_202017-01- 02] 28,227 sequences; 57,256,845 total letters Query= NC_004062.1 Length=119217 Score E Sequences producing significant alignments: (Bits) Value seq8653 96.9 3e-15 seq3382 95.1 9e-15 seq3381 95.1 9e-15 seq1351 89.7 4e-13 >seq8653 Length=1535 Score = 96.9 bits (106), Expect = 3e-15 Identities = 158/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 42883 CCTCCACGCAGTCTTAACACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCGGAC 42942 |||||||| || | | |||||| |||| || |||||| || | ||||| ||| Sbjct 194 CCTCCACGGAGACGCAGCACCAAGTGGAGGGTAGACTCCTTCTGAATGTTGTAGTCGCCG 253 Query 42943 AATGTACGTTCGTCGTCCAATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCGGC 43002 | || || |||| || | ||| ||||||||||| ||||| || |||||||||| || Sbjct 254 AGAGTGCGACCGTCTTCAAGTTGCTTGCCGGCAAAGATCAAACGTTGTTGATCGGGTGGG 313 Query 43003 ACACCTTCTTTTTCGCTGATCAACTCTTTGACTCTGCCAACTGTGTCGCCAGCCTCGACG 43062 | ||||||||| || ||| | ||||| | | | ||||| ||||||| Sbjct 314 ATACCTTCTTTGTCTTGAATCTTTGCCTTGACGTTCTCGATAGTGTCAGAGCCCTCGACC 373 Query 43063 TCTACCGTTATAGTTTTTCCGGTTAGAGTTTTCACAAAAATTTGCATT 43110 |||| || || || ||||| || | || || ||||| ||||||||| Sbjct 374 TCTAGTGTGATGGTCTTTCCAGTCAATGTCTTTACAAAGATTTGCATT 421 >seq3382 Length=4522 Score = 95.1 bits (104), Expect = 9e-15 Identities = 157/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 42883 CCTCCACGCAGTCTTAACACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCGGAC 42942 |||||||| || | | |||||| || | ||| ||||||||| | ||||| || || Sbjct 4179 CCTCCACGGAGACGGAGCACCAAGTGAAGGGTGGACTCCTTTTGGATGTTGTAGTCAGAG 4120 Query 42943 AATGTACGTTCGTCGTCCAATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCGGC 43002 | ||||| |||| ||||| || || |||||||| || | ||||| || |||| || Sbjct 4119 AGGGTACGACCGTCCTCCAACTGCTTTCCGGCAAAGATGAGACGCTGCTGGTCGGGTGGG 4060 Query 43003 ACACCTTCTTTTTCGCTGATCAACTCTTTGACTCTGCCAACTGTGTCGCCAGCCTCGACG 43062 | || || || || |||| | ||||| | | | || ||| | |||| || Sbjct 4059 ATTCCCTCCTTGTCTTGGATCTTGGCCTTGACGTTCTCGATGGTATCGGAACCCTCAACC 4000 Query 43063 TCTACCGTTATAGTTTTTCCGGTTAGAGTTTTCACAAAAATTTGCAT 43109 || | || || || |||||||| ||||| || || ||||||||||| Sbjct 3999 TCAAGGGTGATGGTCTTTCCGGTCAGAGTCTTGACGAAAATTTGCAT 3953 >seq3381 Length=12314 Score = 95.1 bits (104), Expect = 9e-15 Identities = 157/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 42883 CCTCCACGCAGTCTTAACACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCGGAC 42942 |||||||| ||||| | ||||| |||| ||| |||||||| | ||||| ||| Sbjct 1413 CCTCCACGGAGTCTGAGAACCAAGTGGAGAGTAGATTCCTTTTGAATGTTGTAGTCGCCA 1354 Query 42943 AATGTACGTTCGTCGTCCAATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCGGC 43002 | ||||| | || || | ||| ||||||||||| || | || || ||||||| || Sbjct 1353 AGAGTACGACCATCCTCGAGTTGCTTGCCGGCAAAGATGAGACGTTGCTGATCGGGTGGG 1294 Query 43003 ACACCTTCTTTTTCGCTGATCAACTCTTTGACTCTGCCAACTGTGTCGCCAGCCTCGACG 43062 | ||| || || || |||| | ||||| | | | || || | |||| || Sbjct 1293 ATACCCTCCTTATCTTGGATCTTGGCCTTGACGTTCTCGATAGTATCCGAACCCTCAACC 1234 Query 43063 TCTACCGTTATAGTTTTTCCGGTTAGAGTTTTCACAAAAATTTGCAT 43109 || | || ||||| |||||||| | ||| |||||||| |||||||| Sbjct 1233 TCGAGGGTGATAGTCTTTCCGGTCAAAGTCTTCACAAAGATTTGCAT 1187 >seq1351 Length=12664 Score = 89.7 bits (98), Expect = 4e-13 Identities = 156/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 42883 CCTCCACGCAGTCTTAACACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCGGAC 42942 |||||||| || | | |||||| || | ||| ||||||||| | ||||| || Sbjct 4930 CCTCCACGGAGACGGAGCACCAAGTGAAGGGTGGACTCCTTTTGAATGTTGTAGTCACCG 4871 Query 42943 AATGTACGTTCGTCGTCCAATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCGGC 43002 | || ||| | || || | || ||||||||||| || | ||||| || |||| || Sbjct 4870 AGGGTGCGTCCATCCTCAAGCTGCTTGCCGGCAAAGATGAGACGCTGCTGGTCGGGTGGA 4811 Query 43003 ACACCTTCTTTTTCGCTGATCAACTCTTTGACTCTGCCAACTGTGTCGCCAGCCTCGACG 43062 | ||| || || || |||| | ||||| | | | |||||| ||||||| Sbjct 4810 ATACCCTCCTTGTCTTGGATCTTGGCCTTGACGTTCTCGATGGTGTCGGATCCCTCGACC 4751 Query 43063 TCTACCGTTATAGTTTTTCCGGTTAGAGTTTTCACAAAAATTTGCAT 43109 || | || || || ||||| |||||||| |||||||| |||||||| Sbjct 4750 TCCAGAGTGATGGTCTTTCCAGTTAGAGTCTTCACAAAGATTTGCAT 4704 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 381238402541166