Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acytostelium_20leptosomum_20[genbank_20GCA_5F900092245.1_202017-01- 02] 28,227 sequences; 57,256,845 total letters Query= NC_004105.1 Length=209771 Score E Sequences producing significant alignments: (Bits) Value seq19 318 8e-82 seq3533 196 6e-45 >seq19 Length=770976 Score = 318 bits (352), Expect = 8e-82 Identities = 1038/1584 (66%), Gaps = 40/1584 (3%) Strand=Plus/Minus Query 71441 AATAAATGGTTTCGAAAATCTTCTTATTGAGATCTTGTGCTTCCGGGCTATCAAATGGAT 71500 ||||||| ||||| ||||| | ||||| | | || ||| | || |||||||| Sbjct 362630 AATAAATCGTTTCAAAAATTTCTTTATTTAAAATTTTTGCCCCTTCACTTTCAAATGGTA 362571 Query 71501 AATTTAAGAGAATAAACGCGTCTGCTAATCCTTGAACGCCAATACCGATAGGTCTGTGTC 71560 || | || ||||| || ||||| ||||| || || || | ||| | |||||||| | Sbjct 362570 AACGCATCAGGATAAAAGCATCTGCCAATCCCTGTACACCTAAACCAACTGGTCTGTGGC 362511 Query 71561 TCTTATTAGAAATTTCAGCTTCTGGAATAGGATAATAATTAATATCTATAATTTTATTGA 71620 | | || ||| ||| |||||| | |||||||||||| ||| ||||||||||| | Sbjct 362510 GCATGTTGGAATTTTTAGCTTCCTCTACCGGATAATAATTATGATCAATAATTTTATTCA 362451 Query 71621 GATTTCTGACTATTACT--TTGACCACATCCTTTAGTTTGAGAAAATCAAATCTC-CCAT 71677 | || | | || || | | ||||| | || ||| || |||||| ||| || | Sbjct 362450 GGTT-CAGGGTAGC-CTGATAGGTTACATCATATAATTTCTGATGATCAAA-CTCTCCGT 362394 Query 71678 CTATTACAAA-CACGTTCAAGGCAACAGATGCCAGATTACAAACGGCTACCTCAT--TAG 71734 || ||||| | | ||| |||| || ||||| ||||| || || ||||| | | | Sbjct 362393 TGATGACAAATCTTGGCAAAGCCAAC-GAGGCCAGGTTACATACAGCAACCTCGTCTTTG 362335 Query 71735 CATCGGCATATTGTATAATTTCAGTGCAAAGATTACTACACTTGATGGTTCCTAAATTTT 71794 | | ||| | ||||||||| || ||||| || || ||||||||||||||||||| Sbjct 362334 GAA--GTATACTCTATAATTTCTGTACAAAGGTTGGAACTTTTGATGGTTCCTAAATTTT 362277 Query 71795 GTTGATTACTCTTTTTGTTACACGCATCCTTATAAAGAATAAACGGAGTACCAGTTTCAA 71854 | || || || |||| ||||| ||||| | | | | || || || ||||||| Sbjct 362276 GCTGGTTGGATTTGCTGTTTGCTGCATCTTTATACAACAGATAAGGGGTTCCGGTTTCAA 362217 Query 71855 TCTGAGATTCTATAATCGCTTTCCAGACGACTCGAGCCTTTATTATATT-CTTGTATCTC 71913 |||| || || | ||| || ||| | || | || || || | || | | | || Sbjct 362216 TCTGTGAATCCAGAATGGCAAACCAAAGCTCTTGTGCTTTAATGGTTTTACGGGCACGTC 362157 Query 71914 TTTTCTCTTTCGTATTGTGTATATAATCGTTCGAACTCGTCTCCCCAAGCATTGT-CTAA 71972 || || ||||||| | |||||| ||||| || | || ||||| | | | | Sbjct 362156 CTT-CTTTTTCGTAACGCTCATATAAAGCATCGAATTCTGCACCA-AAGCAATCTGCCAG 362099 Query 71973 TCCAGGACATTCATTCGGACACATCAATGACCACTCTCCATCATCATTTACTCGTTTCAT 72032 ||| || ||||| ||||| | || ||| ||||| | || | ||| | | |||| Sbjct 362098 TCCCGGGGCTTCATGAGGACAGAATAAACTCCAGTCTCCGTTTTCTTCTACCCTTCTCAT 362039 Query 72033 AAAGAGATCAGGAATCCAAAGAGCTATA-AATAGATCTCTGGTTCTATGCTCCTCGTTTC 72091 || || ||| | |||||| || ||| |||| |||||||| | | | || || || | Sbjct 362038 GAACAGGTCACATACCCAAAGGGC-ATAGAATAAATCTCTGGCACGAAGTTCTTCTTTAC 361980 Query 72092 CTGTATTCTTTTTA---AGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGT 72148 | || |||||| || || || || || | ||| | |||||| || |||| || Sbjct 361979 C---ATGGTTTTTACGCAGGTCCAGAAAACTCAGCACATCTGCATGCCATGGCTCCAGGT 361923 Query 72149 ATATGGCCATAACTCCCGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTAT 72208 | ||||| | | | || ||||| ||| ||||| || | || | ||||| | | Sbjct 361922 AAATGGCAAAAGCACCTTTACGTTTACCTCCACCCTGGTCCACATAACGGGCGGTATCGT 361863 Query 72209 TATAAACTCTCAACATTGGAATAATACCATTGGATGCACCATTGGTCCCGGAGATATAGC 72268 || | ||| ||||||| || | ||| |||||| | || || || || ||||| Sbjct 361862 TAAATACTTTCAACATAGGTACAATCCCATTGCTGGTCCCGTTTGTTCCACCAATATAAG 361803 Query 72269 TTCCACTGGCACGAATATTGCTAATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTA 72328 ||| ||||||| || || || || ||| || || ||||| ||| || ||| Sbjct 361802 ATCCCGTGGCACGGATGTTATGGATGCTTAAACCAATACCACCTGCGCTTTGTGAAATTT 361743 Query 72329 ATGCGCATCGTTTTAACGTATCATAGATGCCCTCTATACTATCATCCATCATGTTAAGTA 72388 ||| | ||||||| ||||| || || || || ||||| || ||| |||| | |||| Sbjct 361742 TAGCGGTTTGTTTTAAAGTATCGTAAATTCCTTCAATACTGTCGTCCTGCATGGTCAGTA 361683 Query 72389 GAAAACAGCTAGACATTTGGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGT 72448 ||| ||| ||||||||| | | || | ||||||||||| || || | || | Sbjct 361682 AAAAGCAGGAAGACATTTGAGGTTTAGGGGTAGCTGCATTAAATAAAGTTGGGGTTGCAT 361623 Query 72449 GCGTAAACCATTTTTCAGACAGTAGATTGTACGTCTCAATAGCTGATTCTATATCCCATT 72508 |||||||||| ||| || || || ||||| |||| || ||| ||||| || Sbjct 361622 GCGTAAACCAGCGCTCACTCATCAGGTTATACGTTGCAATCGCACTTTCAATATCTTCTT 361563 Query 72509 GATGTATTCCTACCGCGACACGCATTAACATATGCTGAGGTCTTTCAACGATCTTGTTAT 72568 || || ||||| || |||||||| |||| ||| || || | ||| || || |||| | Sbjct 361562 TGTGAATCCCTACGGCAACACGCATAAACAAATGTTGCGGGCGTTCTACAAT-TTGTCCT 361504 Query 72569 T-TATTTTCAACAAGTAGGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAG 72627 | |||||||| || ||||||||||| | |||||||| |||||||| | | || ||| Sbjct 361503 TCTATTTTCAGCAGATAGGATTTTTCAAGGGTTTTAAACCCAAAATAATCGAATCCAAAA 361444 Query 72628 TCTCGTTCGTAAATAAT--AACCGAATTGAGTTTAT-CCTTATATTTGTTAAC--TATAT 72682 || | || |||||||| | | || | | | | || | |||| | || | Sbjct 361443 TCCCTGTCATAAATAATGGTGCTGTCCAGAATCTCTGCATTTTCTTTGATCACCTCCCAA 361384 Query 72683 CCATGGTGATACTTGAAATAATCGGAGAATGTTTCCCATTTTTAGGATTAACATAGTTGA 72742 ||| || || ||| | | || | ||| | |||| | || |||||||| Sbjct 361383 ACATCGT-----CTGCAATCAGTGAAGCAGATTTGTCTGTTTTGGAATCCACATAGTT-- 361331 Query 72743 ATAAATC--CTCCATCACTTCACTAAATAGtttttttGTTTCCTTGTGTAGATTTGATAC 72800 ||| | | |||||| || || ||| | || | |||||| ||||| ||||| Sbjct 361330 ATACAGCATCTCCATGGTTTTGGAGAAAGATTTCGTGGTGTTCTTGTGCAGATTAGATAC 361271 Query 72801 GGCTATTCTGGCGGCTAGAATGGCATAATCTGGATGTTGTGTAGTACAAGTGGCTGCTAT 72860 || || | || || | | |||||||| ||||| | || || | ||||| | Sbjct 361270 CGCAATACGGGAAGCCAATAATGCATAATCAGGATGCTTGGTGGTCAGCGAAGCTGCCGT 361211 Query 72861 TTCTGCTGCCAGAGTGTCCAATTCTACCGTTGTTACTCCATTATATATTCCTTGGATAAC 72920 ||| || ||||| | |||| |||| || ||||| |||| || | |||| || || Sbjct 361210 TTCCGCAGCCAGGTTATCCAGTTCTGAGGTGGTTACCCCATCGTACAAACCTTCAATTAC 361151 Query 72921 CTTCATAGCTATTTTAATAGGATCTATATGATCAGTGTTTAAGCCATAACATAATTTTCT 72980 ||| | || | | ||| ||||| | | || | || |||||||| || | ||| Sbjct 361150 CTTTTTCGCCACATCAATCGGATCCACCAGTTCTGCATTAAAGCCATAGCAGAGCTTTTC 361091 Query 72981 AATACGAGACGTGATTTTATCAAA 73004 |||||| | || |||||||| || Sbjct 361090 AATACGGGCGGTTATTTTATCGAA 361067 Score = 242 bits (268), Expect = 5e-59 Identities = 584/877 (67%), Gaps = 9/877 (1%) Strand=Plus/Minus Query 41772 TTTTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTCTTTCCTTCCAATGATATAT 41831 ||||||| || |||||||||||||| || || ||||| || || |||| || || || Sbjct 360853 TTTTTTGATAATCACCCACACGTTTCTCAAAGAAATTGGTTTTGCCTTGCAGGGAGATCA 360794 Query 41832 TTTCCATGAAATCAAACGGATTGGTAACATTATAAAtttttttAAATCCCAATTCAGAAA 41891 | ||||| ||||||||||||||||| ||| ||| ||||| || | |||| ||| | Sbjct 360793 TCTCCATAAAATCAAACGGATTGGTGGCATGATATATTTTGGTATAACCCAGTTCCTGCA 360734 Query 41892 TCAATCTATCTGCGATGAATTCTATATATGTTTTCATCATTTCACAATTCATTCCTATAA 41951 | |||| ||||| | || || ||||| | ||||| || |||||| || || | Sbjct 360733 GCCATCTGTCTGCAACAAACTCAATATACTGTGACATCAGTTTTGCATTCATCCCGATCA 360674 Query 41952 GTTTAACTGGAAGAGCCACAGTAAGAAATTCTTGTTCAATAGAGACCGCGTCTGTTATAA 42011 | ||| || | || | |||| |||||| | ||| || |||||||| |||| Sbjct 360673 GGGCAACCGGCAAGGCATCTGTAATAAATTCCTTTTCGATTTCTACCGCGTCGCGGATAA 360614 Query 42012 TAGATCTTACTGTTTCTTCACTCGGTGGATACAATAAATGTTTAAACATCAAACATGCGA 42071 | || ||| | ||| || || | |||| | | || || || | Sbjct 360613 TTCCATGAACGACTTCCTGGCTCAGTTTATTTTTGAGCATTTTATAAAGCAGGCAGGCAA 360554 Query 42072 AATCGCAGTGCAGACCCTCATCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCA 42131 | || || |||| ||||||||||| ||| || || || ||| || || || |||| Sbjct 360553 ATTCACAATGCATCCCCTCATCTCTGGAAATCAACTCATTACTAAAGGTTAGCCCTGGCA 360494 Query 42132 TTAGGCCACGCTTTTTAAGCCAAAATATAGACGCAAATGATCCAGAA-AAGAAGATTCCT 42190 | ||||| | ||||| | ||| || || || || | | ||| | ||||| || ||| Sbjct 360493 TCAGGCCTCTTTTTTTCAACCAGAAGATCGAA-CAGAAGCTCCCGCTGAAGAAAATGCCT 360435 Query 42191 TCTACTGCCGCAAAGGCAATAAGTCTCTCTCCATAACCGGCACTGTCATGTATCCACTTT 42250 || ||||| || || || | | | || || || | | ||| ||||| Sbjct 360434 TCCACTGCGGCGAAAGCCACCAAACGTTCGGCAAAATTTCCGCCCTCA---ATCCAGCGC 360378 Query 42251 TGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCATTAAAGAGATAG 42310 ||||| || || || || ||||||||||| | ||| |||| ||||| || || | Sbjct 360377 AATGCCCATTCTGCTTTTTTCTTTACACAAGGAACCGTCTCTACGGCATGGAACAGCCTG 360318 Query 42311 tttttttCATTACTATCTTTAACATATGTATCGATCAAAAGACTATACATTTCTGAATGA 42370 | |||||| | | |||||||| ||| |||||||||| || ||| |||| || || Sbjct 360317 TCTTTTTCTTCAGGATCTTTAATATAGGTATCGATCAGCAGCGCATAGGTTTCAGAGTGG 360258 Query 42371 ATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTGGCCTCGGTAACCTGTACTTCT 42430 |||||||| || ||||| || || || ||||| | ||| |||| || ||||||||| Sbjct 360257 ATGTTTTCCATCATGATCTGGAAGCCATAAAAACAACGGGCTTCGGGAAGCTGTACTTC- 360199 Query 42431 GTACAAAATCGTTCA--GCTAAATTTTCGTTCACTATTCCGTCACTGGCTGCAAAAAACG 42488 | || | ||||| || | ||||| || || || |||||||| || |||||||| | Sbjct 360198 GCTCATGA-AGTTCACTGCAAGGTTTTCATTTACAATGCCGTCACTTGCAGCAAAAAAAG 360140 Query 42489 CCAATACATGTTTTATAAAATATTTTTCGTCCGGTGTTAATTTATTCCAATCATTGATAT 42548 | | || ||| || |||| ||| | | |||| || | ||| | || | Sbjct 360139 CAAGTATATGAGAAATGAAATGACGCTCGCCTGTATTTAAGTTGTCCCAGTGCTTCTGGT 360080 Query 42549 CTTTAGATATATCTACTTCTTCTACCGTCCAAAATGATGCTTCTGCCTTTTTATACATAT 42608 | | ||| | || | |||||| | ||||| || |||||| ||| |||||||| | Sbjct 360079 CATCAGAAAGGTCAATTTCTTCAGCGGTCCAGAAACTTGCTTCACTCTTCTTATACATTT 360020 Query 42609 TCCAGATATCATGATATTGAATTGGGAAAATAACAAA 42645 |||||| ||| | |||| ||| || |||| |||||| Sbjct 360019 CCCAGATTTCAGGGTATTTAATAGGCAAAAGAACAAA 359983 >seq3533 Length=1137 Score = 196 bits (216), Expect = 6e-45 Identities = 485/725 (67%), Gaps = 21/725 (3%) Strand=Plus/Minus Query 41938 ATTCATTCCTATAAGTTTAACTGGAAGAGCCACAGTAAGAAATTCTTGTTCAATAGAGAC 41997 ||||||||| || || | |||||| || | | || | ||| |||| || |||||| Sbjct 1081 ATTCATTCCAATTAGATCAACTGGCAGCGAATCTGTGATAAACTCTTTCTCGCAAGAGAC 1022 Query 41998 CGCGTCTGTTATAATAGATCTTACTGTTTCTT-CACTCGGTGGATACAATAAATGTTTAA 42056 ||||| || ||||| || ||| || | || | || | || | | |||| Sbjct 1021 AGCGTCGCGGATGATAGACTCTATAGTTGCTGGCTCTAGACGG-TGCACCAGCTTTTTAT 963 Query 42057 ACATCAAACATGCGAAATCGCAGTGCAGACCCTCATCTCTACTAATTAATTCGTTGGAAA 42116 ||| || || || || |||||||| |||||||| || | ||| || | |||||||||| Sbjct 962 ACAGCATGCAAGCAAAGTCGCAGTGTAGACCCTCGTCACGACTGATCAGCTCGTTGGAAA 903 Query 42117 ACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATAGACGCAAATGATCCAG 42176 | || || || ||||||| || | || || | ||| | || | | |||| | | | | Sbjct 902 AGGTAAGGCCTGGCATTAAACCCCTTTTCTTCAACCAGTAGATGG-CACAAAAGCTGCCG 844 Query 42177 AA-AAGAAGATTCCTTCTACTGCCGCAAAGGCAATAAGTCTCTCTCC--ATAACCGGCAC 42233 |||||||| || || || || ||||| || | | | || | || | | | Sbjct 843 CTGAAGAAGATACCCTCAACCGCAGCAAATGCCACCAAACGTTCGGCGAATGAACAAGAG 784 Query 42234 TGTCATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTA 42293 | | || ||||| | ||||| || |||||||| ||||| || ||||| |||| Sbjct 783 T-TGGTG-ATCCAGCGCAGCGCCCACTCTGCCTTCTTCTTTACGGCGGGGATCGTCTCTA 726 Query 42294 TGGCATTAAAGAGATAGtttttttCATTACTATCTTTAACATATGTATCGATCAAAAGAC 42353 | || || || || | | ||| | | ||| |||||| ||||| ||||||||||||| Sbjct 725 TCGCGTTGAAAAGCTCCTGTTTCTTTGTGCTACTTTTAACGTATGTGTCGATCAAAAGAC 666 Query 42354 TATACATTTCTGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTGGCCT 42413 | || | |||| |||||||| ||||| || |||||||| || ||||| || | ||||| Sbjct 665 TGTAGGTCTCTGCGTGAATGTTCTCAATCGCGATCTGAAAGCCATAGAAGCAGCGGGCCT 606 Query 42414 CGGTAACCTGTACTTCTGTACA-AAATCGTTCAGCTAAATTTTCGTTCACTATTCCGTCA 42472 | | | ||||| || | ||| ||||| || | ||| || || || || ||||| Sbjct 605 CTGGTATTTGTACCTCAG-ACATGAATCGAGTGGCGAGATTCTCATTGACGATACCGTCT 547 Query 42473 CTGGCTGCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTCCGGTGTTAAT--- 42529 || ||||| || |||| |||| | ||||| | |||| || ||| | | Sbjct 546 GATGCGGCAAAGAATGCCAGCACATTGGTGATAAA----GTGTCGTTCGTTGTCATTGAG 491 Query 42530 ----TTATTCCAATCATTGATATCTTTAGATATATCTACTTCTTCTACCGTCCAAAATGA 42585 || | |||||| || ||||| || | |||| ||| ||| | ||||| ||||| Sbjct 490 CTTGTTCTCCCAATCGTTCATATCAGAAGCCAAGTCTAATTCCTCTGCTGTCCAGAATGA 431 Query 42586 TGCTTCTGCCTTTTTATACATATTCCAGATATCATGATATTGAATTGGGAAAATAACAAA 42645 |||||||| || || ||||||| ||| || || || || || ||||| | ||| || Sbjct 430 AGCTTCTGCTTTCTTGTACATATCCCATATGTCTGTATGTTTGATAGGGAAGAGAACGAA 371 Query 42646 TCTAT 42650 ||||| Sbjct 370 TCTAT 366 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 670902396922520