Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acytostelium_20leptosomum_20[genbank_20GCA_5F900092245.1_202017-01- 02] 28,227 sequences; 57,256,845 total letters Query= NC_005841.1 Length=41391 Score E Sequences producing significant alignments: (Bits) Value seq1687 910 0.0 seq40 601 9e-168 seq501 93.3 1e-14 seq62 86.0 2e-12 >seq1687 Length=800 Score = 910 bits (1008), Expect = 0.0 Identities = 623/702 (89%), Gaps = 0/702 (0%) Strand=Plus/Plus Query 21482 GTGGCGGGGCTATTGCTATAGCATCTGTGTTAATCACTGGCCCCGGTGGTAACGATGGTC 21541 ||||||| || |||||||||||||| ||||||||||||||||| ||||||||||||||| Sbjct 18 GTGGCGGAGCAATTGCTATAGCATCAGTGTTAATCACTGGCCCAAGTGGTAACGATGGTC 77 Query 21542 TGGAAGGTGTCAGATACAAACCATATAAGGACGTAGTCGGTGTGTTGACTGTGTGTTATG 21601 ||||||||||||| |||| |||||| || || | || ||||| | |||||| ||| | | Sbjct 78 TGGAAGGTGTCAGCTACATACCATACAAAGATATTGTTGGTGTATGGACTGTATGTCACG 137 Query 21602 GCCACACCGGAAAAGACATCATGCCTGGTAAAACGTATACCGAAGCAGAATGCAAAGCCC 21661 | || || |||||||||||||||| ||||||||||||||| |||||||||||||||||| Sbjct 138 GGCATACAGGAAAAGACATCATGCTCGGTAAAACGTATACCAAAGCAGAATGCAAAGCCC 197 Query 21662 TCCTGAATAAAGACCTTATCACTGTCGCCAGACAAATTAACCCGTACATCAAAGTAGATA 21721 ||||||||||||||||| ||| |||||||||||||||||||||||||| ||||| |||| Sbjct 198 TCCTGAATAAAGACCTTGCCACGGTCGCCAGACAAATTAACCCGTACATAAAAGTTGATA 257 Query 21722 TACCGGAAACAACGCGCGGCGCTCTTTACTCGTTCGTTTACAATGTGGGCGCAGGCAATT 21781 ||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||| Sbjct 258 TACCGGAAACAACGCGCGGCGCTCTTTACTCGTTCGTTTACAACGTGGGCGCTGGCAATT 317 Query 21782 TCAGAACATCGACGCTTCTTCGCAAAATCAATCAGGGTGATATCAAAGGTGCATGTGATC 21841 |||||||||||||||||||||||||||| || ||||| ||||||||||| |||||||||| Sbjct 318 TCAGAACATCGACGCTTCTTCGCAAAATAAACCAGGGCGATATCAAAGGCGCATGTGATC 377 Query 21842 AGCTACGTCGCTGGACATACGCTGGCGGTAAGCAATGGAAAGGCCTGATGACTCGTCGTG 21901 ||||||||||||||||||| ||||||||||||||||||||||| || ||||||||||||| Sbjct 378 AGCTACGTCGCTGGACATATGCTGGCGGTAAGCAATGGAAAGGTCTCATGACTCGTCGTG 437 Query 21902 AGGTTGAGCGTGATGTCTGTTTGTGGGGTAAGCAATGAGCAGATTAACCTCGATTATCTC 21961 || |||||||||| |||||||||||||| |||||||| |||| ||||| |||||||||| Sbjct 438 AGATTGAGCGTGAAATCTGTTTGTGGGGTCAGCAATGAACAGAGTAACCGCGATTATCTC 497 Query 21962 CGCTCTGGTTATCTGCATCATCGTCTGCCTGTCATGGGCTGTTAATCATTATCGTGATAA 22021 ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| Sbjct 498 CGCTCTGGTTATCTGCATCATCGTCTGCCTGTCATGGGCTGTTAATCATTACCGTGATAA 557 Query 22022 CGCCATCACCTACAAAGTCCAGCGCGACACTGTTACTCAAAAGCTGGCGCTGGCGAACGC 22081 |||||| |||||||||| ||||||||||| | | | | ||| |||||||||||| Sbjct 558 CGCCATTACCTACAAAGCCCAGCGCGACAAAAATGCCAGAGAACTGAAGCTGGCGAACGC 617 Query 22082 GACAATTACCGATATGCAAACGCGCCAGCGTGATGTAGCAGAACTTGACGCCAGATACAC 22141 | ||||||| || ||||| | ||||||||||||||| || | ||| || | | |||||| Sbjct 618 GGCAATTACTGACATGCAGATGCGCCAGCGTGATGTTGCTGCACTGGATGAAAAATACAC 677 Query 22142 AAAGGAGCTTGCTGATGCGAAAGCTGAGAATGATGCTCTTCG 22183 |||||| | ||| ||||||||||||| ||||||||||| || Sbjct 678 GAAGGAGTTAGCTAATGCGAAAGCTGAAAATGATGCTCTGCG 719 >seq40 Length=14228 Score = 601 bits (666), Expect = 9e-168 Identities = 738/999 (74%), Gaps = 9/999 (1%) Strand=Plus/Plus Query 13483 GCTGGCTAACCGTGCTTCCTATAGGTCTGCGGCATGCTTCCAATTACCTTTCCAAAGACA 13542 |||| || ||||| |||||||| ||||||||||| || ||||| ||||| || || | Sbjct 8442 GCTGATTATCCGTGTTTCCTATACGTCTGCGGCATACTGCCAATAACCTTCCCGAAAATG 8501 Query 13543 AAAACCCTATTCATTTCATCTCTTTCAATTGGGTCCCAAGCTGAATAACTCTTATTATCA 13602 || |||| ||||| || ||| | || || |||||||| | ||| || ||||| |||||| Sbjct 8502 AACACCCGGTTCATCTCGTCTTTCTCGATCGGGTCCCACGGTGAGTAGCTCTTGTTATCA 8561 Query 13603 GATATGACCAATAGTTTATCTTTCATCTTCTGGAGCCGCTTAACATGTGCAGTATCGTCA 13662 || || |||| ||| |||||||||||| | || || ||||| ||||| || || ||||| Sbjct 8562 GAGATAACCAGTAGCTTATCTTTCATCATTTGCAGGCGCTTTACATGGGCTGTGTCGTCG 8621 Query 13663 TAGAGGAAGGCGTATATCCCATCCCCATCGAAGTTTTTGATGCTTACGTCTACAAACAAC 13722 || || || || || || ||||| || ||||| ||| | | | || || |||| | Sbjct 8622 TACAGAAACGCATAGATACCATCACCGTCGAAAGATTTAACCGTGATATCAACGAACAGC 8681 Query 13723 AGATCTCCTGGTTCAATAGTTCCTGACATGCTATCTCCGCGCACATTTATGATGCGGATA 13782 ||||| |||||||| || |||||||||||||| || |||||||| || |||||||||||| Sbjct 8682 AGATCACCTGGTTCGATCGTTCCTGACATGCTGTCACCGCGCACGTTAATGATGCGGATA 8741 Query 13783 TTTTCAGCCTTTCTACCATCGAACATGTGTCTGGCATCGTCCTGCGAATACTCAACCGAG 13842 ||||| ||||| || |||||||||||||| | |||||||| ||| |||||||||||| Sbjct 8742 TTTTCCGCCTTCCTGCCATCGAACATGTGACGAGCATCGTCAAACGAGTACTCAACCGAG 8801 Query 13843 CGGAGTATTTCCACGAATTCTCGATTGATAACGCCAGGACCCGCGCTAACTTCAAGATCT 13902 || || | |||||| || || || ||||| || || || || || || ||||| | ||| Sbjct 8802 CGTAGAACTTCCACAAACTCACGGTTGATGACACCCGGTCCGGCACTGACTTCTATATCA 8861 Query 13903 AGGATATCGATTTTAAATGTGTTTGAA--GATG-GAGATGCGTTTATCGGAGTAGTT--C 13957 || | || || || || |||||| | || || | | || | || | ||| | Sbjct 8862 AGAACGTCAATCTTGAAGTATTTTGAATGGCTGACAGCAG-GCTTCCCTGA-TTGTTGAC 8919 Query 13958 CATCTTTTTTCATAGGACCAATTCCGGTAGACAACCATTCCGAATTAACACCTAACGCGT 14017 | || ||| |||| || || || || | || | |||||| | |||||| || || | Sbjct 8920 CGTCATTTCTCATCGGGCCTATGCCTGATGAGAGCCATTCTGTTCGAACACCCAATGCAT 8979 Query 14018 TTGCTATTTCAACAATCTTTGTTGACCCACGAGCGTTTCCACTTGTCAAACGCCAGATCG 14077 | |||||||||||||| |||||||| || || ||||| || ||||||| | |||||| | Sbjct 8980 TAGCTATTTCAACAATTTTTGTTGAGCCGCGCGCGTTGCCGCTTGTCAGTCTCCAGATTG 9039 Query 14078 TTGGCTGAGCAACGCCTGACGCTTTAGCGAGAGCACCTTGAGACATACCAGCCAGTTCCA 14137 | || ||||| ||||| ||||| || || ||||| ||||||||||| |||| |||||| Sbjct 9040 TGGGTTGAGCTACGCCAGACGCCTTTGCAAGAGCGCCTTGAGACATTCCAGATTGTTCCA 9099 Query 14138 TTGCCTTGTTGAGACGGTCAGAGAGAGTTTCTTTTTTCATAATATTCAATTTATACGCTT 14197 | || ||| | || |||| ||||||||||||||||||| || ||||||||||||| Sbjct 9100 TCGCTAGGTTTAAGCGATCAGCAAGAGTTTCTTTTTTCATAAGTTTTAATTTATACGCTT 9159 Query 14198 GCGTATTAATGGTCAAAACACGTTTTGCTATTGCTTTGATTAATACTCATTGCTATTATT 14257 ||||||| |||||||||||||||||||||||||||| | ||||||| ||||||||||||| Sbjct 9160 GCGTATTGATGGTCAAAACACGTTTTGCTATTGCTTGGGTTAATACGCATTGCTATTATT 9219 Query 14258 TGTTGTGTGTTATACGAAAGGGAATAAGCAATGACTAACAAAGCAATACAAAAAGCTGTT 14317 || || |||| || ||||| |||||| || || | || ||| || | Sbjct 9220 CATTCATTGCAATACCAATAGGAATTGATAATGACAAATCAAACCATTCAACTCGCAATC 9279 Query 14318 GCCATTGCAGGAAGCCAGCAAAAACTCGCCTCTTTGTGTGGAGTTAAGCAGCCAACTGTA 14377 ||| |||| || || || ||| || | | || || || || || || || Sbjct 9280 AGTATTACAGGTAGTCAAAAACGACTGGCAGATCTATGCGGTGTAGCCCAACCCACAGTT 9339 Query 14378 TGGCGTTGGTTACATGGTGGCGGCATTGACGCTAAGTATGTGGCAGCAATCGTAAAAGCT 14437 ||||||||| |||| |||||||| ||||| || ||||| ||| || ||| Sbjct 9340 TGGCGTTGGCTACACGGTGGCGGAATTGATGCCCGCTATGTAATGAAAATTGTCTCAGCC 9399 Query 14438 ACAGGAGGAAGAATTAAAGCCAG-AGAACTTCGTCCTGA 14475 || || |||| |||||| |||| ||| ||||||| || Sbjct 9400 ACTGGTGGAAAGATTAAA-CCAGCAGATATTCGTCCCGA 9437 Score = 102 bits (112), Expect = 2e-17 Identities = 78/90 (87%), Gaps = 2/90 (2%) Strand=Plus/Plus Query 4641 CTCCATAAAACAAAACTCGCCGTAGCGAGCTCAGATAAAAGAAATCCCCGCGAGTGCGAG 4700 |||||||||||||||| |||||||||||| ||||||||||||||||| || |||||||| Sbjct 3048 CTCCATAAAACAAAACCCGCCGTAGCGAGTTCAGATAAAAGAAATCCTCGTCAGTGCGAG 3107 Query 4701 GATTGTTATTCATTGCCGATATTCATCTTT 4730 || || | |||||||| | ||| || |||| Sbjct 3108 GA-TGCTGTTCATTGCTGCTATACA-CTTT 3135 >seq501 Length=12468 Score = 93.3 bits (102), Expect = 1e-14 Identities = 97/128 (76%), Gaps = 11/128 (9%) Strand=Plus/Minus Query 3125 CTTATTTTTACT-GTGGGACATATTTGGGACAG----------AAGTACCAAAAATCGAG 3173 || |||||| || ||||||||||||||||||| || | ||||||| ||| Sbjct 10997 CTGATTTTTCCTTGTGGGACATATTTGGGACATCTTCTGCAAAAATTTGCAAAAATTGAG 10938 Query 3174 TCAATTTGTCGAGCATGTTCAGTCAGGTGATTTGGTGCCAGATGAGCATATCTGCGAACC 3233 |||||||| || || || ||||| | || || |||||||| |||||||||| || ||| Sbjct 10937 TCAATTTGACGTGCGTGCTCAGTTAAATGGTTAGGTGCCAGGTGAGCATATCGACGGACC 10878 Query 3234 ATTTCGAT 3241 |||||||| Sbjct 10877 ATTTCGAT 10870 >seq62 Length=1393 Score = 86.0 bits (94), Expect = 2e-12 Identities = 50/52 (96%), Gaps = 0/52 (0%) Strand=Plus/Plus Query 3044 ATTCGTAATGCGAAGGTCGTAGGTTCGACTCCTATTATCGGCACCAGTTAAA 3095 |||||||||||||||||||||||||||||||||||||||||||||| || || Sbjct 25 ATTCGTAATGCGAAGGTCGTAGGTTCGACTCCTATTATCGGCACCATTTCAA 76 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 132285243697022