Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acytostelium_20leptosomum_20[genbank_20GCA_5F900092245.1_202017-01- 02] 28,227 sequences; 57,256,845 total letters Query= NC_005260.1 Length=233234 Score E Sequences producing significant alignments: (Bits) Value seq4092 259 7e-64 seq3869 179 6e-40 >seq4092 Length=20610 Score = 259 bits (286), Expect = 7e-64 Identities = 762/1155 (66%), Gaps = 21/1155 (2%) Strand=Plus/Plus Query 37629 TTCATGCAGGCCGATATAGCCGATACTGACAGAAGCGCGTCCATTTTCAAATGCTTTCAT 37688 |||||| | ||||||||||| | | | || ||||| || |||| || | | || Sbjct 16669 TTCATGGATACCGATATAGCCCAGAGAAATGGACGCGCGGCCGTTTTTGAA-GATCTCGG 16727 Query 37689 -GATATCGTCATCTGGATTCAGACGTACACCGCAGGCGCCTTCGACGTAAAGAATCGGAG 37747 || ||||| || | ||||| || || |||||||||||||| | || || ||||| | Sbjct 16728 AGACGTCGTCGTCGGCTTTCAGCCGCACGCCGCAGGCGCCTTCCATATACAGGATCGGCG 16787 Query 37748 CCACGCTTGCCTTAACGCCACGCAGACGATCAACACGTACCATTAGAGCTTGTTTAACTA 37807 |||||| ||||| || || ||| || | | ||| ||| || |||| | | Sbjct 16788 CCACGCGAGCCTTCACTCCTTCCAGGCGGGCGATACGGGTCATCAGCGCTTTGCGCGCCA 16847 Query 37808 CTTCCATACGCTCTTCCAGAAGCTCCCAGAAA-CGCATATGATTGCCGTTTGCGTCGAGT 37866 | || ||||| ||||| ||| ||||||| || | | || ||| || || || || Sbjct 16848 GCTGCAGGCGCTCGTCCAGCAGCGCCCAGAAGGCGGCT-TCATCGCCTTTCGCTTCCAGG 16906 Query 37867 GCGATACGCGGCAGATTCAGAGTAACAACCCCTAGATTATTACGACCTTCGTGAACTTCA 37926 ||||| |||||||| || ||| | | || || || ||||| || || || || || | Sbjct 16907 GCGATGCGCGGCAGGTTGAGACTGATCACGCCGAGGTTATTGCGTCCATCATGCACCTGC 16966 Query 37927 TTGCCATTTTCGTCTTCCCA-ACGATGCAAGAAACTGCGGCATCCCATAGGGAACTTAAA 37985 | ||| || |||| |||||| || | | ||| |||||||| ||||| || ||||| Sbjct 16967 TCGCCGTTCTCGTTTTCCCATACCCCG-AGGAAGCTGCGGCAGCCCATCGGCGTTTTAAA 17025 Query 37986 GCTGCCAGTTG--TTTCAACAACTTTATCATAACTCAGAATATCTGGATACATACGCTTA 38043 | || | || ||||| || || ||| || | || ||||| || ||||| ||||| Sbjct 17026 -CGACCCGGTGACTTTCACCACCTG-ATCGTAGTTGAGGATATCCGGGTACATGCGCTTG 17083 Query 38044 GAAGCGCACTCCAGTGCCAGTTGCTTGATACGATAAAGCGGGTCAGTTGGCTTCAAGTTG 38103 ||||||||||| ||||| || ||||| || |||||| ||| ||| Sbjct 17084 CTGGCGCACTCCAGCGCCAGCTGTTTGATGTCGTAGTTCGGGTCGCCGAACTTATGGTTC 17143 Query 38104 TGTCCGTCTTTCAGAGCAAACACCAGTTTCGGGAACACCGGAGTGATACCCTCTTTGCCA 38163 | ||||| | || |||||||||||||||||||||| || | | | ||| || Sbjct 17144 AGGCCGTCGCGGATCGCGAACACCAGTTTCGGGAACACCGCGGTTTTGCGATTTTTACCG 17203 Query 38164 AGTCCAGCCAGTCGAACTTTCAAGATCGCTTCCTGAATCAGTTCAGCTTCCCAGCTTTCA 38223 || || || | || || |||| | ||| ||||| | ||||||||| Sbjct 17204 AGGCCGGCAATGCGGTTGCGCAGAATCGACTGCTGGATCAGCCGCGATTCCCAGCTGGTG 17263 Query 38224 CCCAGACCAAAGCCGAATGTACAGAAGGGAGTTTGACCGTTCGCGGAGTGAAGAGTGTTC 38283 || || || || ||||| || ||| || || || ||||| |||| || || ||||| Sbjct 17264 CCAAGGCCGAACCCGAAGGTGACGAACGGCGTCTGGCCGTTGGCGGTATGCAGTGTGTTG 17323 Query 38284 ACCTCGTATTCGAGTCCCTGCATTGCATCATA-CACAGCTTTGTGAGTCTTTGCAATAGC 38342 ||||| || || || ||| | || || || ||| |||| | || || || Sbjct 17324 ACCTCATACTCCAGCGACTGGAAGGCGTCGTAGCAC-TCTTTTTCGGTACGGGCGCGGGC 17382 Query 38343 GTATTCTTTCGCATCTGGAATTTTCCAATAACGGGCTTCGTCCAAATGCTTTTCATGAGT 38402 || ||| ||||| || || | ||| | ||| | |||||||| ||| Sbjct 17383 ATAGCCTTCGGCATCCGGGATCTGCCACTCTTCGGCGATTTTGCGATGCTTTT--TGAAG 17440 Query 38403 CAT--CTTAACATACGGTGCCAGCACTTCGTCAATACGATTAATTGTGTTGCCGCCGTAA 38460 | | | || |||| ||||||||||| || || || || || ||| ||||||||||| Sbjct 17441 CTTTCGCTGACGAACGGCGCCAGCACTTCATCGATGCGGTTGATGGTGGTGCCGCCGTAA 17500 Query 38461 ATGTGACTTGCTACTTGCGCAATAATCTGAGCGACTACGGCAGCAGCGGTAGAAATGCTT 38520 || || || || || || || || ||||| || || || | |||||||| || Sbjct 17501 ATATGGCTGGCGACCTGGGCGATGATCTGCGCCGTCACCGCGGTGGCGGTAGAGATAGAC 17560 Query 38521 TTCGGAGTTTCGATCTGTGCATTTCCCATACGGAA-CCCGCGATCTAACATGCCTTTGAC 38579 ||||| | ||||||| || || ||||| || ||| | || | ||||||||| | Sbjct 17561 TTCGGCGGCTCGATCTCCGCGTTGCCCATCTTAAAGCCCTGGGTC-AGCATGCCTTTCAG 17619 Query 38580 ATCTATCAACATGCAGTTAAACATTGGGAAGAATGGAGAATAGTCAAGATCATGGAAGTG 38639 ||| |||| ||||||||| ||||| |||||||| || || || || || ||||| |||| Sbjct 17620 ATCGATCAGCATGCAGTTGAACATCGGGAAGAAGGGCGAGTAATCGAGGTCATGATAGTG 17679 Query 38640 CAGCCAGCCTTTTTCGTGTGCTTGCATAACTTCAACAG---GAAGATAATGCTTTGCAAA 38696 | | ||| ||||| || || || || | | || | ||| || | Sbjct 17680 GATCATGCCGCGCTCGTGGGCCATCACCACATCGTGGGGCAGCAGGTGCTGCCGGGCGTA 17739 Query 38697 GTGCTTACTAACAATACCAGCAACCAGATCGCGTTGAGTAGGGATTACTTTAGCGTCTTT 38756 |||||| || ||||| || | ||| ||||| || || ||||| |||||| ||| || Sbjct 17740 GTGCTTGGCGACGATACCGGCCAGCAGGTCGCGCTGGGTCGGGATGACTTTACTGTCCTT 17799 Query 38757 GTTAGCATTCTCATT 38771 || || || || || Sbjct 17800 ATTGGCGTTTTCGTT 17814 Score = 116 bits (128), Expect = 6e-21 Identities = 267/396 (67%), Gaps = 6/396 (2%) Strand=Plus/Plus Query 37018 ACTTCATCCTGCTTGCCGCGATTAAATG--CGCGAGAACCAGGCGCACCGAGATAACCGC 37075 || || |||||||||||| || || | |||| | || ||| ||||||||||||| Sbjct 16061 ACCTCTTCCTGCTTGCCGGCGTTGAACGGCCGCGCGT-CCGGGCTG-CCGAGATAACCGC 16118 Query 37076 ATACGCGACGAATAACGTTCATTTTGGTATCGTCATGATTACCACATTTAGGACATTCGT 37135 | || || || ||||| | || |||| || ||||| ||||| || || Sbjct 16119 ACACCCGGCGGGTAACGGAAACGCGGGCGGCGTCGTGGTTACCGCATTTCGGGCAGGTAA 16178 Query 37136 ACCCTTTGGAAGTAGCAGT-GAATTCACCGTGATAGCCACATTCAAAGCAAACATCAACA 37194 | || ||| || ||| | ||| || ||| | | || || || |||| |||| | Sbjct 16179 AGCCCTTGCTGGT-GCACTCGAACTCGCCGGTAAAACCGCACTCGTAGCACTCATCGATC 16237 Query 37195 GGAGTATTTGTTCCGTAATACGGTGTGTTCAGATAAGCATAATCCCAAACGTCTTCCAAC 37254 || ||||| || ||||| ||||| || | |||| |||||||| |||||||||| | Sbjct 16238 GGCGTATTGGTCCCGTAGTACGGCACGTGCTGATAGCTGTAATCCCACACGTCTTCCAGC 16297 Query 37255 GCTTTCAGATTATTTTTCATATTCGGATATTCTCCGTATGAAATAAATCCACCTGAACTC 37314 || || || |||| | |||||||| || || ||||| |||| || || || | Sbjct 16298 GCCTTGAGGTTATGCTGGATATTCGGGTACTCGCCGTAGCAAATGAACCCCCCGTTGGCC 16357 Query 37315 AGAGGAATAAATTGCTTTTCAAAATCAATCTTGTCATAAGGATTGGTATTATGACGGACG 37374 || || | || ||| ||||| ||||| || || || ||| || | ||| Sbjct 16358 AGCGGCGGGTACGGCGCTTCGAAATCGATCTTATCGTACGGGTTGACCTTCTTCTCCACG 16417 Query 37375 TCGAGGTGGAAGCTGTTTGTGTAATAATCTTTATCG 37410 ||||||||||||||||| ||||| ||| |||| ||| Sbjct 16418 TCGAGGTGGAAGCTGTTGGTGTAGTAACCTTTGTCG 16453 >seq3869 Length=8584 Score = 179 bits (198), Expect = 6e-40 Identities = 315/456 (69%), Gaps = 2/456 (0%) Strand=Plus/Plus Query 43574 GGACTAAAGAGCGTGATATAGTCGTCATTTTTCAGACGCTCGAAAAACAGCTTGTTGATT 43633 || || || || || |||| | || | || |||||| | | | |||||||||||| Sbjct 4309 GGGCTGAACAGGGTAATATCGCCGCCCTTCAGCAGACGGGTGTACATCAGCTTGTTGATC 4368 Query 43634 TGGATACCGTAGTCAAGCTGGCGAATTCGATTTTCTTCCACGCCCTTGTTGTTTTTCAGA 43693 || | |||||||| | || |||| || || | || || |||||||||||| Sbjct 4369 TGTACCCCGTAGTCCATGTGACGAACGCGGTTGGCGTCGGTACCACGGTTGTTTTTCAGC 4428 Query 43694 ACAAGGATTTTTTCAACTTCAAGATGCCACATTGGATAGTAAAGAGTAGCAGCGCCACCG 43753 || || | |||| ||||| |||||||||||||| ||| | || || || ||||| ||| Sbjct 4429 ACCAGCAGGCTTTCCACTTCCAGATGCCACATTGGGTAGAAGAGGGTTGCCGCGCCGCCG 4488 Query 43754 CGTACACCACCCTGTGAGCAACTTTTTACCGCAGTCTGGAAATATTTCCAGAACGGAATA 43813 || || || ||||| ||||| ||| ||||| |||||||||| || |||||||||| Sbjct 4489 CGCACGCCGCCCTGCGAGCAGGATTTCACCGCGGTCTGGAAATGCTTGTAGAACGGAATG 4548 Query 43814 ATACCAGTGTGGCGAACTTCACCACTTCGAATGCGAGAACCTTCGGCACGAATAGCG-CC 43872 || |||||| |||| || | || || | || || ||||| ||| || Sbjct 4549 CAGCCGGTGTGGAAGGCTTCGCCGCCGCGGATCGGGCTGCCCAGCGCGCGAAT-GCGCCC 4607 Query 43873 ACCGTTGATACCGATACCAGCGCGTTTGCTAATATAGTCAACGATTGAACTTGCGGTAGC 43932 ||||||| ||||| || ||||| | | || || | || || | || | ||| || Sbjct 4608 GGCGTTGATGCCGATGCCGGCGCGCTGGGAAACGTATTTCACAATCGCGCTGGAGGTGGC 4667 Query 43933 GTTAATGCTATCGAGTTCGTCGCCGCTTTCGATCTTCACGCATGAGCTAAACTGGCGAGT 43992 ||| ||| ||| || |||||||| |||||| |||||| ||||| ||||| || || Sbjct 4668 GTTGATGGAATCCAGGCTGTCGCCGCACTCGATCAGCACGCAGGAGCTGAACTGACGGGT 4727 Query 43993 CGGGGTTCGAACACCAGCAAGAATTGGCGTCGGTAG 44028 ||||| || || || | | || |||||||| || Sbjct 4728 TGGGGTACGCACGCCGGACATGATCGGCGTCGGCAG 4763 Score = 91.5 bits (100), Expect = 2e-13 Identities = 109/148 (74%), Gaps = 0/148 (0%) Strand=Plus/Plus Query 40709 CAGATACTGGGTGCCTTTCAGGTGAAGCTGTTCATCCCGCGCAATCAGACGCATGATCTT 40768 || || ||||||||| ||||||| ||| |||||| || || ||||| || || || || Sbjct 2248 CATATGCTGGGTGCCGGTCAGGTGCAGCGCTTCATCGCGGGCGATCAGGCGGATAATTTT 2307 Query 40769 AGCGTTGCCTTCCATGATACCACGCTCACCGAATGAGAACGTGCAAGCAAAGCTAACATA 40828 |||||||||||||| | || || | || | ||| | ||| || ||||| || || Sbjct 2308 GGCGTTGCCTTCCATCAGTTTGCGTTCGGCAAAGGCGAAGGAGCAGGCGAAGCTGACGTA 2367 Query 40829 GAAACGAATCGCTTCCAAAGCGTTTACG 40856 ||| || |||||||||| || || ||| Sbjct 2368 GAAGCGGATCGCTTCCAGGGCATTAACG 2395 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 745957505318480