Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acytostelium_20leptosomum_20[genbank_20GCA_5F900092245.1_202017-01- 02] 28,227 sequences; 57,256,845 total letters Query= NC_005344.1 Length=39043 Score E Sequences producing significant alignments: (Bits) Value seq27510 389 1e-103 seq4405 214 4e-51 seq1687 176 1e-39 seq2322 174 4e-39 seq360 158 3e-34 seq44 141 2e-29 seq40 122 2e-23 seq3980 116 9e-22 seq7234 102 2e-17 seq4417 95.1 3e-15 seq76 95.1 3e-15 seq97 91.5 4e-14 >seq27510 Length=253 Score = 389 bits (430), Expect = 1e-103 Identities = 217/218 (99%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 33556 GGTTGCCATTGTGGCGATGCTTCTTGCTCCGGCCGAACCGTGGCTGATGCCATGTAGCTC 33615 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 253 GGTTGCCATTGTGGCGATGCTTCTTGCTCCGGCCGAACCGTGGCTGATGCCATGTAGCTC 194 Query 33616 AAGTACCTGACTGCGTAATACAGCCCGTCTGCCGTCTGGTTTTTCAGGACGGTTTTTCCA 33675 |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| Sbjct 193 AAGTACCTGACTGCGTAATACAGCCCGTCTGCAGTCTGGTTTTTCAGGACGGTTTTTCCA 134 Query 33676 GTATCTGTAGCTGCTGCGATGAACCCCGAACACATGGCAGAGTGTGACCACAGGATAATG 33735 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 133 GTATCTGTAGCTGCTGCGATGAACCCCGAACACATGGCAGAGTGTGACCACAGGATAATG 74 Query 33736 CGCTCTGAGTTTCCCGATTATCGAGAACTGTTCAGGGA 33773 |||||||||||||||||||||||||||||||||||||| Sbjct 73 CGCTCTGAGTTTCCCGATTATCGAGAACTGTTCAGGGA 36 >seq4405 Length=8230 Score = 214 bits (236), Expect = 4e-51 Identities = 138/150 (92%), Gaps = 2/150 (1%) Strand=Plus/Minus Query 33985 GTGTATTTCTGGTCAACAACCAGTTGAGCGGATTCGCGTTTAAACTCTGCGCTAAAATTT 34044 ||||| ||||||||||| ||||||||||||||||||||||||||||||||||| |||||| Sbjct 8228 GTGTAGTTCTGGTCAACGACCAGTTGAGCGGATTCGCGTTTAAACTCTGCGCTGAAATTT 8169 Query 34045 CtttttttCATTGGAGCACCTGTGTTGTTCTGAGGTGAGCATATCACCTCTGTTCAGGTG 34104 |||||||||||| |||||||||||||||||||||||||||||||||||||||||||| Sbjct 8168 CTTTTTTTCATTATGACACCTGTGTTGTTCTGAGGTGAGCATATCACCTCTGTTCAGGTG 8109 Query 34105 GCCAAATTCAGTGTGCCACTTCAAACCAAG 34134 |||||||||||| ||||||| |||||| Sbjct 8108 GCCAAATTCAGTAAACCACTTC--ACCAAG 8081 >seq1687 Length=800 Score = 176 bits (194), Expect = 1e-39 Identities = 202/271 (75%), Gaps = 23/271 (8%) Strand=Plus/Plus Query 37243 ATGAGCAGAGTCACCGCAATTATCTCCGCTCTGGTTATTTGCATCATCGTCTGCCTGTCA 37302 |||| |||||| ||||| |||||||||||||||||||| ||||||||||||||||||||| Sbjct 472 ATGAACAGAGTAACCGCGATTATCTCCGCTCTGGTTATCTGCATCATCGTCTGCCTGTCA 531 Query 37303 TGGGCTGTTAATCATTACCGTGATAATGCAATCGCCTACAAAGAGCAGCGCGATAAA--- 37359 |||||||||||||||||||||||||| || || ||||||||| |||||||| ||| Sbjct 532 TGGGCTGTTAATCATTACCGTGATAACGCCATTACCTACAAAGCCCAGCGCGACAAAAAT 591 Query 37360 GCCACA----TCCATC--------------ATCGCTGATATGCAGAAGCGGCAACATGAT 37401 |||| | | | | || |||| ||||||| ||| || | |||| Sbjct 592 GCCAGAGAACTGAAGCTGGCGAACGCGGCAATTACTGACATGCAGATGCGCCAGCGTGAT 651 Query 37402 GTAGCAGAACTTGACGCCAGATACACAAAGGAGCTTGCTGATGCTAACGC-GACTATCGA 37460 || || | ||| || | | |||||| |||||| | ||| |||| || || || || || Sbjct 652 GTTGCTGCACTGGATGAAAAATACACGAAGGAGTTAGCTAATGCGAAAGCTGAAAAT-GA 710 Query 37461 AAGTCTCCGTGCTGATGTTTCTGCTGGTCGT 37491 ||| |||| || |||| | ||||||||| Sbjct 711 TGCTCTGCGTGATGGTGTTGCCGCTGGTCGT 741 >seq2322 Length=24874 Score = 174 bits (192), Expect = 4e-39 Identities = 105/111 (95%), Gaps = 0/111 (0%) Strand=Plus/Minus Query 32879 TGAAGTGGTCAACAAAAACTGGCCACCGAGTTAGAGTTTTTCCAGTATCGATTTTCCGAT 32938 |||||||||||||||||||||||||||| ||||||||||||||||||||| ||||| ||| Sbjct 111 TGAAGTGGTCAACAAAAACTGGCCACCGCGTTAGAGTTTTTCCAGTATCGGTTTTCTGAT 52 Query 32939 TCGTTTGGGGGTAACCCACCGTTATATTCGTGCGGTCTTAGTGCACTGTAA 32989 |||||||| ||||||||||| ||||||||||||||||||||||| |||||| Sbjct 51 TCGTTTGGCGGTAACCCACCATTATATTCGTGCGGTCTTAGTGCGCTGTAA 1 >seq360 Length=29890 Score = 158 bits (174), Expect = 3e-34 Identities = 242/345 (70%), Gaps = 0/345 (0%) Strand=Plus/Plus Query 21566 GCCACCAAGCATTTGCATGGTTCCACCAACGCCTACGATAACTTCGGTAGTGAACCTATC 21625 ||| || ||||| |||||||| || || ||| || | |||||||| ||| | | || Sbjct 27239 GCCGCCCAGCATCTGCATGGTGCCGCCCACGTTCACCACCACTTCGGTGGTGTATTTGTC 27298 Query 21626 CTGTCCGCTTTGATCCTGCCATTTTCTTGTCCGCAATTTGCCTTCAAGATAAACCTCAGA 21685 ||| ||| |||||| ||| || | || |||| | |||||||| || |||| ||| Sbjct 27299 CTGACCGGATTGATCGGTCCACTTGCGGGTACGCAGCTGGCCTTCAATGTACACCTGAGA 27358 Query 21686 GCCTTTTCGCAGATATTCGCTGGCAATTTCTGCCAGTTTCCCGCTCATTACCACGCGGTG 21745 |||||| |||||||| || | || | ||| |||||||| ||| || || |||||||| Sbjct 27359 GCCTTTACGCAGATACTCACCAGCGACTTCCGCCAGTTTGCCGAACAGCACAACGCGGTG 27418 Query 21746 CCACTCCGTCTGCTCCTTTTGCTCTCCAGTTTGCTTATCACGCCATTGTTCTGACGTAGC 21805 |||||| |||||||| || || || || ||||| |||||||| ||| || || || Sbjct 27419 CCACTCGGTCTGCTCTTTCATTTCGCCGGTCTGCTTGTCACGCCAGGATTCGGAAGTTGC 27478 Query 21806 AACTGTAAGGTTTGCAAATGCCGTTCCTGATGGTGAATATCTGATTTCTGGATCATGCCC 21865 | || | ||| || | || || ||| || | | ||| || || ||||| Sbjct 27479 CAGCGTGAAGTTGGCGACAGCGCCGCCACTTGGCATGTAGCGTACTTCCGGGTCCTGCCC 27538 Query 21866 AAGGCGACCAATAATGATCACCTTATTTACGCCTCTGCTTGCCAT 21910 || ||| | | |||||||| |||||||||||||| ||||| Sbjct 27539 CAGATTACCGACGAGAATCACCTTGTTTACGCCTCTGCTGGCCAT 27583 >seq44 Length=21063 Score = 141 bits (156), Expect = 2e-29 Identities = 337/499 (68%), Gaps = 14/499 (3%) Strand=Plus/Plus Query 33053 GGCATCCATTCGTTCTTCAGACTCCTGAAGAAGCGTTCCATTGGGCTGTTATCCCAGCAG 33112 |||| |||||| | |||||||| | |||||||||||||||||| ||||||||||||||| Sbjct 20096 GGCACCCATTCTGTTTTCAGACTGCGGAAGAAGCGTTCCATTGGACTGTTATCCCAGCAG 20155 Query 33113 TTTCCGCGCCGGCTCATACTCTGTCTGATCTGGTATCGCCACAATAACTGCCGGAACTGC 33172 ||||| || ||||| | ||| || | ||| ||| ||||| | | || | | | | Sbjct 20156 TTTCCCCGTCGGCTGACACTTTGCTTTATCCTGTAACGCCAGAGAAGTTGTTGATATTTC 20215 Query 33173 CTGCTCGTATAATGACTGCCCTGATCGCTGTGGAACATCAC--CCCGCCGGGCTTACCAC 33230 | ||||| ||||| ||||| ||||| |||||||| || ||||| |||| ||||| Sbjct 20216 AGTCCTGTATATTGACTTCCCTGGTCGCTATGGAACATGACGTCCCGC--GGCTGACCAC 20273 Query 33231 GGGTTTCCCATGCCATTTCCAGCGCTTTCATGGTGAGCCTGCTGT-CCGGCGAGAAC-GA 33288 | || | ||||| ||| || | | | || || || |||| | || Sbjct 20274 GCACCTCATACGCCATCCGCAGGGCACTGCTTATCAG--GGCAGTATCGGCATTCGCTGA 20331 Query 33289 CATGGCCCAGCCCACTGGTTTTCTTGCGAACAGGTCGAGAACAACGGCGAGGTACGCCCA 33348 || | |||||| | | | || || || || | || || || || || ||| Sbjct 20332 CAGGCTCCAGCCGATAACCCTGCGGGCAAAAAGATCCATGACGACCGCCAGATAGCACCA 20391 Query 33349 GCGCTTACCCGTCCAGATATAGGTCACATCACCGCACCACACCTGATTTGGCTCGGTCAC 33408 ||| || || | ||||||||| || | ||| |||||||| ||| || |||||||| ||| Sbjct 20392 GCGATTTCCTGCCCAGATATACGTAATATCTCCGCACCATACCCTATCTGGCTCGGGCAC 20451 Query 33409 GGCGAACTGCCTTTCAAGGTAGTTAGGGATAGCA-ACATGTTCATGACCACCACGTTTAT 33467 |||||||| | |||| | || | || ||| |||||| |||| | || ||| | Sbjct 20452 AGCGAACTGGCGCTCAA-GCAGATTCGGCAGGCAGGTATGTTCCTGACGAGCATTTTTGT 20510 Query 33468 ACCGGTGAGT--CGGCTGCTGACAGCTGACCAGCCCCAGCTCTTTCATGAGCCTGCCAGC 33525 || | || | ||| ||||||| ||| ||| ||| | |||||| || | || || Sbjct 20511 ACTGATGTTTTCCGG--GCTGACAACTGCTCAGGTTCAGATATTTCATCAGACGCCCGGC 20568 Query 33526 AAGCCAGCGTCCCATCTGG 33544 | | | || | |||| || Sbjct 20569 ACGGTAACGGCTCATCGGG 20587 >seq40 Length=14228 Score = 122 bits (134), Expect = 2e-23 Identities = 73/77 (95%), Gaps = 0/77 (0%) Strand=Plus/Plus Query 16788 ACCTTCTCATCAAGCCAATCCGCCCACCACTGCATCATTTCTCTGCGCTTATCGAGATAC 16847 || || |||||||||||||||| ||||||||||||||||||||||||||||||||||||| Sbjct 1192 ACTTTTTCATCAAGCCAATCCGTCCACCACTGCATCATTTCTCTGCGCTTATCGAGATAC 1251 Query 16848 TGAGCATGGTTGTAAAT 16864 ||||| ||||||||||| Sbjct 1252 TGAGCGTGGTTGTAAAT 1268 Score = 122 bits (134), Expect = 2e-23 Identities = 70/72 (97%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 18426 CAGGCAATAAAAAACCGCCATCAGGCGGCTTGGTGTTCTTTCAGTTCTTCAATTCGAATA 18485 || |||| |||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 2853 CACGCAAGAAAAAACCGCCATCAGGCGGCTTGGTGTTCTTTCAGTTCTTCAATTCGAATA 2912 Query 18486 TTGGTTACGTCT 18497 |||||||||||| Sbjct 2913 TTGGTTACGTCT 2924 Score = 96.9 bits (106), Expect = 9e-16 Identities = 62/68 (91%), Gaps = 0/68 (0%) Strand=Plus/Plus Query 18798 ATCATCTCCATAAAATAAAACTCGCCGTAGCGAGTTCAGATAAAAGAAATCCCCGCGAAT 18857 ||||||||||||||| ||||| |||||||||||||||||||||||||||||| || | | Sbjct 3043 ATCATCTCCATAAAACAAAACCCGCCGTAGCGAGTTCAGATAAAAGAAATCCTCGTCAGT 3102 Query 18858 GCGAGGAT 18865 |||||||| Sbjct 3103 GCGAGGAT 3110 >seq3980 Length=16791 Score = 116 bits (128), Expect = 9e-22 Identities = 257/385 (67%), Gaps = 13/385 (3%) Strand=Plus/Minus Query 33754 TATCGAGAACTGTTCAGGGAGTCTGACATCAAGAGCGCGGTAGCCTTTTTTAATATTTCA 33813 ||||| |||| |||||| ||||| |||||||||||||||||||||||||||||||| | Sbjct 16382 TATCGTGAACCGTTCAGCGAGTCGGACATCAAGAGCGCGGTAGCCTTTTTTAATATCGTA 16323 Query 33814 TTCTCCATTTCAATGCGTTGTAGCT--TTTTCCTGAGCTCACGGATTTCAATTTGTTCCG 33871 |||| | || | ||| | | || |||||| ||||| ||||| || || | Sbjct 16322 TTCTGCTCCTCCAGGCGACGAACCTGCTTTTCC--AGCTCGCGGATACGTTGCTGGTCTG 16265 Query 33872 GGGTAATGGGGGAGGCTTTTGGTGTTTTGCCCTGACGCTCATCACGCAGTTGTTTGACCC 33931 | ||||| || | ||| || || | ||||| ||||| | || || |||| Sbjct 16264 GAGTAATAGGTGTGGCAGAGGGCGTAATCCCCTGGCGCTCTCGCCTGAGCTGGCGTACCC 16205 Query 33932 ATCTTGTCATTGTGGAAAGGCCAACATCCATAGCTTTGGCGGCATCTGCCACCGTGTATT 33991 | || | |||| | || |||| ||| |||| ||| | | | ||| Sbjct 16204 AGCTCTCAAGCGTGGTAGAACCGACATTCATCGCTTCACTGGCTTGTCGATAGGAGTAGC 16145 Query 33992 TCTGGTCAACAACCAGTTGAGCGGATTCGCGTTTAAACTCTGCGCTAAA---------AT 34042 || ||||||| ||| || || |||| | | ||||| | | | || | Sbjct 16144 CCTTATCAACAATCAGCTGTGCACATTCCAGCCTGAACTCGGGGGTGAAAGTACGCTTAG 16085 Query 34043 TTCtttttttCATTGGAGCACCTGTGTTGTTCTGAGGTGAGCATATCACCTCTGTTCAGG 34102 || | || |||||| ||||||| |||| ||||||||| ||||||||| | ||||| Sbjct 16084 TTTTCTTGTTCATTAAGTCACCTGTTTTGTGTTGAGGTGAGAATATCACCTTTAATCAGG 16025 Query 34103 TGGCCAAATTCAGTGTGCCACTTCA 34127 |||||||||| | ||||||||| || Sbjct 16024 TGGCCAAATTTACTGTGCCACTACA 16000 >seq7234 Length=2716 Score = 102 bits (112), Expect = 2e-17 Identities = 116/156 (74%), Gaps = 0/156 (0%) Strand=Plus/Plus Query 38324 ACTTTCTGCGTACTGGTGCTGAAGAATGGCTTCACCGTCACCGGAGAGAGTGCCTGTGCA 38383 || ||||| || ||||| ||| || || |||||||||||||| ||||| || || || Sbjct 403 ACCTTCTGTGTCCTGGTCCTGCGCAACGGTTTCACCGTCACCGGTGAGAGCGCATGCGCC 462 Query 38384 AGCCCGGAAAACTTTGATGCAGAAATTGGCCGGAAGATTGCCCGGCAAAATGCTGTAAAC 38443 || ||||| ||||| || || ||| | ||||| ||||||||||| || || || | | | Sbjct 463 AGTCCGGAGAACTTCGACGCCGAAGTGGGCCGCAAGATTGCCCGCCAGAACGCCGAACAG 522 Query 38444 AAAATCTGGATGCTCGAAGGTTACTTGCTGAAGCAG 38479 || |||||| ||| || ||| ||| |||||| Sbjct 523 AAGATCTGGCCGCTGATGGGCTACGCGCTCAAGCAG 558 >seq4417 Length=982 Score = 95.1 bits (104), Expect = 3e-15 Identities = 117/160 (73%), Gaps = 0/160 (0%) Strand=Plus/Minus Query 33040 GTAACCCACCACCGGCATCCATTCGTTCTTCAGACTCCTGAAGAAGCGTTCCATTGGGCT 33099 |||||| | | || ||||| || ||||| || | || | ||| ||||| || Sbjct 772 GTAACCAGTCGCTGGAATCCACTCTGATTTCAGGCTGCGAAACAGGCGCTCCATCGGCGA 713 Query 33100 GTTATCCCAGCAGTTTCCGCGCCGGCTCATACTCTGTCTGATCTGGTATCGCCACAATAA 33159 ||||||||||||||| || || || ||||| |||||| |||| |||| ||||| | Sbjct 712 GTTATCCCAGCAGTTCCCCCGGCGACTCATGCTCTGTTCGATCCGGTAACGCCATAGCCG 653 Query 33160 CTGCCGGAACTGCCTGCTCGTATAATGACTGCCCTGATCG 33199 |||||||||| | | ||| || || || |||||||||||| Sbjct 652 CTGCCGGAACAGGCGGCTGGTGTACTGGCTGCCCTGATCG 613 >seq76 Length=48202 Score = 95.1 bits (104), Expect = 3e-15 Identities = 154/219 (70%), Gaps = 2/219 (1%) Strand=Plus/Minus Query 21675 TAAACCTCAGAGCCTTTTCGCAGATATTCGCTGGCAATTTCTGCCAGTTTCCCGCTCATT 21734 || |||| | ||| || ||||||||||| | || | ||| || || || ||| || Sbjct 1559 TAGACCTGCGCGCCCTTGCGCAGATATTCACCAGCCACTTCCGCGAGCTTGCCGAACAGC 1500 Query 21735 ACCACGCGGTGCCACTCCGTCTGCTCCTTTTGCTCTCCAGTTTGCTTATCACGCCATTGT 21794 |||||||||||||| |||||||||||| ||| || || || || |||||||| | Sbjct 1499 ACCACGCGGTGCCATTCCGTCTGCTCCCGCATCTCCCCCGTCTGTTTGTCACGCCAGCTT 1440 Query 21795 TCTGACGTAGCAACTGTAAGGTTTGCAAATGCCGTTCCTGATGGTGA-ATATCTGATTTC 21853 ||||| || || || |||||||| | || || || | ||| || || | || ||| Sbjct 1439 TCTGATGTGGCCACCTGCAGGTTTGCCACTG-CGCCCCCGTTGGGGATGTAACGGACTTC 1381 Query 21854 TGGATCATGCCCAAGGCGACCAATAATGATCACCTTATT 21892 ||||||| || || || || | | ||| ||||| || Sbjct 1380 CGGATCATTGCCCAGACGCCCGACGAGGATGACCTTGTT 1342 >seq97 Length=44549 Score = 91.5 bits (100), Expect = 4e-14 Identities = 162/234 (69%), Gaps = 2/234 (1%) Strand=Plus/Minus Query 21666 CCTTCAAGATAAACCTCAGAGCCTTTTCGCAGATATTCGCTGGCAATTTCTGCCAGTTTC 21725 ||||| | || |||| | ||| || ||||||||||||| || | ||| || || || Sbjct 4948 CCTTCGATGTAGACCTGCGCGCCCTTGCGCAGATATTCGCCAGCCACTTCCGCGAGCTTG 4889 Query 21726 CCGCTCATTACCACGCGGTGCCACTCCGTCTGCTCCTTTTGCTCTCCAGTTTGCTTATCA 21785 ||| || |||||||| ||||| || ||||||||| ||| || || || || ||| Sbjct 4888 CCGAACAGCACCACGCGATGCCATTCTGTCTGCTCCCGCATCTCCCCTGTCTGTTTGTCA 4829 Query 21786 CGCCATTGTTCTGACGTAGCAACTGTAAGGTTTGCAAATGCCGTTCCTGATGGTGA-ATA 21844 ||||| ||| ||||| || || |||||||| | || || || | ||| || || Sbjct 4828 CGCCAGGTTTCCGACGTGGCGACCTGCAGGTTTGCCACTG-CGCCCCCGTTGGGGATGTA 4770 Query 21845 TCTGATTTCTGGATCATGCCCAAGGCGACCAATAATGATCACCTTATTTACGCC 21898 | || ||| ||||| | || ||||| || | | || ||||| || | ||| Sbjct 4769 ACGGACTTCCGGATCTTTTCCCAGGCGTCCTACGAGAATGACCTTGTTAATGCC 4716 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 124774162222870