Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acytostelium_20leptosomum_20[genbank_20GCA_5F900092245.1_202017-01- 02] 28,227 sequences; 57,256,845 total letters Query= NC_004745.1 Length=30728 Score E Sequences producing significant alignments: (Bits) Value seq8472 89.7 1e-13 seq995 80.6 5e-11 >seq8472 Length=1183 Score = 89.7 bits (98), Expect = 1e-13 Identities = 107/144 (74%), Gaps = 1/144 (1%) Strand=Plus/Minus Query 12378 GAAAAAGGTTTTACT-CAGTTAAGCAGTGCAACAAACAGCACCAGTGAAAAGCTGGCGGC 12436 |||||||| || | ||| | |||||||| || |||||||| || |||||||| Sbjct 194 GAAAAAGGGGATAGTACAGCTCAGCAGTGCGACCAACAGCACTTCCGAGTCACTGGCGGC 135 Query 12437 AACGCCAAAAGCGGTCAAGGCAGCAAATGACAACGCAAATTCACGTCTGGCGAAAAATCA 12496 ||||||||| || || || ||||| ||||||| ||| | ||||||| |||| | || Sbjct 134 AACGCCAAAGGCAGTAAAAGCAGCCTATGACAATGCAGAGAAACGTCTGCAGAAAGACCA 75 Query 12497 GAACGGTGCAGATATCCAGGATAA 12520 |||||| || ||||| | ||||| Sbjct 74 GAACGGCGCTGATATACCCGATAA 51 >seq995 Length=35532 Score = 80.6 bits (88), Expect = 5e-11 Identities = 44/44 (100%), Gaps = 0/44 (0%) Strand=Plus/Plus Query 23179 GACACCATCCCTGTCTTCCCCCACATGATGTGGGGGtttttttt 23222 |||||||||||||||||||||||||||||||||||||||||||| Sbjct 25604 GACACCATCCCTGTCTTCCCCCACATGATGTGGGGGTTTTTTTT 25647 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 98175081108060