Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acytostelium_20leptosomum_20[genbank_20GCA_5F900092245.1_202017-01- 02] 28,227 sequences; 57,256,845 total letters Query= NC_004156.2 Length=231621 Score E Sequences producing significant alignments: (Bits) Value seq1043 203 5e-47 seq6392 145 1e-29 seq3533 120 4e-22 seq13335 113 7e-20 >seq1043 Length=1979 Score = 203 bits (224), Expect = 5e-47 Identities = 412/597 (69%), Gaps = 20/597 (3%) Strand=Plus/Minus Query 124999 TTCCC-ATCAGGTATCATGACATTTGGGAAATGTACAAAAAGGCTCAGGCCTCCTTTTGG 125057 ||||| |||| | | | ||||||||| | |||||||| ||||| |||| || || ||| Sbjct 790 TTCCCTATCAAGCACCCGGACATTTGGAACATGTACAAGAAGGCAGAGGCATCTTTCTGG 731 Query 125058 ACGGTCGAAGAGGTCGATCTGTCCAAGGACCTGTACGATTGGGAGACTCGTTTGACTGAA 125117 || | ||||||| |||||||| | | ||| | |||||||||||| ||| || Sbjct 730 ACAGCCGAAGAGATCGATCTGGCAAGCGACATTCACGATTGGGAGAACAAGCTGAACGAT 671 Query 125118 ACTGAGCGAGAGTTTATATCGCACATTTTGGCCTTCTTTGCCGGCTCCGATGGAATCGTC 125177 | ||||| | ||||| | ||| | ||||||||||||||| || || || || ||| Sbjct 670 AACGAGCGTCACTTTATCACTCACGTACTGGCCTTCTTTGCCGCATCGGACGGCATTGTC 611 Query 125178 AACGACAATCTGTTGACACGATTC-TCTCAAGAGTTGACCATTCCAGAGGTGTCGTGCTT 125236 ||||| ||||| ||||| ||| | || ||| || || ||||||| || || Sbjct 610 AACGAGAATCTTGCCACACGCTTCATGTCT-GAGGTGCAGATCCCAGAGGCACGTTGTTT 552 Query 125237 TTACGGATTCCAAATCATGATTGAGAACGTGCACTCGGAAATGTACTCTACACTGATTGA 125296 || |||||||||||| || |||||| | ||||| || | ||| | || || || Sbjct 551 CTATGGATTCCAAATCGCCATCGAGAACATCCACTCTGAGACCTACAGTCTTCTCATCGA 492 Query 125297 CATGTACATTCGCGA--TCCGCAACGTAAACACATGCTCTTTAACGCAATCGACACGGT- 125353 || |||| || || ||| | | || |||||||||| |||| ||||| || | Sbjct 491 CACCTACA-TCAAGAACACCGAGAAG-AAGAACATGCTCTTCCACGCCATCGAGACTATC 434 Query 125354 GCCGTCTATACGTAAAAAGGCTCAATGGGTGATTCGGTGGATCGATGACGACAAGTCT-- 125411 ||| | || | || || || | |||| | || |||||| || ||| || Sbjct 433 CCCGCCGTTAAG-AAGAAAGCCGACTGGGCCTTGCGCTGGATC----AC--CAACGCTCG 381 Query 125412 -TCGTACGCCGACAGACTGGTGGCATTCGCCGCCGTAGAGGGCATCTTCTTTTCGGGTAG 125470 || | |||||| | |||| || || ||||| || ||||| ||||||||| || || Sbjct 380 CTCATTCGCCGAGCGTTTGGTCGCCTTTGCCGCTGTCGAGGGTATCTTCTTTAGTGGCAG 321 Query 125471 TTT-TGCGGCCATCTTTTGGCTCAAGAAGCGCGGACTCATGCCCGGACTGACGCACAGTA 125529 ||| ||| | ||||||||||||||||||||||| | |||| ||| || || | | Sbjct 320 TTTCTGC-TCGATCTTTTGGCTCAAGAAGCGCGGTTTAATGCACGGCTTGTCGTTCTCGA 262 Query 125530 ACGAGTTTATATCTCGAGACGAGGGCCTACACTGTGACTTTGCCATTCTACTGTTTC 125586 ||||| | || ||| |||||||| | ||||| ||||||||| | | |||| || Sbjct 261 ACGAGCTGATCAGTCGTGACGAGGGTTTGCACTGCGACTTTGCCTGTTTGCTGTATC 205 >seq6392 Length=4631 Score = 145 bits (160), Expect = 1e-29 Identities = 188/254 (74%), Gaps = 12/254 (5%) Strand=Plus/Minus Query 97977 ATCATGTACAACAATGGGTCCATTCAAAACATTACCATCATCCCGGAAGAGTTGCGCAGA 98036 ||||| |||| ||| || | || || || |||| ||| || || || ||||| Sbjct 4243 ATCATTGCCAACCGTGGTTCGGTCCAGAAAATCACCAACATTCCCGAGGAATTGCGTGAC 4184 Query 98037 ATCTACAAGACTGTCTGGGAGATTC-CGACCAAGACGCTGATCGATATGGCTGCCGACAG 98095 |||||||||||||||||||||||| | | | | ||||||||| ||||| |||||| | Sbjct 4183 CTCTACAAGACTGTCTGGGAGATTCGCCAGCGTGT-GCTGATCGACATGGCAGCCGACCG 4125 Query 98096 AGGTGTCTACATTGACCAGAGTCAATCGTTCAA--TCTGTACGTTGCCGAGCCCACCTA- 98152 |||| || ||||||||||||||| ||||| ||| || | |||||||||| || Sbjct 4124 TGGTGCCTTCATTGACCAGAGTCAGAGTTTCAACGTCTTTA--TCGCCGAGCCCAACTTT 4067 Query 98153 --CAGTCGTATGACTTCGATACACTTTTACGCATGGAACAAGGGCCTCAAGACGGGCATG 98210 || | | ||||| || || || || |||||||| ||||| || ||||| |||||| Sbjct 4066 GCCAAGC---TCACTTCAATGCATTTCTATGCATGGAAGAAGGGTCTGAAGACCGGCATG 4010 Query 98211 TACTATCTGAGAAC 98224 |||||| ||||||| Sbjct 4009 TACTATTTGAGAAC 3996 >seq3533 Length=1137 Score = 120 bits (132), Expect = 4e-22 Identities = 368/562 (65%), Gaps = 13/562 (2%) Strand=Plus/Plus Query 125016 GACATTTGGGAAATGTACAAAAAGGCTCAGGCCTCCTTTTGGACGGTCGAAGAGGTCGAT 125075 ||||| ||||| |||||||| || || | || || || ||||| | || || | || Sbjct 398 GACATATGGGATATGTACAAGAAAGCAGAAGCTTCATTCTGGACAGCAGAGGAATTAGAC 457 Query 125076 CTGTCCAAGGACCTGTACGATTGGGAGACTCGTTTGACTGAAACTGAGCGAGAGTTTATA 125135 || | || || |||||||||||| | | ||| | || ||| | ||||| Sbjct 458 TTGGCTTCTGATATGAACGATTGGGAGAACAAGCTCAATGACAACGAACGACACTTTATC 517 Query 125136 TCGCACATTTTGGCCTTCTTTGCCGGCTCCGATGGAATCGTCAACGACAATCTGTTGACA 125195 | | | |||| |||||||||| || || || |||||||| || ||||| || Sbjct 518 ACCAATGTGCTGGCATTCTTTGCCGCATCAGACGGTATCGTCAATGAGAATCTCGCCACT 577 Query 125196 CGATTC-TCTCAAGAGTTGACCATTCCAGAGGTGTCGTGCTTTTACGGATTCCAAATCAT 125254 |||||| | || ||| | || ||||||| ||||| || || || || ||| Sbjct 578 CGATTCATGTC-TGAGGTACAAATACCAGAGGCCCGCTGCTTCTATGGCTTTCAGATCGC 636 Query 125255 GATTGAGAACGTGCACTCGGAAATGTACTCTACACTGATTGACATGTACATT-CGCGATC 125313 |||||||||| | ||| | || | ||| | |||| |||| ||| || | Sbjct 637 GATTGAGAACATTCACGCAGAGACCTACAGTCTTTTGATCGACACATACGTTAAAAGTAG 696 Query 125314 CGCAACGTAAACACATGCTCTTTAACGCAATCGACACGGTGCCGTCTATACGTAAAAAGG 125373 | ||| | ||||| ||| || ||||| || || ||| | || | || || |||| Sbjct 697 CACAAAG-AAACAGGAGCTTTTCAACGCGATAGAGACGATCCCCGCCGTAAAGAAGAAGG 755 Query 125374 CTCAATGGGTGATTCGGTGGATCGATGACGACAAGTC---TTCGTACGCCGACAGACTGG 125430 | | |||| | | || |||||| || ||| || ||| | |||||| | ||| Sbjct 756 CAGAGTGGGCGCTGCGCTGGATC----AC--CAACTCTTGTTCATTCGCCGAACGTTTGG 809 Query 125431 TGGCATTCGCCGCCGTAGAGGGCATCTTCTTTTCGGGTAGTTTTGCGGCCATCTTTTGGC 125490 ||||||| || || || ||||| |||||||| || || ||| ||||||| ||| Sbjct 810 TGGCATTTGCTGCGGTTGAGGGTATCTTCTTCAGCGGCAGCTTTTGTGCCATCTACTGGT 869 Query 125491 TCAAGAAGCGCGGACTCATGCCCGGACTGACGCACAGTAACGAGTTTATATCTCGAGACG 125550 | ||||| | || | ||||| || || || |||||| | || ||| |||| Sbjct 870 TGAAGAAAAGGGGTTTAATGCCAGGCCTTACCTTTTCCAACGAGCTGATCAGTCGTGACG 929 Query 125551 AGGGCCTACACTGTGACTTTGC 125572 |||| |||||||| |||||||| Sbjct 930 AGGGTCTACACTGCGACTTTGC 951 >seq13335 Length=4250 Score = 113 bits (124), Expect = 7e-20 Identities = 163/226 (72%), Gaps = 8/226 (4%) Strand=Plus/Minus Query 98040 TACAAGACTGTCTGGGAGATTCCGACCAAG-ACGCTGATCGATATGGCTGCCGACAGAGG 98098 |||||||| || |||||||| ||| | | || |||||||||||||| |||||| | || Sbjct 1299 TACAAGACCGTGTGGGAGAT-CCGTCAGCGCACACTGATCGATATGGCGGCCGACCGTGG 1241 Query 98099 TGTCTACATTGACCAGAGTCAATCGTTCAATCTGTACGTTGCCGAGCCCACCTA---CAG 98155 || | ||| ||||| ||||| ||||| ||| | |||||||| | || || Sbjct 1240 TGCTTTCATCGACCAAAGTCAGAGCTTCAACGTGTTTATCGCCGAGCCAAGCTTTGCCAA 1181 Query 98156 TCGTATGACTTCGATACACTTTTACGCATGGAACAAGGGCCTCAAGACGGGCATGTACTA 98215 | | || ||||| |||||||| || ||||| ||||| || ||||| ||||||||||| Sbjct 1180 GC---TCACCTCGATGCACTTTTATGCCTGGAAGAAGGGACTGAAGACTGGCATGTACTA 1124 Query 98216 TCTGAGAACAAAGTCGGCCACCAATGCCATACCATTTACGGTGGAC 98261 ||| | || | | ||| || | ||||| | || || |||||| Sbjct 1123 CCTGCGTACCAGAGCCGCCGCCGACGCCATCCAGTTCACCGTGGAC 1078 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 740797726524520