Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acytostelium_20leptosomum_20[genbank_20GCA_5F900092245.1_202017-01- 02] 28,227 sequences; 57,256,845 total letters Query= NC_004313.1 Length=40149 Score E Sequences producing significant alignments: (Bits) Value seq4 190 5e-44 seq4332 165 2e-36 seq1687 158 3e-34 seq373 111 4e-20 seq40 93.3 1e-14 >seq4 Length=38681 Score = 190 bits (210), Expect = 5e-44 Identities = 396/587 (67%), Gaps = 16/587 (3%) Strand=Plus/Minus Query 37390 CCAATTTCAGCAGGCGGCTGGTATTAGCGCCGGGCTTTCTGCGCGCTGGTATCCGCATAT 37449 |||||| | | || || ||||| || | | ||| | |||||||||||| |||||| Sbjct 5546 CCAATTCCGCCGCGCCGCCGGTATCAGTGAGGTGCTGGCCACGCGCTGGTATCTGCATAT 5487 Query 37450 TACGGCGGCAATGAGCGAATTCGGTATTACTGCACCACTGGATCAGGCCATGTTCATTGC 37509 || |||||||||| || || || || ||| ||| | ||||| ||||| || || Sbjct 5486 CACCGCGGCAATGAAAGAGTTTGGCATCGAACAACCGCTGCACCAGGCGATGTTTATCGC 5427 Query 37510 ACAAGTTGGGCATGAATCTGCTGGTTTTACCTCGCTGGTCGAGAGCTTCAACTACTCGGT 37569 || || |||||||| ||| | || |||||| |||| || | |||||||||| || Sbjct 5426 GCAGGTCGGGCATGAGTCTACCGGCTTTACCCGGCTGCAGGAAAACTTCAACTACAGCGT 5367 Query 37570 AGATGGGCTGATGAAAACCTTTGGTAAA---CGCCTGACGCCGTATCAGTGTGAAATGCT 37626 || |||||| | | ||| ||||| || | | |||| | | ||| Sbjct 5366 AGCAGGGCTGGCAGGTTTCGTCCGTACCGGGCGCCTAACTCAGGGTCAGGCTAACGCGCT 5307 Query 37627 GGGGCGTGTCGATGGT-AAGCA--------GGTGGCCCACCAGCCGCAAATAGCCAATCT 37677 ||| ||| | |||| || || | ||| | ||||| || ||||| || Sbjct 5306 GGGCCGTCGTGCTGGTGAACCATCGTTACCGCTGGAGCGCCAGCGTGCGATCGCCAACCT 5247 Query 37678 AGTTTACGGTGGCCGCATGGGTAACAAAGACGCCGGA--GATGGCTGGAAGTATCGCGGG 37735 || ||| | | ||||| ||||| | | | || || |||||| || | |||| Sbjct 5246 GGTGTACAGCAAAAGAATGGGGAACAACG--GTCCGACTGACGGCTGGTTTTACCTCGGG 5189 Query 37736 CGTGGGCTTATCCAGATTACCGGGCTGGAGAATTACACCAGATGCGGCGTTGCCCTGAAA 37795 || |||||||||||||| ||||||||| | || || | |||||| || |||||| Sbjct 5188 CGCGGGCTTATCCAGATCACCGGGCTGAACAACTATCGCGACTGCGGCAATGGCCTGAAG 5129 Query 37796 CTGGATCTGGTGGCGAATCCGGGACAGCTTGAACTGGATCGTCATGCCGCCCGTTCCGCA 37855 |||||||||| | | || | | ||| | | ||| | || ||||| ||| Sbjct 5128 GTGGATCTGGTTAAGCAGCCTGAGCTGCTGGCGCAGGACGAATACGCGGCCCGCAGCGCG 5069 Query 37856 GCGTGGTTTTTTGTGACTAGAGGGTGTCTGAAATACTCCGGCGACCTGGTGCGCGTTACG 37915 |||||||| || | || | ||| || |||| ||| ||||||||||||||||||| ||| Sbjct 5068 GCGTGGTTCTTCGCAACCAAAGGCTGCATGAAGTACACCGGCGACCTGGTGCGCGTCACG 5009 Query 37916 CAGATCATTAACGGAGGGCAGAACGGCATCGGTGACAGGCGAGAGCG 37962 |||||||| || || |||||||||||||||| ||| |||| | ||| Sbjct 5008 CAGATCATCAATGGTGGGCAGAACGGCATCGACGACCGGCGTGCGCG 4962 >seq4332 Length=4020 Score = 165 bits (182), Expect = 2e-36 Identities = 281/403 (70%), Gaps = 6/403 (1%) Strand=Plus/Minus Query 8778 TGCGTATTCAGCGGGATATCACGACGTACAGGAAAAATGCGTATGGTGTGGCGGATAACA 8837 |||| |||||||||| ||||| || ||| ||| || |||| || |||||| || Sbjct 3605 TGCGCATTCAGCGGGCCATCACCACTTACCAGAAGAACGCGTTCGGCCAGGCGGACAATT 3546 Query 8838 GCTACCTTGACAGCGAGACGCTGCATACCAGT--GCTTATGTGTTGCGCCGTCTGAAATC 8895 ||| || |||||||| || ||||| ||||| || | | | ||||||| ||| | Sbjct 3545 CCTATCTGGACAGCGAAACCCTGCA--CCAGTCGGCCTTTATCGTGCGCCGCCTGCAGAG 3488 Query 8896 TGTTATTACCAGTAAATACGGGCGCCATAAACTTGCTAATGATGGTACGCGTTTCGGGTC 8955 || || ||||| || ||||||||||| ||||| ||| ||| || ||||| || || | Sbjct 3487 CGTGATCACCAGCAAGTACGGGCGCCACAAACTCGCTGCTGACGGCACGCGCTTTGGCGC 3428 Query 8956 TGGTCAGGCCATTGTCACGCCTGCCGTTATCCGTGGTGAGCTGGGATCAACATATCGCCA 9015 || ||| | || ||||| || | ||||| ||||||||| | || ||||| Sbjct 3427 CGGCCAGCCGATCGTCACCCCGAGCACCATCCGCGGTGAGCTGATTGCCCAGTA-CGCCA 3369 Query 9016 -GATGGAGCGGGAAGGCATCGTGGAAAACTTCGATCTGTTCCAGCAACATCTGATAGTGG 9074 | | || | ||||||| ||||| ||| ||| |||||| | || ||||| || | Sbjct 3368 AGCTCGAACTGGAAGGCCATGTGGAGAACGCCGAGCTGTTCGCCGAGCACCTGATCGTCG 3309 Query 9075 AGCGTAACGCGAACGATTCGAACCGCCTGGATGTGCTGTTTCCGCCTGATTATGTCAATC 9134 |||| || | || ||| ||| | | |||||||| ||||| ||||| ||||| Sbjct 3308 AGCGCGACAGCCAGGACCCGAGCCGGGTCAACGTGCTGTTCCCGCCGGATTACGTCAACG 3249 Query 9135 AGTTACGTGTGTTTGCAGTGCTTAACCAGTTCCGTCTGCAGTA 9177 | | || ||||| || |||| |||||||||||| ||||||| Sbjct 3248 GGCTGCGGGTGTTCGCGCTGCTCAACCAGTTCCGTTTGCAGTA 3206 >seq1687 Length=800 Score = 158 bits (174), Expect = 3e-34 Identities = 178/237 (75%), Gaps = 6/237 (3%) Strand=Plus/Plus Query 38077 CATTACCGCGACAACGCCATTCAGTATAAATCGCAGCGTGATACC---GCCAGTCATAGT 38133 |||||||| || ||||||||| || ||| | ||||| || | ||||| | Sbjct 544 CATTACCGTGATAACGCCATTACCTACAAAGCCCAGCGCGACAAAAATGCCAGAGAA--- 600 Query 38134 CTGACGCTGGCGAACGAGACTATCAGCGATATGGAGGTGCGCCAGCGTGACGTTGCCGCC 38193 |||| ||||||||||| | | || | || ||| || ||||||||||||| ||||| || Sbjct 601 CTGAAGCTGGCGAACGCGGCAATTACTGACATGCAGATGCGCCAGCGTGATGTTGCTGCA 660 Query 38194 CTTGATGCAAGATATACAAAGGAGCTCGCTGATGCGAAAGCTGAGAATGATGCTTTGCGC 38253 || |||| || ||| || |||||| | ||| ||||||||||||| ||||||||| |||| Sbjct 661 CTGGATGAAAAATACACGAAGGAGTTAGCTAATGCGAAAGCTGAAAATGATGCTCTGCGT 720 Query 38254 GATGATGTCGCCGCTGGCCGTCGTCGCCTGCTCGTCAACGCCACCTGTCCCGCAGTG 38310 |||| ||| |||||||| |||||||| ||| | |||| || ||||| ||||| Sbjct 721 GATGGTGTTGCCGCTGGTCGTCGTCGGTTGCACATCAAAGCAGTCTGTCAGTCAGTG 777 >seq373 Length=63667 Score = 111 bits (122), Expect = 4e-20 Identities = 271/404 (67%), Gaps = 10/404 (2%) Strand=Plus/Plus Query 35240 GGGTTAAATCCCAGCCGTGCGCCTGCTGCGGGAAGCAGGCGGATGATCCGCACCACCTGA 35299 |||||||| |||||||| ||||| ||| ||| || |||||| | || || || | Sbjct 5107 GGGTTAAAAAACAGCCGTGTATGTGCTGTGGGCAGCCTGCAGATGATGCACATCATCTTA 5166 Query 35300 TAGGCCACGGTCAGGGAGGGATGGGAACAAAGGCGCATGACCTCTTTGTGCTGCCGTTGT 35359 | ||| || ||||| || | || || ||||| || || | ||| | | || || | Sbjct 5167 TTGGCTGGGGGCAGGGCGGCGTAGGCACCAAGGCCCACGATATTTTTACGATCCCATTAT 5226 Query 35360 GCAGAACGCATCACAATGAGTTACATGCGGACACCGTGGCATTCGAAGAGAAATACGGCT 35419 || | | ||| ||| || || || ||| | | || || || |||||||| Sbjct 5227 GCCGCAAGCACCACCGTGCTTTGCACCATGACCCTGCCGCTTTTGAGCGTGAATACGGCA 5286 Query 35420 CTCAACTGGAGTTGATATTTCGTTTTATCGATCGCGCACTGGCGATTGGTGTACTGA-GT 35478 | || | || ||||| || || | || || ||| ||| | || || ||| || Sbjct 5287 CCCAGCCGGTATTGATTATTAAATTGCTGGACCGGGCATACGCGCTCGGCGTTCTGGCGT 5346 Query 35479 --TAAGGGGTAAG----GAATGACACCACGTCAACGCCGTCAACATCGTAACGCAATAGA 35532 ||||| | ||| |||||||||||||||||||||||| ||| ||| | | |||| Sbjct 5347 AGTAAGGAG-AAGAACAGAATGACACCACGTCAACGCCGTCTACACCGTGCAGGATTAGA 5405 Query 35533 AAAAGCCGCTGCCGCGCCGCGCAAGAGCTGGCTGGGAAAATTCAGGCCGCTT-ACGTCAG 35591 || | || ||||| |||||||| ||||||||||| ||||| || ||| | | || Sbjct 5406 AACTGTGGCCGCCGCCCCGCGCAAAAGCTGGCTGGGCCGATTCACTCCCCTTAATGGCA- 5464 Query 35592 TCCAGAGTGCGTGGGTTAAATCATTACTGTCTGTCTGGGGGGAA 35635 | ||| || ||| | ||||| | || |||| ||||||||| Sbjct 5465 TTCAGTCCGCCTGGATAAAATCTCTGCTTACTGTTTGGGGGGAA 5508 >seq40 Length=14228 Score = 93.3 bits (102), Expect = 1e-14 Identities = 132/186 (71%), Gaps = 0/186 (0%) Strand=Plus/Plus Query 28149 GTAGTTAGTGTTATCAGATATCACCAATAATTTATCGGGGATCATCTGCAGTCTTTTTAC 28208 |||| | |||||||||| || |||| || ||||| ||||| ||||| | ||||| Sbjct 8546 GTAGCTCTTGTTATCAGAGATAACCAGTAGCTTATCTTTCATCATTTGCAGGCGCTTTAC 8605 Query 28209 GTATATTTTATCATCAAAGCCAAAGACATAGATGCCATCACCATCGAACTGGTTGATGCT 28268 | | | || || | ||| ||||||| |||||||| ||||| || | | Sbjct 8606 ATGGGCTGTGTCGTCGTACAGAAACGCATAGATACCATCACCGTCGAAAGATTTAACCGT 8665 Query 28269 TATATCGACAAAAATAAGATCTCCGGGTTCAATTGTTGGTGCCATGCTGTCACCGCGCAC 28328 ||||| || || | ||||| || ||||| || ||| || |||||||||||||||||| Sbjct 8666 GATATCAACGAACAGCAGATCACCTGGTTCGATCGTTCCTGACATGCTGTCACCGCGCAC 8725 Query 28329 GTTAAT 28334 |||||| Sbjct 8726 GTTAAT 8731 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 128312175898514