Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acytostelium_20leptosomum_20[genbank_20GCA_5F900092245.1_202017-01- 02] 28,227 sequences; 57,256,845 total letters Query= NC_004348.1 Length=40679 Score E Sequences producing significant alignments: (Bits) Value seq373 172 1e-38 seq40 111 4e-20 seq501 93.3 1e-14 seq4 89.7 1e-13 seq62 86.0 2e-12 >seq373 Length=63667 Score = 172 bits (190), Expect = 1e-38 Identities = 237/331 (72%), Gaps = 3/331 (1%) Strand=Plus/Plus Query 21351 AGCACCCCGTTTCTTCGGAGGTGG---TATGGCAAAACGTATGAATGACGACCATAAAAT 21407 ||||||||||| |||||||| ||||||||| | |||| | ||| | | | || Sbjct 8186 AGCACCCCGTTAACCCGGAGGTGAACCTATGGCAAAGCATATGCAAGACAAAGAAAGCAT 8245 Query 21408 TGTAGGCCTGTCCTGGCTAATTCTGCTTGGAATTGCCTGCTGGGGCGGCTTAGTTCGCTA 21467 | || | ||||||| |||||| ||||| | ||||||||| | || || | Sbjct 8246 GGCCGGAATCACCTGGCTGGCTCTGCTGATCATTGCTGGTTGGGGCGGCCTTGTCCGATT 8305 Query 21468 CCTGATTGACGTAAAGCAGAATAAAGCAACATGGAGTTGGATAAACGCTTTCGCACAGAT 21527 |||||| || || |||||| ||||||| |||||| |||||||| ||||| || || || Sbjct 8306 CCTGATGGATGTGAAGCAGGGCAAAGCAAAATGGAGCTGGATAAATGCTTTTGCGCAAAT 8365 Query 21528 CGCGGTATCTGGCTTTACCGGTCTGATTGGCGGGTTGATAAGCGTTGAGGGTGGGCTTAG 21587 | ||| || | |||||||| | ||||| ||| | || ||| |||| |||| || || Sbjct 8366 TGTGGTTTCGGCTTTTACCGGGGTCATTGGTGGGCTCATCAGCATTGAAAGTGGCCTGAG 8425 Query 21588 TTTTCACATGATCCTGGTAACGTCGGGAATTAGCGGGGCAATGGGTTCCGTTGCTCTAAC 21647 | || ||||||| |||| || | || |||| || || ||||||||||| || || || Sbjct 8426 TATTTACATGATACTGGCCACTGCCGGTGTTAGTGGTGCTATGGGTTCCGTAGCGCTTAC 8485 Query 21648 CTACTTCTGGGAGCGTCTTACAGGGATGAAA 21678 || |||||||| || | || || |||||| Sbjct 8486 ATATTTCTGGGAACGAATCACCGGAATGAAA 8516 >seq40 Length=14228 Score = 111 bits (122), Expect = 4e-20 Identities = 63/64 (98%), Gaps = 0/64 (0%) Strand=Plus/Plus Query 5137 CAATAAAAAACCGCCATCAGGCGGCTTGGTGTTCTTTCAGTTCTTCAATTCGAATATTGG 5196 ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 2857 CAAGAAAAAACCGCCATCAGGCGGCTTGGTGTTCTTTCAGTTCTTCAATTCGAATATTGG 2916 Query 5197 TTAC 5200 |||| Sbjct 2917 TTAC 2920 >seq501 Length=12468 Score = 93.3 bits (102), Expect = 1e-14 Identities = 97/128 (76%), Gaps = 11/128 (9%) Strand=Plus/Minus Query 3125 CTTATTTTTACT-GTGGGACATATTTGGGACAG----------AAGTACCAAAAATCGAG 3173 || |||||| || ||||||||||||||||||| || | ||||||| ||| Sbjct 10997 CTGATTTTTCCTTGTGGGACATATTTGGGACATCTTCTGCAAAAATTTGCAAAAATTGAG 10938 Query 3174 TCAATTTGTCGAGCATGTTCAGTCAGGTGATTTGGTGCCAGATGAGCATATCTGCGAACC 3233 |||||||| || || || ||||| | || || |||||||| |||||||||| || ||| Sbjct 10937 TCAATTTGACGTGCGTGCTCAGTTAAATGGTTAGGTGCCAGGTGAGCATATCGACGGACC 10878 Query 3234 ATTTCGAT 3241 |||||||| Sbjct 10877 ATTTCGAT 10870 >seq4 Length=38681 Score = 89.7 bits (98), Expect = 1e-13 Identities = 59/64 (92%), Gaps = 1/64 (2%) Strand=Plus/Plus Query 7959 TCTTTGGTTTCCAGCTCATCCAGCAGCGCCAGCATGGTGGCGGGGTTGGCTTGCGGCGAT 8018 ||||||| |||||||||||||||||||||||||| ||||||||| ||||| ||||||||| Sbjct 33540 TCTTTGGCTTCCAGCTCATCCAGCAGCGCCAGCACGGTGGCGGGTTTGGC-TGCGGCGAT 33598 Query 8019 AAAT 8022 | || Sbjct 33599 ATAT 33602 >seq62 Length=1393 Score = 86.0 bits (94), Expect = 2e-12 Identities = 50/52 (96%), Gaps = 0/52 (0%) Strand=Plus/Plus Query 3044 ATTCGTAATGCGAAGGTCGTAGGTTCGACTCCTATTATCGGCACCAGTTAAA 3095 |||||||||||||||||||||||||||||||||||||||||||||| || || Sbjct 25 ATTCGTAATGCGAAGGTCGTAGGTTCGACTCCTATTATCGGCACCATTTCAA 76 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 130007607406734