Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acytostelium_20leptosomum_20[genbank_20GCA_5F900092245.1_202017-01- 02] 28,227 sequences; 57,256,845 total letters Query= NC_005839.2 Length=131680 Score E Sequences producing significant alignments: (Bits) Value seq1351 86.0 5e-12 >seq1351 Length=12664 Score = 86.0 bits (94), Expect = 5e-12 Identities = 146/210 (70%), Gaps = 2/210 (1%) Strand=Plus/Minus Query 48518 ACTAAATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCCAATTGT-CGCTCGTCCTC 48576 || || ||||| ||| |||||||||||||||||| ||| || | || || | ||||| Sbjct 4684 ACCAAGTGAAGGGTGGACTCCTTTTGAATGTTGTAGTCA-CCGAGGGTGCGTCCATCCTC 4626 Query 48577 CAGCTGCTTACCGCCGTAAATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCAT 48636 || ||||| ||| | | || ||||| ||||| || || | || ||||||||| Sbjct 4625 AAGTTGCTTGCCGGCAAAGATCAAACGTTGCTGGTCGGGTGGGATACCCTCCTTGTCCTG 4566 Query 48637 AATTTTCTGCTTGATAGACGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTTT 48696 || || ||||| | | ||||| |||| ||| ||||| || ||||| || Sbjct 4565 GATCTTGNNCTTGACGTTCTCGATGGTGTCGGATCCCTCGACCTCGAGGGTGATGGTCTT 4506 Query 48697 ACCGGTGAGAGTTTTCACAAAAATCTGCAT 48726 || ||||| || || || || |||||||| Sbjct 4505 GCCAGTGAGGGTCTTGACGAAGATCTGCAT 4476 Score = 86.0 bits (94), Expect = 5e-12 Identities = 158/229 (69%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 48499 ACCTCCGCGCAACCTTAACACTAAATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGC 48558 |||||| || | | | ||| || ||||| ||| |||||||||||||||||| ||| | Sbjct 4931 ACCTCCACGGAGACGGAGCACCAAGTGAAGGGTGGACTCCTTTTGAATGTTGTAGTCA-C 4873 Query 48559 CAATTGT-CGCTCGTCCTCCAGCTGCTTACCGCCGTAAATTAAACGCTGCTGATCCACCG 48617 | | || || | ||||| |||||||| ||| | | || | ||||||||| || | Sbjct 4872 CGAGGGTGCGTCCATCCTCAAGCTGCTTGCCGGCAAAGATGAGACGCTGCTGGTCGGGTG 4813 Query 48618 GCACACTTTCCTTGTCCATAATTTTCTGCTTGATAGACGCTATGGTATCGGTAGACTCCG 48677 | | || |||||||| || || ||||| | | ||||| |||| ||| Sbjct 4812 GAATACCCTCCTTGTCTTGGATCTTGGCCTTGACGTTCTCGATGGTGTCGGATCCCTCGA 4753 Query 48678 TCTCGACTGTTATGGTTTTACCGGTGAGAGTTTTCACAAAAATCTGCAT 48726 ||| | || ||||| || || || ||||| |||||||| || ||||| Sbjct 4752 CCTCCAGAGTGATGGTCTTTCCAGTTAGAGTCTTCACAAAGATTTGCAT 4704 Score = 86.0 bits (94), Expect = 5e-12 Identities = 158/229 (69%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 48499 ACCTCCGCGCAACCTTAACACTAAATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGC 48558 |||||| || | || || || || ||||| ||| ||||||||||||||| || || || Sbjct 5159 ACCTCCACGAAGTCTCAATACCAAGTGAAGGGTGGACTCCTTTTGAATGTTATAGTC-GC 5101 Query 48559 CAATTGT-CGCTCGTCCTCCAGCTGCTTACCGCCGTAAATTAAACGCTGCTGATCCACCG 48617 ||| || || | ||||| |||||||| ||| | | || | ||||||||| || | Sbjct 5100 CAAGAGTGCGACCATCCTCAAGCTGCTTGCCGGCAAAGATGAGACGCTGCTGGTCGGGTG 5041 Query 48618 GCACACTTTCCTTGTCCATAATTTTCTGCTTGATAGACGCTATGGTATCGGTAGACTCCG 48677 | | | |||||||| ||| || ||||| | | ||||| || | ||| Sbjct 5040 GGATTCCCTCCTTGTCTTGAATCTTGGCCTTGACGTTCTCGATGGTGTCAGAGCCCTCAA 4981 Query 48678 TCTCGACTGTTATGGTTTTACCGGTGAGAGTTTTCACAAAAATCTGCAT 48726 ||| | ||| ||||| || || ||||| || || || || |||||||| Sbjct 4980 CCTCAAGTGTGATGGTCTTGCCAGTGAGGGTCTTGACGAAGATCTGCAT 4932 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 421106282610227