Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acytostelium_20leptosomum_20[genbank_20GCA_5F900092245.1_202017-01- 02] 28,227 sequences; 57,256,845 total letters Query= NC_005882.1 Length=36748 Score E Sequences producing significant alignments: (Bits) Value seq13915 107 5e-19 seq8769 107 5e-19 seq17194 104 5e-18 >seq13915 Length=671 Score = 107 bits (118), Expect = 5e-19 Identities = 139/192 (72%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 14695 CGCCCGTCCAACCTGCGCGGCAAGCAAGGCCGCGTGATCATCGACGAGGCAGCGTTCCAC 14754 || |||||||||||||||||| || ||| || | |||||||| || |||||||| Sbjct 181 CGTCCGTCCAACCTGCGCGGCCGTCAGGGCGTTGTCGTGATCGACGAAGCCGCGTTCCAT 240 Query 14755 GAGCAGCTCGGCGAGCTGCTCAAGGCCGCGATGGCGCTGCTGATGTGGGGCGGTCAGGTT 14814 | | | | | ||||||||| || || || ||||| ||| |||| ||||||||| | || Sbjct 241 GCGGACTTGGCCGAGCTGCTGAAAGCGGCCATGGCTCTGTTGATCTGGGGCGGTGAAGTC 300 Query 14815 CACATCATTTCGACGCACGACGGCGTCGACAACGCGTTCAATGAGCTGGTCACGGACGTC 14874 || | || || ||||||||| || ||||| || || || ||||||| || || Sbjct 301 CATGTGATCAGCACCCACGACGGCACGGAGAACGCCTTTAACGACCTGGTCAACGAAATC 360 Query 14875 CGTTCCGGCAAG 14886 || | |||||| Sbjct 361 CGGGCTGGCAAG 372 >seq8769 Length=1584 Score = 107 bits (118), Expect = 5e-19 Identities = 288/436 (66%), Gaps = 27/436 (6%) Strand=Plus/Plus Query 13338 TGCAGTACGTGCGCCGCGAAGACTACGTGCGCAACCAGACCGTCATCGAAGCCAAGCTCG 13397 |||| ||||||||||| ||||||||||||||| ||| ||||| ||||| |||||||| | Sbjct 1163 TGCACTACGTGCGCCGGGAAGACTACGTGCGCGGCCAAACCGTGATCGAGGCCAAGCTTG 1222 Query 13398 ACGCGATCGCGCTCAGATTCGAAAACTTACAACTCCGGGGAAATCAATGACGCCCACCAA 13457 | ||| | || |||| | |||| | | ||| | ||| | ||| | || Sbjct 1223 ATGCGTTGGCCCTCAAGCTAGAAACCGTTCAATT-----AAAAGGACTGA-----AGTAA 1272 Query 13458 TCCGCTGGGAATCGACCACGCCAAGGTGCGCCGCGAATCGCTGCGCTGGTATCTGATTCT 13517 || |||||| |||||| |||||| ||||| ||||||||||| | || Sbjct 1273 -----TGAACATCGACGCCGCCAAAACGCGCCGGGAATCCCTGCGCTGGTACATCATCAA 1327 Query 13518 GGCGCTGTACAACGCGCGGCCCGAGGAAGTCGTCGAGGACGTGATCCAGATG---ACGAT 13574 | | ||| ||| | |||| |||| || || || | || | ||| | || || || Sbjct 1328 GACCCTGGACACCTCGCGCCCCGTAGA--TCCTC-ATGAGGCTATCGTGTTGTCCACCAT 1384 Query 13575 GCGCTCGATCTTCGCCGACATCACGGCGCTTGAGGTGCGCAAGGAACTGGACTACCTCGC 13634 | |||| ||||| ||| | | ||| ||||| ||||| |||||||| || Sbjct 1385 CCAGGGCATCTATCCCGACGCCACCACCATGGAGCTGCGCCGCGAACTCGACTACCTGGC 1444 Query 13635 CGATCGCGTGCTGGTGAAGCTGCGCAAGGAACCGTCCGGCCGCTGG---TGGGGCGATCT 13691 ||| || ||||||| ||| ||| | || ||| ||| || ||| || Sbjct 1445 CGACCGTAGCCTGGTGACGCTAGACAAAAAGCCCAACGGTGTGTGGATCTGTGGC---CT 1501 Query 13692 CACGCGCTACGGCGTCGACATCGCCGAGTACACGATCGATTGCGAGCCGGGCATCGCGCG 13751 || | |||||| |||||||| || || ||||| |||| ||| | || ||| | || || Sbjct 1502 GACCCACTACGGGGTCGACATTGCGGAATACACCATCGCCTGCAAACCAGGCGTTGCCCG 1561 Query 13752 GCCGGCCAAGTACTGG 13767 || | ||||||||| Sbjct 1562 ACCAGAAAAGTACTGG 1577 >seq17194 Length=1719 Score = 104 bits (114), Expect = 5e-18 Identities = 129/174 (74%), Gaps = 2/174 (1%) Strand=Plus/Plus Query 1960 CGTATTGGTCCGTGTCGCCGACGCGCTCGTAGACGCGGACGTACGACTTGCTACCGATCA 2019 |||| ||||| || || || || |||| || ||||||| ||| |||||| || | || Sbjct 1515 CGTACTGGTCGGTATCACCAACACGCTGATACACGCGGATGTAGGACTTGGAGCCAACCA 1574 Query 2020 CCTG-CAGTGCTTCGCCGATGGCTCGCATTGCCTCCAGCCAGCGCGGATCGGTGATGTCC 2078 |||| ||| || |||||||||||| |||| || | ||||||| |||||| || ||| Sbjct 1575 CCTGGCAG-GCGTCGCCGATGGCTTGCATGGCGCGCTGCCAGCGTTCATCGGTAATTTCC 1633 Query 2079 AATCGGCGCAGCGCGAGCACGCGGCCGGTGTTGATCTGGCCTTCCTTGTCGGTC 2132 | ||||||| ||| || |||||| | ||| ||| | ||||| | ||| ||| Sbjct 1634 ATACGGCGCAACGCCAGGACGCGGGCTGTGCGGATGTCGCCTTTTTGGTCAGTC 1687 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 117432623899540