Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acytostelium_20leptosomum_20[genbank_20GCA_5F900092245.1_202017-01- 02] 28,227 sequences; 57,256,845 total letters Query= NC_004688.1 Length=110865 Score E Sequences producing significant alignments: (Bits) Value seq23193 104 2e-17 seq172 102 6e-17 seq717 91.5 1e-13 >seq23193 Length=648 Score = 104 bits (114), Expect = 2e-17 Identities = 184/263 (70%), Gaps = 13/263 (5%) Strand=Plus/Minus Query 99301 CCCATGAGTTGCTCGGCTCCGCCCTCGTCCAGGATCACCCGGCTATCGGTGAGG---GAC 99357 |||| ||||||||||| ||||||| ||| | ||| |||| |||| | | ||| Sbjct 629 CCCAGCAGTTGCTCGGCGCCGCCCTGGTCGATGATGGTCCGGGAATCGATCTTGCTCGAC 570 Query 99358 GCTGTGGCGAACGACAGCCGCGAGGGCACGTTGCTCTTGATGAGGCCCGTCACCACATCC 99417 | ||| |||| || || | || | |||| |||||| ||||| || | ||| ||| Sbjct 569 ACC-TGG--AACGCCATGCGGGTCGGGATGTTGGCCTTGATCAGGCCGGTGATCACGTCC 513 Query 99418 ACGGAGGGCCGCTGCGTCGCCAGGACGAGATGAATGCCGGCCGCACGCGCCTTCTGCGCG 99477 || || || ||||| ||||| |||| | || || ||||| || ||||||||||| ||| Sbjct 512 ACCGACGGACGCTGGGTCGCGAGGATCAAGTGGATCCCGGCGGCCCGCGCCTTCTGGGCG 453 Query 99478 ATGCGGACAAT--GTTGGCCTCAACCTCTTTCTTGTAGCCACCCATCATGAGATCAGCGA 99535 || ||| | || ||| | || ||| |||||| | | |||||| | || || | Sbjct 452 ATACGGGCGATCAGTT--CTTCGACC---TTCTTGCCGACGATCATCATCATGTCGGCAA 398 Query 99536 GTTCATCCACCACTACCACGATG 99558 ||| || ||||| ||||||||| Sbjct 397 ATTCGTCGACCACCACCACGATG 375 >seq172 Length=279309 Score = 102 bits (112), Expect = 6e-17 Identities = 225/331 (68%), Gaps = 10/331 (3%) Strand=Plus/Plus Query 99582 GTGGCGCACGCCAGCCTCCTGCATCTGCCGGTATCGGTCGTCCATCTCT---ACGGTGAG 99638 || ||||||||| ||| ||||| ||||| ||||| |||||||| ||||| Sbjct 83261 GTTGCGCACGCCGACCTTGGACATCTTGCGGTAGCGGTCTTCCATCTCCTTGACGGT--- 83317 Query 99639 CCACCGCAGCGTTTTCACCGCCTCGTCAGCCTCTGTAACCACGGGCTGGAGAAGGTGGGG 99698 ||| ||||| | || |||| | | || || || |||||| ||| || || || Sbjct 83318 CCATTTCAGCGCTACGACGGCCTTCTTCGGATCGGTCACGACGGGCGTGAGCAGATGCGG 83377 Query 99699 GATACCGTTGTACGGGGTGAGCTCGACACAT-TTGGGGTCGATCATGATGAGTTTGACCC 99757 || |||| || | || || | ||| || || ||||||||||| || | | Sbjct 83378 AATGCCGTCATAGATCGACAGTTCCAG-CATCTTCGGATCGATCATGATCAGGCGGCACT 83436 Query 99758 GATCAGGGGTCGCCCGGTAGAGCAGCGAAACCAGCATTGAGTTGATGAAGCTGGACTTGC 99817 | || |||||| ||||| |||||||| | | ||| | ||||||| ||| || | Sbjct 83437 GTTCCGGGGTCATGCGGTAAAGCAGCGACAGGATCATGGTGTTGATGGCAACGGATTTAC 83496 Query 99818 CCGATCCGGTCGCGCCAGCCACCAGCAGATGCGGCATCTTAGCCAGGTTCAGGGA-GATG 99876 |||| ||||| | || || |||||||||||||||||||| |||| | || | || || Sbjct 83497 CCGAGCCGGTGGTACCTGCAACCAGCAGATGCGGCATCTTCGCCA-GATCGGCGATGACC 83555 Query 99877 TCCTTGCCCTCGACGTCCTTGCCCACTGCCA 99907 ||| ||| | || | |||||||| |||| Sbjct 83556 GCCTCGCCATTGATGGTCTTGCCCAGCGCCA 83586 >seq717 Length=37078 Score = 91.5 bits (100), Expect = 1e-13 Identities = 202/294 (69%), Gaps = 13/294 (4%) Strand=Plus/Plus Query 99585 GCGCACGCC-AGCCTCCTG-CATCTGCCGGTATCGGTCGTCCATCTC---TACGGTGAGC 99639 ||||||||| ||| | || ||||| |||||| ||||| ||||| || ||| | | Sbjct 15322 GCGCACGCCCAGCTT--TGACATCTTCCGGTAACGGTCTTCCATTTCGCGTACCGC---C 15376 Query 99640 CACCGCAGCGTTTTCACCGCCTCGTCAGCCTCTGTAACCACGGGCTGGAGAAGGTGGGGG 99699 ||| ||||| | ||||||| | | || || || || || || ||||| || Sbjct 15377 CACTTCAGCGCCATGACCGCCTTTTTCGGGTCGGTCACAACAGGGGTAAGCAGGTGCGGA 15436 Query 99700 ATACCGTTGTACGGGGTGAGCTCGACACATTTGGGGTCGATCATGATGAGTTTGACCCGA 99759 ||||||| || | || || | ||||||||||| |||||| || | | Sbjct 15437 ATACCGTCATAGATCGACAGTTCTAGCATTTTGGGGTCGACCATGATCAGGCGGCACTCT 15496 Query 99760 TCAGGGGTCGCCCGGTAGAGCAGCGAAACCAGCATTGAGTTGAT-GAAGCTGGACTTGCC 99818 || || ||| |||||| ||||| || | | ||| | |||||| | | | |||||||| Sbjct 15497 TCCGGCGTCAGCCGGTAAAGCAGTGACAGGATCATGGTGTTGATCGCAAC-CGACTTGCC 15555 Query 99819 CGATCCGGTCGCGCCAGCCACCAGCAGATGCGGCATCTTAGCCAGGTTCAGGGA 99872 ||| || || | || || |||||||||||||||||||| || | |||||| || Sbjct 15556 CGAACCCGTTGTACCGGCAACCAGCAGATGCGGCATCTTGGCGA-GTTCAGCGA 15608 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 354521196865422