Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acytostelium_20leptosomum_20[genbank_20GCA_5F900092245.1_202017-01- 02] 28,227 sequences; 57,256,845 total letters Query= NC_004629.1 Length=280334 Score E Sequences producing significant alignments: (Bits) Value seq24971 107 3e-18 seq12 107 3e-18 seq5395 105 1e-17 seq501 104 4e-17 seq85 89.7 9e-13 seq345 87.8 3e-12 >seq24971 Length=330 Score = 107 bits (118), Expect = 3e-18 Identities = 67/72 (93%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 272871 ATGGTGGGCCCAGCAGGACTTGAACCTGCGACCAAGCGATTATGAGTCGCCTGCTCTAAC 272930 ||||||||||||| |||||| |||||| |||||||| ||||||||||| ||||||||||| Sbjct 72 ATGGTGGGCCCAGTAGGACTCGAACCTACGACCAAGGGATTATGAGTCCCCTGCTCTAAC 13 Query 272931 CAACTGAGCTAT 272942 |||||||||||| Sbjct 12 CAACTGAGCTAT 1 >seq12 Length=339259 Score = 107 bits (118), Expect = 3e-18 Identities = 71/79 (90%), Gaps = 0/79 (0%) Strand=Plus/Plus Query 272870 TATGGTGGGCCCAGCAGGACTTGAACCTGCGACCAAGCGATTATGAGTCGCCTGCTCTAA 272929 ||| ||||||||||| || || ||||| ||||||||| ||||||||||| ||| |||||| Sbjct 93098 TATAGTGGGCCCAGCTGGGCTCGAACCAGCGACCAAGAGATTATGAGTCTCCTACTCTAA 93157 Query 272930 CCAACTGAGCTATAGGCCC 272948 ||||||||||||||||||| Sbjct 93158 CCAACTGAGCTATAGGCCC 93176 >seq5395 Length=3558 Score = 105 bits (116), Expect = 1e-17 Identities = 72/80 (90%), Gaps = 1/80 (1%) Strand=Plus/Plus Query 273268 AAATGGTCGGAGTGGGGAGACTCGAACTCCCGACATCCTGCTCCCAAAGCAGGCGCGCTA 273327 |||||||||| || ||| || ||||||||||||||||||||||||||||||||||||||| Sbjct 2794 AAATGGTCGGGGTAGGGGGATTCGAACTCCCGACATCCTGCTCCCAAAGCAGGCGCGCTA 2853 Query 273328 CC-AACTGCGCTACACTCCG 273346 || ||||||||| || ||| Sbjct 2854 CCGGACTGCGCTATACCCCG 2873 >seq501 Length=12468 Score = 104 bits (114), Expect = 4e-17 Identities = 68/74 (92%), Gaps = 1/74 (1%) Strand=Plus/Minus Query 272868 TATATGGTGGGCCCAGCAGGACTTGAACCTGCGACCAAGCGATTATGAGTCGCCTGCTCT 272927 ||| |||||| ||| || ||||||||||| |||||||||||||||||||||||||||||| Sbjct 4860 TATTTGGTGGCCCCTGCTGGACTTGAACCAGCGACCAAGCGATTATGAGTCGCCTGCTCT 4801 Query 272928 AACCAACTGAGCTA 272941 |||| ||||||||| Sbjct 4800 AACC-ACTGAGCTA 4788 >seq85 Length=367292 Score = 89.7 bits (98), Expect = 9e-13 Identities = 72/86 (84%), Gaps = 1/86 (1%) Strand=Plus/Plus Query 273265 TTAAAATGGTCGGAGTGGGGAGACTCGAACTCCCGACATCCTGCTCCCAAAGCAGGCGCG 273324 || |||||||||||| || |||| ||||||||||||| ||| ||||||| ||| ||| Sbjct 146954 TTGAAATGGTCGGAGCGGAGAGATTCGAACTCCCGACCCTCTGGTCCCAAACCAGATGCG 147013 Query 273325 CTACCA-ACTGCGCTACACTCCGTAT 273349 |||||| ||||||||| |||||||| Sbjct 147014 CTACCAGGCTGCGCTACGCTCCGTAT 147039 >seq345 Length=175672 Score = 87.8 bits (96), Expect = 3e-12 Identities = 66/78 (85%), Gaps = 0/78 (0%) Strand=Plus/Minus Query 272871 ATGGTGGGCCCAGCAGGACTTGAACCTGCGACCAAGCGATTATGAGTCGCCTGCTCTAAC 272930 ||||||||||| | ||||| ||||| | |||||||| ||||||| |||| |||||||| Sbjct 11391 ATGGTGGGCCCGGAGGGACTCGAACCCCCAACCAAGCGGTTATGAGCCGCCGGCTCTAAC 11332 Query 272931 CAACTGAGCTATAGGCCC 272948 ||| ||||||| |||||| Sbjct 11331 CAATTGAGCTACAGGCCC 11314 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 896624325650480