Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acytostelium_20leptosomum_20[genbank_20GCA_5F900092245.1_202017-01- 02] 28,227 sequences; 57,256,845 total letters Query= NC_005284.1 Length=54865 Score E Sequences producing significant alignments: (Bits) Value seq373 114 5e-21 seq6137 84.2 8e-12 >seq373 Length=63667 Score = 114 bits (126), Expect = 5e-21 Identities = 184/262 (70%), Gaps = 2/262 (1%) Strand=Plus/Plus Query 1941 GCTCGAGGACGAAGGGCTGACGCCGGTCACGATCGTGCAGAACTACACGAACATGTCGGA 2000 ||| ||||| || ||||| ||| ||| ||| || || | || | ||| || Sbjct 15220 GCTTGAGGAAGAGGGGCTTGAGCCTGTCGAGATAAGACAAAATTTTACCCATATGAGTGA 15279 Query 2001 CCCAATGAAGGAGCTTGAGGCGGCGATTACGGCGGGCCGATTCCATCACGACGGCAACCC 2060 || |||| ||| ||||||| ||| | | |||| |||||||||| ||||| |||| Sbjct 15280 TCCTATGAGAGAGATTGAGGCTGCGCTCATCTCGGGGAGATTCCATCATGACGGACACCC 15339 Query 2061 GATCATGACGTGGTGTGTCAGCAACGTCATCGGCAAGAACCTGCCGGGAAATGACGATGT 2120 |||||| |||||| | ||| || ||||| || |||| || |||| ||||||| | Sbjct 15340 TGTCATGAACTGGTGTATTTCCAATATCGTCGGCCAGTACCTTCCCGGAAGTGACGATAT 15399 Query 2121 GGTGCG-CCCGATCAAGCAGGGCAACGACAACAAGATTGACGGTGCTGTCGCACTAATCA 2179 ||||| |||| ||| ||||| | | |||||||| || ||||| || | |||| | Sbjct 15400 TGTGCGTCCCGGGAAAGAAGGGCGGC-AGAACAAGATAGATGGTGCGGTTGGTTTAATGA 15458 Query 2180 TGGCGATAGGCCGCGCCATGCT 2201 ||| | | || ||||||||||| Sbjct 15459 TGGGGCTGGGGCGCGCCATGCT 15480 Score = 107 bits (118), Expect = 7e-19 Identities = 171/241 (71%), Gaps = 6/241 (2%) Strand=Plus/Plus Query 794 CCTGGCAGAAGTTCGGCCTGATGGCGA--CGTTCGGCTGGCTCAACAAGCGCACCGGCAA 851 ||||||||||||||| || ||||| |||| || ||| | |||||| || ||| Sbjct 14061 CCTGGCAGAAGTTCGCTCT--TGGCGTACCGTTTGGATGGGTAAACAAGAAGACAGGCCT 14118 Query 852 GCGCCGGTTTCGAGAAAGCTACTGGGAGGTCCCCAGAAAGAACGGCAAATCGGTGATTGC 911 ||| || || |||| ||| ||||| ||||| |||||||| ||||| | ||||| Sbjct 14119 GCGTCGTTTCTCTGAAATCTATATCGAGGTGCCCAGGAAGAACGGGAAATCCGCTATTGC 14178 Query 912 CGCGGGCGTTGGCATCGGCATGTTC-GTGCTGGACGACGAGTTCGGTGCCGAGGTGTACG 970 ||| | || || | ||||| |||| | | | |||| ||||| || || || Sbjct 14179 CGCTGCTGTAGGAAATTATATGTTTTGTGCAG-ATGGCGAGCATGGTGCAGAAGTCTATT 14237 Query 971 CCGGCGCGACGACTGAAAAGCAGGCCTGGGAGGTCTTTCGCCCGGCGCGGCTGATGGTGA 1030 |||||| ||||||||||| ||||| ||| |||| ||| ||||||| || ||||||| Sbjct 14238 GCGGCGCCACGACTGAAAAACAGGCATGGAAGGTATTTTCTCCGGCGCTGCAAATGGTGA 14297 Query 1031 A 1031 | Sbjct 14298 A 14298 >seq6137 Length=2664 Score = 84.2 bits (92), Expect = 8e-12 Identities = 159/225 (71%), Gaps = 12/225 (5%) Strand=Plus/Minus Query 18620 TGTACGGGATCGATCTGAAATGGGCGTTTCCGGGTGACGGATCCGCTGGCGACACGCAGC 18679 ||| ||| |||| | |||| |||| |||||| || || ||| | || || |||| Sbjct 708 TGTTCGGCATCGGTTTGAAGTGGG-GTTTCCC--TGCTGG---CGCCGAAGATACCCAGC 655 Query 18680 GAACGGAGATCTGGTACAGCCGCACGCCGAATCGCGACGACGCGACCAAGTTCTCCGACT 18739 | |||||| ||||||||| || ||| || | || || |||||| ||| | | || | Sbjct 654 GGACGGAGCTCTGGTACAACCCGACGAACAACCTCGGCGCCGCGACGAAGCTGGCGGATT 595 Query 18740 TCGCGTATCCGCAGGC-GTCGACGTCGTAT-CAGGGGCTCGCGGTCGGGCAGGT-GTTTT 18796 | || || |||||||| | | || || || ||| ||| || | ||||| | ||| | Sbjct 594 TGGCATACCCGCAGGCTGACTAC--CGCATGCAGTCGCT-GCTGGCGGGCGCGCAGTTCT 538 Query 18797 ATTTCTGGGCGCGCCTGGTCGACACGTCCGGCAACGTCGGGCCGT 18841 ||||||||||||||||| ||| |||||||| |||| |||| Sbjct 537 TCTTCTGGGCGCGCCTGGTGGACCGCACCGGCAACATCGGTCCGT 493 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 175387591134298