Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acytostelium_20leptosomum_20[genbank_20GCA_5F900092245.1_202017-01- 02] 28,227 sequences; 57,256,845 total letters Query= NC_004117.1 Length=158482 Score E Sequences producing significant alignments: (Bits) Value seq19 131 2e-25 seq8653 113 5e-20 >seq19 Length=770976 Score = 131 bits (144), Expect = 2e-25 Identities = 309/458 (67%), Gaps = 8/458 (2%) Strand=Plus/Plus Query 50406 TTTGGCCGAACGTTTAGTGGCGTTTGCCATAGTTGAAGGTGTGtttttttCCGGTAGCTT 50465 ||| ||||||||||| ||||| || ||| ||| ||||| | || || ||| ||||| Sbjct 360399 TTTTGCCGAACGTTTGGTGGCTTTCGCCGCAGTGGAAGGCATTTTCTTCAGCGGGAGCTT 360458 Query 50466 TGCAGCCATATTTTACATTAAAACCTTAGGCATAATGCCCGGCCTCACGTTTAGCAACGA 50525 | || || | | |||| |||| | ||||| || || || ||||| || || Sbjct 360459 CTGTTCGATCTTCTGGTTGAAAAAAAGAGGCCTGATGCCAGGGCTAACCTTTAGTAATGA 360518 Query 50526 GTTGATTTCGCGCGACGAAGGAATGCACACAGACTTTGCGTGTTTGTACTACAATACGCG 50585 ||||||||| | || || || ||||| || ||||| || || || || | || Sbjct 360519 GTTGATTTCCAGAGATGAGGGGATGCATTGTGAATTTGCCTGCCTGCTTTATAAAATGCT 360578 Query 50586 CGTAAATGAAAAATTATCATACGAAACAATTT-TGGACATGTTCAAAGAAGCCGTCGACA 50644 | |||| ||| | | | | ||| || |||| || || || || || || | Sbjct 360579 CAAAAAT--AAACTGAGCC-AGGAAGTCGTTCATGGA-ATTATCCGCGACGCGGTAGAAA 360634 Query 50645 TCGAAAAAGAGTTTTTCACGGACGCTTTACCCGTGGCATTGTTGGGCATGAACGCAGACA 50704 ||||||| || ||| | || || || || || || || || | || ||||| ||| | Sbjct 360635 TCGAAAAGGAATTTATTACAGATGCCTTGCCGGTTGCCCTGATCGGGATGAATGCAAAAC 360694 Query 50705 TGATGTGCGAGTACATTGAGTTTGTTGCAGACAGATTGTTGTTGCAGCTGGGACA-ACCG 50763 |||||| |||| |||||||||||||||||||||| | || | | ||||| | ||| Sbjct 360695 TGATGTCACAGTATATTGAGTTTGTTGCAGACAGATGGCTGCAGGAACTGGGTTATACCA 360754 Query 50764 AAATACTATAATGCACGTAACCCCTTTCCGTTTATGAATAACATATCGTTGGAGGGCAAA 50823 ||||| ||| |||| || || ||| |||||| | | || || || | |||||| Sbjct 360755 AAATA-TATCATGCCACCAATCCGTTTGATTTTATGGAGATGATCTCCCTGCAAGGCAAA 360813 Query 50824 ACAAACTTTTTCGAAAGACGTGTAGGCGAATA-CAAAA 50860 || || || || || | |||||| || || || ||||| Sbjct 360814 ACCAATTTCTTTGAGAAACGTGTGGGTGATTATCAAAA 360851 >seq8653 Length=1535 Score = 113 bits (124), Expect = 5e-20 Identities = 161/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 142958 CCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTC 143017 ||||| || | ||||| || || || | ||||| || || || |||||||| |||| Sbjct 194 CCTCCACGGAGACGCAGCACCAAGTGGAGGGTAGACTCCTTCTGAATGTTGTAGTCGCCG 253 Query 143018 ATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 143077 | |||| |||||| ||||| || || ||| |||||| |||||| |||||||| || Sbjct 254 AGAGTGCGACCGTCTTCAAGTTGCTTGCCGGCAAAGATCAAACGTTGTTGATCGGGTGGG 313 Query 143078 ATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTACT 143137 || ||||||||||| ||| ||| || | | || | ||||| | | || || Sbjct 314 ATACCTTCTTTGTCTTGAATCTTTGCCTTGACGTTCTCGATAGTGTCAGAGCCCTCGACC 373 Query 143138 TCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCAT 143184 || | || | ||||| || |||||||| ||||| || |||||||| Sbjct 374 TCTAGTGTGATGGTCTTTCCAGTCAATGTCTTTACAAAGATTTGCAT 420 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 506835506306640