Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acytostelium_20leptosomum_20[genbank_20GCA_5F900092245.1_202017-01- 02] 28,227 sequences; 57,256,845 total letters Query= NC_005066.1 Length=164018 Score E Sequences producing significant alignments: (Bits) Value seq3869 163 3e-35 seq2516 158 1e-33 seq2261 95.1 1e-14 >seq3869 Length=8584 Score = 163 bits (180), Expect = 3e-35 Identities = 290/421 (69%), Gaps = 4/421 (1%) Strand=Plus/Plus Query 135785 CATCAGGTTATTAATCTGTACGCCGTAATCAAGATGACGAATGCGGTTATCTTCCACCCC 135844 |||||| || || |||||||| ||||| || | ||||||| |||||| | || || Sbjct 4353 CATCAGCTTGTTGATCTGTACCCCGTAGTCCATGTGACGAACGCGGTTGGCGTCGGTACC 4412 Query 135845 CTTATTGTTCTTTAACACAATCAGACTTTCAAACTCTAAATGCCACATTGGGTAATAGAG 135904 ||||| || | ||| | ||| ||||| | || | ||||||||||||||| |||| Sbjct 4413 ACGGTTGTTTTTCAGCACCAGCAGGCTTTCCACTTCCAGATGCCACATTGGGTAGAAGAG 4472 Query 135905 AGTCGCCGCCCCGCCACGAATACCGCCTTGTGAGCATGACTTAACGGCAGTCTGAAAATG 135964 || ||||| ||||| || | ||||| || ||||| || || || || ||||| ||||| Sbjct 4473 GGTTGCCGCGCCGCCGCGCACGCCGCCCTGCGAGCAGGATTTCACCGCGGTCTGGAAATG 4532 Query 135965 TTTCCAGAATGGGATAACGCCAGTATGACGAA--CTTCACCATGCCCGATCTTAGATCCT 136022 || |||| || || ||| || || ||| |||| || | |||| || Sbjct 4533 CTTGTAGAACGGAATGCAGCCGGTGTG--GAAGGCTTCGCCGCCGCGGATCGGGCTGCCC 4590 Query 136023 TCCGCGCGAATCATACCAGCGTTGATACCGATGCCAGCACGCTTGCTAATATACTTGATG 136082 ||||||||| || |||||||| |||||||| || |||| | || || || | Sbjct 4591 AGCGCGCGAATGCGCCCGGCGTTGATGCCGATGCCGGCGCGCTGGGAAACGTATTTCACA 4650 Query 136083 ATTGCATTTGCTGTTTCGTTGATGCCCTGCAATGAGTCATCACTTTCAATCACCACGCAC 136142 || || | | || |||||||| | || ||| | | || |||| |||||| Sbjct 4651 ATCGCGCTGGAGGTGGCGTTGATGGAATCCAGGCTGTCGCCGCACTCGATCAGCACGCAG 4710 Query 136143 GAACTAAATTGTCGTGTTGGAGTACGCACACCCGCCATAATCGGAGTAGGCAGAGAGATT 136202 || || || || || ||||| |||||||| || | ||| ||||| || ||||| |||||| Sbjct 4711 GAGCTGAACTGACGGGTTGGGGTACGCACGCCGGACATGATCGGCGTCGGCAGCGAGATT 4770 Query 136203 T 136203 | Sbjct 4771 T 4771 >seq2516 Length=21774 Score = 158 bits (174), Expect = 1e-33 Identities = 141/177 (80%), Gaps = 0/177 (0%) Strand=Plus/Minus Query 53628 TTCGGTAAAGGTACGCGCGATAACGTCACGCTGCTGGTCTGGAGTCAGACTATTGAAGCG 53687 ||||||||||||||| ||||| ||||| |||||||| || || |||||| |||||||| Sbjct 1952 TTCGGTAAAGGTACGGGCGATTACGTCGCGCTGCTGTTCCGGCGTCAGAGAGTTGAAGCG 1893 Query 53688 CACCGCGTAACCAGAAACGCGAATTGTAAGCTGCGGGTACTTCTCAGGATGTTCAACAGC 53747 |||||||| || ||||| ||||| || |||||||| || || || ||||| ||||| || Sbjct 1892 TACCGCGTAGCCGGAAACACGAATGGTCAGCTGCGGATATTTTTCCGGATGCTCAACCGC 1833 Query 53748 GTCCAGCAACATTTCTCGTAACAATACGTTAATATTCAAATGCTGACCACCTTCAAC 53804 |||||||| |||| || || ||||||| |||| |||||||| ||||| || Sbjct 1832 GTCCAGCAGGGTTTCGCGACGCAGCACGTTAACGTTCAGGTGCTGACCGCCTTCGAC 1776 >seq2261 Length=3986 Score = 95.1 bits (104), Expect = 1e-14 Identities = 123/170 (72%), Gaps = 0/170 (0%) Strand=Plus/Minus Query 53632 GTAAAGGTACGCGCGATAACGTCACGCTGCTGGTCTGGAGTCAGACTATTGAAGCGCACC 53691 || |||||||| | ||||| || ||||||| ||| ||||| || || || || Sbjct 674 GTGAAGGTACGGGTAATAACATCCTGCTGCTGTTCTTTGGTCAGGGAGTTAAAACGTACG 615 Query 53692 GCGTAACCAGAAACGCGAATTGTAAGCTGCGGGTACTTCTCAGGATGTTCAACAGCGTCC 53751 ||||| ||||| || || || || |||||||| || || || || | ||| | ||||| Sbjct 614 GCGTAGCCAGATACACGGATGGTCAGCTGCGGATATTTTTCCGGGTTTTCCATCGCGTCG 555 Query 53752 AGCAACATTTCTCGTAACAATACGTTAATATTCAAATGCTGACCACCTTC 53801 |||| |||||| || || ||||| | |||| |||||||||||||| Sbjct 554 AGCAGCATTTCGCGGTTCATGACGTTCACGTTCAGGTGCTGACCACCTTC 505 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 524544455719760