Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acytostelium_20leptosomum_20[genbank_20GCA_5F900092245.1_202017-01- 02] 28,227 sequences; 57,256,845 total letters Query= NC_004681.1 Length=75931 Score E Sequences producing significant alignments: (Bits) Value seq47 190 1e-43 seq177 188 3e-43 seq11306 172 3e-38 seq19644 136 2e-27 >seq47 Length=21181 Score = 190 bits (210), Expect = 1e-43 Identities = 447/666 (67%), Gaps = 19/666 (3%) Strand=Plus/Plus Query 66676 TGTGGACGTCATTCCCACCGGCTCTATCGCTCTGGACGGCGCTCTGGGCATCGGGGGGTA 66735 |||||| ||| |||||||||| | ||||||| ||| |||||| ||| || Sbjct 15583 TGTGGAAACCATCTCCACCGGCTCGCTTTCTCTGGATATCGCGCTGGGCGCCGGCGGTCT 15642 Query 66736 CCCGAGGGGCCGGGTGGTGGAAATCTACGGCCCAGAATCTTCAGGGAAGTCAACTCTGTG 66795 || | |||||| | || || |||||||| || ||||| || || || | || ||| Sbjct 15643 GCCAATGGGCCGTATCGTCGAGATCTACGGTCCGGAATCCTCCGGTAAAACCACCCTGAC 15702 Query 66796 TCTCCACGCGGTGGCCAATGCGCAGAAGGCCGGTGGCAACGCCGCCTACATCGACGCTGA 66855 || || | | ||| |||||| | ||| | | || | |||||| ||||| Sbjct 15703 GCTGCAGGTTATCGCCGCAGCGCAGCGTGAAGGTAAAACCTGTGCGTTCATCGATGCTGA 15762 Query 66856 GCACTCCCTGGACCCCGAGTACGCCAAGGCG--CTCGGTGTGGACCTCGACAACCTCGTG 66913 || | ||||| || | || || | || || || || || |||||||||| || Sbjct 15763 ACATGCGCTGGATCCTGTCTATGC--ACGCAAACTGGGCGTCGATATCGACAACCTGCTG 15820 Query 66914 GTGGT-TCAGCCGGACACTGGCGAGCAGGCCCTGGAGATCGTTGACCTCCTCGTCAAGTC 66972 || | |||||||||||| ||||||||||| ||||||||| |||| || | || Sbjct 15821 -TGTTCTCAGCCGGACACCGGCGAGCAGGCGCTGGAGATCTGTGACGCGCTGGCGCGCTC 15879 Query 66973 TGGCGAGCTGTCCATCGTCGTCGTTGACTCTGTGGCGGCCCTGGTGCCGCGCGCCGAGCT 67032 ||| | | | | ||||||| ||||| || ||||| || |||| || || | Sbjct 15880 TGGTGCGGTTGATGTTATCGTCGTCGACTCCGTCGCGGCGTTGACGCCGAAAGCGGAAAT 15939 Query 67033 CGAAGGCGACATCGGGGACAGTCACGTCGGCCTGCACGCGCGCCTCATGTCGCAGGCCAT 67092 ||||||||| ||||| ||| |||| | ||||| ||||| | ||| ||||| || Sbjct 15940 CGAAGGCGAAATCGGCGACTCTCACATGGGCCTTGCGGCGCGTATGATGAGCCAGGCGAT 15999 Query 67093 GCGCAAGCTCACTGGCACCATCTCCAGCA--CCAACACGCTGACGCTCTGGGTCAACCAG 67150 ||| ||||| | || | | || |||| ||||||||||| | ||| |||||||| Sbjct 16000 GCGTAAGCTGGCGGGTAAC--CTGAAGCAGTCCAACACGCTGCTGATCTTTATCAACCAG 16057 Query 67151 TTGCGCGAGAAGATCGGCAACGTGGGCTACGG---CCCGAATGAGACCACCACGGGCGGA 67207 | || ||| || ||| ||| | ||| |||| || ||||| || || || Sbjct 16058 ATCCGTATGAAAATTGGC---GTGATGTTCGGTAACCCG---GAAACCACTACCGGTGGT 16111 Query 67208 AAGGCTTTGAGGTTCTACGCCTCAGTCCGCATGGATGTCCGTCGCATCGCCACCGAGAAG 67267 || || ||| |||||||||||| || || |||| | || ||||||| | | | ||| Sbjct 16112 AACGCGCTGAAGTTCTACGCCTCTGTGCGTCTGGACATTCGCCGCATCGGCGCGGTGAAA 16171 Query 67268 GAAGGCGATGAGGCTGTCGGCAACCGCACCCGGGTGAAAGTCGTCAAGAACAAGCTGGCC 67327 || ||||| | | ||||||| | ||||| || ||||| || || |||||| | ||| Sbjct 16172 GAGGGCGACAATGTCGTCGGCAGCGAAACCCGCGTCAAAGTGGTGAAAAACAAGATTGCC 16231 Query 67328 CCGCCG 67333 ||||| Sbjct 16232 GCGCCG 16237 >seq177 Length=203703 Score = 188 bits (208), Expect = 3e-43 Identities = 402/598 (67%), Gaps = 7/598 (1%) Strand=Plus/Plus Query 66737 CCGAGGGGCCGGGTGGTGGAAATCTACGGCCCAGAATCTTCAGGGAAGTCAACTCTGTGT 66796 |||| ||||| | || || || ||||| || ||| || || ||| |||| ||| Sbjct 103606 CCGAAAGGCCGCATTGTCGAGATTTACGGGCCGGAAAGCTCGGGTAAGACAACCCTGGCG 103665 Query 66797 CTCCACGCGGTGGCCAATGCGCAGAAGGCCGGTGGCAACGCCGCCTACATCGACGCTGAG 66856 || || || | || | || |||||| || |||| | ||||| | ||||||| || Sbjct 103666 CTGCATACGATTGCGGAAGCCCAGAAGAAGGGCGGCATCTGCGCCTTCGTCGACGCGGAA 103725 Query 66857 CACTCCCTGGACCCCGAGTACGCCAAGGCGCTCGGTGTGGACCTCGACAACCTCGTGGTG 66916 || | |||||||| | || ||| ||| || ||||| || || || || || | Sbjct 103726 CATGCGCTGGACCCGGTCTATGCCCGCAAGCTGGGCGTGGATCTGGAGAATCTGCTGATC 103785 Query 66917 GTTCAGCCGGACACTGGCGAGCAGGCCCTGGAGATCGTTGACCTCCTCGTCAAGTCTGGC 66976 ||||| || || ||||||||||| ||||||||| ||| || || || || Sbjct 103786 TCGCAGCCCGATACGGGCGAGCAGGCGCTGGAGATCACCGACACGCTGGTGCGTTCCGGT 103845 Query 66977 GAGCTGTCCATCGTC--GTCGTTGACTCTGTGGCGGCCCTGGTGCCGCGCGCCGAGCTCG 67034 | | | | || || || || || || || || || || ||||| || || ||| Sbjct 103846 GCGAT--CGATGTTCTGGTGGTCGATTCCGTTGCCGCTTTGACCCCGCGTGCGGAAATCG 103903 Query 67035 AAGGCGACATCGGGGACAGTCACGTCGGCCTGCACGCGCGCCTCATGTCGCAGGCCATGC 67094 ||||||| || || || || | ||||||||| || ||||| ||| ||||| ||| Sbjct 103904 AAGGCGAGATGGGCGATTCTCTCCCCGGCCTGCAGGCCCGCCTGATGAGCCAGGCGCTGC 103963 Query 67095 GCAAGCTCACTGGCACCATCTCCAGCACCAACACGCTGACGCTCTGGGTCAACCAGTTGC 67154 ||||||| || | |||| ||| | ||||| || | | |||||||| | | Sbjct 103964 GCAAGCTGACCGCATCCATTTCCCGTTCCAACTGCATGGTCATTTTCATCAACCAGATCC 104023 Query 67155 GCGAGAAGATCGGCAACGTGGGCTACGGCCCGAATGAGACCACCACGGGCGGAAAGGCTT 67214 || |||||||||| ||| | ||| || ||| ||||| |||||||| || || Sbjct 104024 GCATGAAGATCGGC---GTGATGTTCGGTTCGCCTGAAACCACGACGGGCGGCAATGCGC 104080 Query 67215 TGAGGTTCTACGCCTCAGTCCGCATGGATGTCCGTCGCATCGCCACCGAGAAGGAAGGCG 67274 ||| ||||| || || || || | ||| |||| ||||||| | ||||||| | | Sbjct 104081 TGAAATTCTATGCTTCGGTGCGTCTCGATATCCGCCGCATCGGTGCGCTGAAGGAACGTG 104140 Query 67275 ATGAGGCTGTCGGCAACCGCACCCGGGTGAAAGTCGTCAAGAACAAGCTGGCCCCGCC 67332 | |||| |||||||||| ||||| || || || |||||||||||||| || || || Sbjct 104141 ACGAGGTGGTCGGCAACCAGACCCGCGTCAAGGTGGTCAAGAACAAGCTTGCGCCCCC 104198 >seq11306 Length=553 Score = 172 bits (190), Expect = 3e-38 Identities = 215/294 (73%), Gaps = 3/294 (1%) Strand=Plus/Minus Query 67158 AGAAGATCGGCAACGTGGGCTACGGCCCGAATGAGACCACCACGGGCGGAAAGGCTTTGA 67217 ||||||||||| | | || |||| || ||||| ||| | || || ||||| ||| Sbjct 553 AGAAGATCGGCGTCTT---CTTCGGCTCGCCCGAGACGACCGCCGGTGGTAAGGCGCTGA 497 Query 67218 GGTTCTACGCCTCAGTCCGCATGGATGTCCGTCGCATCGCCACCGAGAAGGAAGGCGATG 67277 |||||||||||| ||||||||||| ||||||| |||| ||| ||||| || | Sbjct 496 AGTTCTACGCCTCGGTCCGCATGGACATCCGTCGTATCGAGACCCTCAAGGACGGAACCG 437 Query 67278 AGGCTGTCGGCAACCGCACCCGGGTGAAAGTCGTCAAGAACAAGCTGGCCCCGCCGCACC 67337 | || ||||| ||||||||| |||| || || |||||||||||| |||| |||||| | Sbjct 436 ACGCCGTCGGAAACCGCACCAGGGTCAAGGTGGTCAAGAACAAGATGGCGCCGCCGTTCA 377 Query 67338 GCAACGCCGAGTTCTCCGTCGTGTACGGGGAGGGCATCTCGCGTGAGGTCGAACTCCTCG 67397 | ||||||||| | || | ||||| | |||||||| ||||||| | || ||| Sbjct 376 AGCAGGCCGAGTTCGACATCCTCTACGGCGTCGGCATCTCCCGTGAGGGCAGCCTGATCG 317 Query 67398 ACCTGGCCGTGTCGCAGGGCCTGGTGAAGAAGTCGGGCGCCTGGTTCAAGTACG 67451 || | | ||| ||| | | | ||||||||||||||| | |||| || |||| Sbjct 316 ACTTCGGCGTCGAGCACGCCATCGTGAAGAAGTCGGGCTCGTGGTACACCTACG 263 >seq19644 Length=1527 Score = 136 bits (150), Expect = 2e-27 Identities = 214/302 (71%), Gaps = 11/302 (4%) Strand=Plus/Minus Query 61142 CTGACCGCCGACCCCGAGCTGCGGTTCACCCAAGGTGGGCAGGCCGTCGCCAACTTCACC 61201 || || ||||||||||||||||| | ||| || |||| | | || || ||||||||| Sbjct 1174 CTCACGGCCGACCCCGAGCTGCGCTACACGCAGAACGGGCTGCCGGTGGCGAACTTCACC 1115 Query 61202 GTCGTGTCCAAC-----GAACGCCG-CCGCGACGCCCAGGGCAACTGGGTCGACGGCGAC 61255 ||| || | |||| || ||| | ||| | | | ||| |||||||| Sbjct 1114 ATCGCATCGACGCCTCGGAACTTCGACCGTGCCGCGAATG---AGTGGAAGGACGGCGAT 1058 Query 61256 GCCACATTCCTCCGCTGCA-CCATCTGGCGCGACGCCGCCGAGAACGTGGCGGAAAGCCT 61314 || |||||||| |||| || |||||||||| ||||||| ||||||||| | Sbjct 1057 GCGCTGTTCCTCCG-TGCATCCGTCTGGCGCGAGTTCGCCGAGCACGTGGCGGGTTCGTT 999 Query 61315 CCAGAAAGGCCAGCGCGTCATCGTGCATGGCTACCTCAAGCAGCGCTCCTTCGAGACCAA 61374 ||| ||| ||||||||||| ||| ||| || |||||||||| | || | Sbjct 998 GACGAAGGGCATGCGCGTCATCGCGCAGGGCCGTCTGCGTCAGCGCTCCTACCAGGACCG 939 Query 61375 GGAGGGCGACAAGCGCACCGTCATCGAGGTGGAGGTAGACGAGATCGGCCCGTCGCTGCG 61434 |||||| || ||||||||| |||||| ||||||| |||||||||||||| ||||| || Sbjct 938 CGAGGGCAACCAGCGCACCGCGATCGAGCTGGAGGTCGACGAGATCGGCCCCTCGCTCCG 879 Query 61435 GT 61436 || Sbjct 878 GT 877 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 242770854064124