Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acytostelium_20leptosomum_20[genbank_20GCA_5F900092245.1_202017-01- 02] 28,227 sequences; 57,256,845 total letters Query= NC_005309.1 Length=359853 Score E Sequences producing significant alignments: (Bits) Value seq8653 132 1e-25 seq4240 131 4e-25 seq3381 127 5e-24 seq3533 113 1e-19 seq1043 104 5e-17 >seq8653 Length=1535 Score = 132 bits (146), Expect = 1e-25 Identities = 148/198 (75%), Gaps = 0/198 (0%) Strand=Plus/Plus Query 104363 GTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCA 104422 ||||| || |||||||| || ||||| ||||| | ||||||||| ||||| || || Sbjct 224 GTAGACTCCTTCTGAATGTTGTAGTCGCCGAGAGTGCGACCGTCTTCAAGTTGCTTGCCG 283 Query 104423 GCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTT 104482 ||||| || | | |||||||| || || || |||||||| || ||||||||||| || Sbjct 284 GCAAAGATCAAACGTTGTTGATCGGGTGGGATACCTTCTTTGTCTTGAATCTTTGCCTTG 343 Query 104483 ACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGTT 104542 || || || | || || || ||||||||||| || ||||| ||||| | ||| Sbjct 344 ACGTTCTCGATAGTGTCAGAGCCCTCGACCTCTAGTGTGATGGTCTTTCCAGTCAATGTC 403 Query 104543 TTTACAAATATCTGCATT 104560 |||||||| || |||||| Sbjct 404 TTTACAAAGATTTGCATT 421 >seq4240 Length=2116 Score = 131 bits (144), Expect = 4e-25 Identities = 150/199 (75%), Gaps = 2/199 (1%) Strand=Plus/Minus Query 104363 GTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCA 104422 || || || ||||| ||||| |||||||| || || | ||| || || | || ||||| Sbjct 1411 GTTGACTCCTTCTGGATATTGTAGTCAGAGAGGGTACGACCATCCTCCAACTGCTTTCCG 1352 Query 104423 GCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTT 104482 ||||| || || | || || || || || ||||| || || ||||| ||||| || || Sbjct 1351 GCAAAGATGAGACGTTGCTGGTCGGGTGGAATTCCCTCCTTGTCCTGGATCTTGGCCTTG 1292 Query 104483 ACATTTTCTACGGTATCGCTAGGT-TCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGT 104541 || || || | ||| || | || || ||||| || ||||||||||||||||| ||||| Sbjct 1291 ACGTTCTCGATGGTGTC-CGAGCCCTCGACCTCAAGGGTAATAGTCTTACCAGTGAGTGT 1233 Query 104542 TTTTACAAATATCTGCATT 104560 |||||| || ||||||||| Sbjct 1232 TTTTACGAAAATCTGCATT 1214 Score = 122 bits (134), Expect = 2e-22 Identities = 145/197 (74%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 104363 GTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCA 104422 || || || ||||||||||| |||||||| ||||| | |||||| || || || ||||| Sbjct 1639 GTGGACTCCTTCTGAATATTGTAGTCAGAGAGAGTGCGACCGTCCTCGAGCTGCTTTCCG 1580 Query 104423 GCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTT 104482 ||||| || || | ||| || || || || ||||| || || ||||| ||||| || || Sbjct 1579 GCAAAGATGAGACGCTGCTGGTCGGGTGGGATTCCCTCCTTGTCCTGGATCTTGGCCTTG 1520 Query 104483 ACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGTT 104542 || || || | ||| || ||| ||||| || || || ||||| ||||| | || Sbjct 1519 ACGTTCTCGATGGTGTCAGAGCCTTCGACCTCAAGGGTGATGGTCTTTCCAGTCAAAGTC 1460 Query 104543 TTTACAAATATCTGCAT 104559 || || || |||||||| Sbjct 1459 TTGACGAAGATCTGCAT 1443 >seq3381 Length=12314 Score = 127 bits (140), Expect = 5e-24 Identities = 161/219 (74%), Gaps = 2/219 (1%) Strand=Plus/Minus Query 104342 AGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTA 104401 || ||||| || | || | || || |||||||| || || |||||| || || | | Sbjct 1176 AGTCTAAGGACCAAGTGAAGGGTGGACTCTTTCTGGATGTTGTAGTCACCGAGGGTACGA 1117 Query 104402 CCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCT 104461 || ||||| | ||| |||||||||||||| || | ||| || || || || || ||||| Sbjct 1116 CCATCTTCCAATTGCTTTCCAGCAAAAATGAGACGCTGCTGGTCGGGTGGAATACCTTCC 1057 Query 104462 TTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAG-GTTCTACCTCTAGTGT 104520 || || |||||||| || || ||||| || | ||| || | || || ||||| || || Sbjct 1056 TTGTCTTGAATCTTAGCCTTGACATTCTCAATGGTGTC-CGAGCCCTCAACCTCAAGAGT 998 Query 104521 AATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCAT 104559 || ||||| ||||| || || || ||||| |||||||| Sbjct 997 GATCGTCTTGCCAGTGAGAGTCTTGACAAAGATCTGCAT 959 Score = 116 bits (128), Expect = 9e-21 Identities = 144/197 (73%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 104363 GTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCA 104422 |||||||| || || || || ||||| ||||| | || || || || || || ||| Sbjct 1611 GTAGATTCCTTTTGGATGTTGTAGTCGCCAAGAGTGCGGCCATCCTCGAGCTGCTTGCCA 1552 Query 104423 GCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTT 104482 ||||| || | | ||| || || || || || || || ||||| || |||||||| ||| Sbjct 1551 GCAAAGATCAAACGCTGCTGGTCGGGTGGGATACCCTCCTTATCTTGGATCTTTGCCTTT 1492 Query 104483 ACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGTT 104542 || || || | |||||| ||| ||||| || || ||||||||||||||||| || Sbjct 1491 ACGTTCTCAATGGTATCAGAGCCTTCAACCTCGAGAGTGATAGTCTTACCAGTAAGAGTC 1432 Query 104543 TTTACAAATATCTGCAT 104559 || || || |||||||| Sbjct 1431 TTGACGAAGATCTGCAT 1415 >seq3533 Length=1137 Score = 113 bits (124), Expect = 1e-19 Identities = 395/602 (66%), Gaps = 25/602 (4%) Strand=Plus/Plus Query 268696 AGATAGATTTGTGATATTTCCAATACAGCATGGTGATATATGGAGGATGTACAAACAGGC 268755 ||||||||| || | || || || | ||| || |||||| |||||||| | || Sbjct 364 AGATAGATTCGTTCTCTTCCCTATCAAACATACAGACATATGGGATATGTACAAGAAAGC 423 Query 268756 CGTTGCTTCTTTTTGGACTGTAGAAGAAGTAGATCTGTCTTATGACTTAATAGATTGG-- 268813 | ||||| || ||||| | ||| ||| |||| || ||| ||| | | |||||| Sbjct 424 AGAAGCTTCATTCTGGACAGCAGAGGAATTAGACTTGGCTTCTGATATGAACGATTGGGA 483 Query 268814 -AAAAATTTAAAACCAGAAGAAAGAAGATTTATATCTTATATTCTTGCGTTTTTTGCAGT 268872 || || | || | ||| || ||||| | || | || || || ||||| | Sbjct 484 GAACAAGCTCAATGACAACGAACGACACTTTATCACCAATGTGCTGGCATTCTTTGCCGC 543 Query 268873 TAGTGATGGTATCGTTAACGAAAATCTAG----TAGAGAAGTTC-TGTCAAGAGGTACAG 268927 || |||||||| || || ||||| | | || ||| |||| |||||||| Sbjct 544 ATCAGACGGTATCGTCAATGAGAATCTCGCCACTCGA----TTCATGTCT-GAGGTACAA 598 Query 268928 ATTCCTGAAGCCAGATGTTTTTACGGATTCCAGATAGCTATAGAAAATATTCATTCAGAG 268987 || || || ||| | || || || || || ||||| || || || || ||||| ||||| Sbjct 599 ATACCAGAGGCCCGCTGCTTCTATGGCTTTCAGATCGCGATTGAGAACATTCACGCAGAG 658 Query 268988 ATGTACAGTCTATTAATAGATACTTATATAGATGATAACAACGAAAAGAAA-AGACTATT 269046 | |||||||| || || || || || | | || || ||||||| || || Sbjct 659 ACCTACAGTCTTTTGATCGACACATACGTTAAAAGTAGCAC---AAAGAAACAGGAGCTT 715 Query 269047 TTCTTCT--ATGAGA-ACTATGGACTGTGTGAGaaaaaaaTCTGAATGGGCTCTGAAATG 269103 ||| | || ||| || || | || | || || | || ||||| ||| || Sbjct 716 TTCAACGCGAT-AGAGACGATCCCCGCCGTAAAGAAGAAGGCAGAGTGGGCGCTGCGCTG 774 Query 269104 GATAAACGA-TAGCGCGCCTTACGGAGAAAGGTTAGTTGCTTTTGCCGCTGTAGAAGGTA 269162 ||| | | | | | | || || ||| | || || || ||||| || || || |||| Sbjct 775 GATCACCAACTCTTGTTCATT-CGCCGAACGTTTGGTGGCATTTGCTGCGGTTGAGGGTA 833 Query 269163 TATTCTTTT-CGGGGTCTTTTGCCGCTATCTTTTGGTTGAAGAAAAGAGGCCTTATGCCA 269221 | ||||| ||| |||||| || |||| |||||||||||||| || | |||||| Sbjct 834 TCTTCTTCAGCGGCAGCTTTTGT-GCCATCTACTGGTTGAAGAAAAGGGGTTTAATGCCA 892 Query 269222 GGATTAACTTTCTCTAACGAATTGATAAGCAGGGACGAAGGTTTACACTGCGACTTCGCT 269281 || | || || || ||||| |||| || | ||||| ||| ||||||||||||| ||| Sbjct 893 GGCCTTACCTTTTCCAACGAGCTGATCAGTCGTGACGAGGGTCTACACTGCGACTTTGCT 952 Query 269282 TG 269283 || Sbjct 953 TG 954 >seq1043 Length=1979 Score = 104 bits (114), Expect = 5e-17 Identities = 251/374 (67%), Gaps = 12/374 (3%) Strand=Plus/Minus Query 268919 GAGGTACAGATTCCTGAAGCCAGATGTTTTTACGGATTCCAGATAGCTATAGAAAATATT 268978 ||||| ||||| || || || | ||||| || |||||||| || || || || || || Sbjct 580 GAGGTGCAGATCCCAGAGGCACGTTGTTTCTATGGATTCCAAATCGCCATCGAGAACATC 521 Query 268979 CATTCAGAGATGTACAGTCTATTAATAGATACTTATATAGATGATAACAACGAAAAGAAA 269038 || || |||| |||||||| | || || || || || | |||| ||| ||||| Sbjct 520 CACTCTGAGACCTACAGTCTTCTCATCGACACCTACATCAAG---AACACCGAGAAGAAG 464 Query 269039 AGACTATTTTCTTCTATGAGA-----ACTATGGACTGTGTGAGaaaaaaaTCTGAATGGG 269093 | || || ||||| | | | ||||| | || | || ||| | || |||| Sbjct 463 A-AC-ATGCTCTTCCACGCCATCGAGACTATCCCCGCCGTTAAGAAGAAAGCCGACTGGG 406 Query 269094 CTCTGAAATGGATAAACGATAGCGCGC-CTTACGGAGAAAGGTTAGTTGCTTTTGCCGCT 269152 | || ||||| | | | || ||| | | || || | || || || ||||||||| Sbjct 405 CCTTGCGCTGGATCACCAAC-GCTCGCTCATTCGCCGAGCGTTTGGTCGCCTTTGCCGCT 347 Query 269153 GTAGAAGGTATATTCTTTTCGGGGTCTTTTGCCGCTATCTTTTGGTTGAAGAAAAGAGGC 269212 || || ||||| |||||| || ||| | | ||||||||| | ||||| | || Sbjct 346 GTCGAGGGTATCTTCTTTAGTGGCAGTTTCTGCTCGATCTTTTGGCTCAAGAAGCGCGGT 287 Query 269213 CTTATGCCAGGATTAACTTTCTCTAACGAATTGATAAGCAGGGACGAAGGTTTACACTGC 269272 | |||| || || | ||||| ||||| |||| || | ||||| ||||| |||||| Sbjct 286 TTAATGCACGGCTTGTCGTTCTCGAACGAGCTGATCAGTCGTGACGAGGGTTTGCACTGC 227 Query 269273 GACTTCGCTTGTTT 269286 ||||| || ||||| Sbjct 226 GACTTTGCCTGTTT 213 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1150981987053716