Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acytostelium_20leptosomum_20[genbank_20GCA_5F900092245.1_202017-01- 02] 28,227 sequences; 57,256,845 total letters Query= NC_004690.1 Length=113220 Score E Sequences producing significant alignments: (Bits) Value seq8653 105 5e-18 seq3382 102 6e-17 seq3381 91.5 1e-13 seq1351 89.7 4e-13 >seq8653 Length=1535 Score = 105 bits (116), Expect = 5e-18 Identities = 151/210 (72%), Gaps = 2/210 (1%) Strand=Plus/Plus Query 15155 ACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCTTCT 15214 || || || ||||| || || || || |||||||| |||| ||| | | ||||||| Sbjct 212 ACCAAGTGGAGGGTAGACTCCTTCTGAATGTTGTAGTCGCCGAGAGTGCGACCGTCTTCA 271 Query 15215 AATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACAA 15274 | ||| ||||| || | |||||||||||||| ||| ||| || ||||||||||| | Sbjct 272 AGTTGCTTGCCGGCAAAGATCAAACGTTGTTGATCGGGTGGGATACCTTCTTTGTCTTGA 331 Query 15275 AT-TTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTT 15333 || ||||| ||| || | || || || || || || |||| || ||||| || Sbjct 332 ATCTTTGC-CTTGACGTTCTCGATAGTGTCAGAGCCCTCGACCTCTAGTGTGATGGTCTT 390 Query 15334 ACCTGTCAGAGTTTTTACAAAAATTTGCAT 15363 || |||| || |||||||| |||||||| Sbjct 391 TCCAGTCAATGTCTTTACAAAGATTTGCAT 420 >seq3382 Length=4522 Score = 102 bits (112), Expect = 6e-17 Identities = 152/216 (70%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 15155 ACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCTTCT 15214 || || ||||||||||| || ||||| |||||||| || || | | |||| || Sbjct 4161 ACCAAGTGAAGGGTGGACTCCTTTTGGATGTTGTAGTCAGAGAGGGTACGACCGTCCTCC 4102 Query 15215 AATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACAA 15274 || || || || || | || | ||| || |||||| ||| ||||| || ||||| Sbjct 4101 AACTGCTTTCCGGCAAAGATGAGACGCTGCTGGTCGGGTGGGATTCCCTCCTTGTCTTGG 4042 Query 15275 ATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTTA 15334 || ||| ||| || | || ||||||||| | || || || | ||| ||||| || Sbjct 4041 ATCTTGGCCTTGACGTTCTCGATGGTATCGGAACCCTCAACCTCAAGGGTGATGGTCTTT 3982 Query 15335 CCTGTCAGAGTTTTTACAAAAATTTGCATATTTGAA 15370 || |||||||| || || ||||||||||| ||||| Sbjct 3981 CCGGTCAGAGTCTTGACGAAAATTTGCATGATTGAA 3946 >seq3381 Length=12314 Score = 91.5 bits (100), Expect = 1e-13 Identities = 157/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 15137 CCACCTCTCAATCTTAAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTT 15196 ||||| | | ||| | || || ||||||||||| ||||| || |||||||| || | Sbjct 1185 CCACCACGGAGTCTAAGGACCAAGTGAAGGGTGGACTCTTTCTGGATGTTGTAGTCACCG 1126 Query 15197 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGA 15256 || | | | ||||| ||||| || ||||| | || | ||| || |||||| |||| Sbjct 1125 AGGGTACGACCATCTTCCAATTGCTTTCCAGCAAAAATGAGACGCTGCTGGTCGGGTGGA 1066 Query 15257 ATTCCTTCTTTGTCACAAATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACA 15316 || ||||| ||||| ||| || ||| ||| | || ||||| || || || Sbjct 1065 ATACCTTCCTTGTCTTGAATCTTAGCCTTGACATTCTCAATGGTGTCCGAGCCCTCAACC 1006 Query 15317 TCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCATA 15364 || | || || || || || || ||||| || ||||| || |||||| Sbjct 1005 TCAAGAGTGATCGTCTTGCCAGTGAGAGTCTTGACAAAGATCTGCATA 958 >seq1351 Length=12664 Score = 89.7 bits (98), Expect = 4e-13 Identities = 146/211 (69%), Gaps = 0/211 (0%) Strand=Plus/Minus Query 15154 AACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCTTC 15213 ||| || ||||||||||| || ||||| |||||||| || | || | | | || || Sbjct 4685 AACCAAGTGAAGGGTGGACTCCTTTTGAATGTTGTAGTCACCGAGGGTGCGTCCATCCTC 4626 Query 15214 TAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACA 15273 | ||| ||||| || | ||||||||||| |||||| ||| || || || ||||| Sbjct 4625 AAGTTGCTTGCCGGCAAAGATCAAACGTTGCTGGTCGGGTGGGATACCCTCCTTGTCCTG 4566 Query 15274 AATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTT 15333 || ||| ||| || | || ||||| ||| || || || | ||| ||||| || Sbjct 4565 GATCTTGNNCTTGACGTTCTCGATGGTGTCGGATCCCTCGACCTCGAGGGTGATGGTCTT 4506 Query 15334 ACCTGTCAGAGTTTTTACAAAAATTTGCATA 15364 || || || || || || || || |||||| Sbjct 4505 GCCAGTGAGGGTCTTGACGAAGATCTGCATA 4475 Score = 82.4 bits (90), Expect = 6e-11 Identities = 144/210 (69%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 15155 ACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCTTCT 15214 || || ||||||||||| || ||||| |||||||| || | || | | | || || Sbjct 4912 ACCAAGTGAAGGGTGGACTCCTTTTGAATGTTGTAGTCACCGAGGGTGCGTCCATCCTCA 4853 Query 15215 AATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACAA 15274 | || ||||| || | || | ||| || |||||| |||||| || || ||||| Sbjct 4852 AGCTGCTTGCCGGCAAAGATGAGACGCTGCTGGTCGGGTGGAATACCCTCCTTGTCTTGG 4793 Query 15275 ATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTTA 15334 || ||| ||| || | || ||||| ||| || || || | || ||||| || Sbjct 4792 ATCTTGGCCTTGACGTTCTCGATGGTGTCGGATCCCTCGACCTCCAGAGTGATGGTCTTT 4733 Query 15335 CCTGTCAGAGTTTTTACAAAAATTTGCATA 15364 || || ||||| || ||||| ||||||||| Sbjct 4732 CCAGTTAGAGTCTTCACAAAGATTTGCATA 4703 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 362054604356607