Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acytostelium_20leptosomum_20[genbank_20GCA_5F900092245.1_202017-01- 02] 28,227 sequences; 57,256,845 total letters Query= NC_006548.1 Length=38439 Score E Sequences producing significant alignments: (Bits) Value seq17194 131 4e-26 seq8769 131 4e-26 >seq17194 Length=1719 Score = 131 bits (144), Expect = 4e-26 Identities = 170/235 (72%), Gaps = 0/235 (0%) Strand=Plus/Plus Query 2576 CCATGTCACACCCCCGCGATATCAAGAGGAATGGAGCGGTACTGGTCGGTGTCCCCGACC 2635 ||||||||||||||||| |||||||| |||| |||||||||||| || || || Sbjct 1478 CCATGTCACACCCCCGCAATATCAAGGCTGATGGGCTCGTACTGGTCGGTATCACCAACA 1537 Query 2636 CGCTCCTGGATACGCACGTACGCCTTGGTGCTCACGACCTGGACAGCCTCGCCGATGGCC 2695 |||| | | || | ||| | ||||| || || |||||| || ||||||||||| Sbjct 1538 CGCTGATACACGCGGATGTAGGACTTGGAGCCAACCACCTGGCAGGCGTCGCCGATGGCT 1597 Query 2696 TGCATTGCACGCTGCCAACGTTCGTCATCGATCTGCAGGCGGCGCAGGGCAAGCACGCTG 2755 ||||| || |||||||| ||||| || || | || ||||||| || || |||| | Sbjct 1598 TGCATGGCGCGCTGCCAGCGTTCATCGGTAATTTCCATACGGCGCAACGCCAGGACGCGG 1657 Query 2756 CCGGTACGGATGTTCCCAGCTTGGTCCACGCGGAACGCATCGTTGATCAGCGTGA 2810 | || ||||||| || |||||| ||||| ||||| || | |||||||| Sbjct 1658 GCTGTGCGGATGTCGCCTTTTTGGTCAGTCCGGAAGGCATCATTTACCAGCGTGA 1712 >seq8769 Length=1584 Score = 131 bits (144), Expect = 4e-26 Identities = 288/433 (67%), Gaps = 8/433 (2%) Strand=Plus/Plus Query 13779 TGCCGATCCAGTACGTCCGCCGCGAGGACTATATCCGCGGCCAGAGCGTGATCGAGGCGA 13838 |||| | || ||||| ||||| || ||||| | |||||||| | |||||||||||| | Sbjct 1157 TGCCCGTGCACTACGTGCGCCGGGAAGACTACGTGCGCGGCCAAACCGTGATCGAGGCCA 1216 Query 13839 AGCTCGACGGTTTGGCCGTGAAGCTGGAAAACGCGCAGCTGCGCAGTCTGATGGGAGCAA 13898 |||| || | |||||| | ||||| |||| || || | | |||| | Sbjct 1217 AGCTTGATGCGTTGGCCCTCAAGCTAGAAACCGTTCAATTAAAAGGACTGAAGT------ 1270 Query 13899 AAAATGCAAATTGACCTGGCCAAGACCCGGCGCGAAGCCCTGCGCTGGCTGATTCTACTG 13958 |||| | || ||| ||||| || || || ||| ||||||||||| || | | Sbjct 1271 --AATGAACATCGACGCCGCCAAAACGCGCCGGGAATCCCTGCGCTGGTACATCATCAAG 1328 Query 13959 ACCCTGAACAATGCTCGGCCGGTGGGCGCCTACGAGGGGCCGGTCCTCTCGGTCGCACAG 14018 |||||| ||| | || || || | | | |||| || | || | ||| Sbjct 1329 ACCCTGGACACCTCGCGCCCCGTAGATCCTCATGAGGCTATCGTGTTGTCCACCATCCAG 1388 Query 14019 AGCGAGTACCCCGACGCCACACCGCTGGAGATCCGCCGCGAGCTGGACTACTTGGCCGAC 14078 || || ||||||||||| | ||||| | |||||||| || |||||| |||||||| Sbjct 1389 GGCATCTATCCCGACGCCACCACCATGGAGCTGCGCCGCGAACTCGACTACCTGGCCGAC 1448 Query 14079 CGTGACCTGGTGACCTTGGTCAAGGAACCATCCGGCAAGTGGTTCGCCGATTTGACCCGG 14138 ||| ||||||||| | | ||| | || ||| |||| || | |||||| Sbjct 1449 CGTAGCCTGGTGACGCTAGACAAAAAGCCCAACGGTGTGTGGATCTGTGGCCTGACCCAC 1508 Query 14139 TATGGCACTGACGTCGCCGAGTACACCATCGACTGCGAACCCGGCATCGCTCGCCCCAAG 14198 || || ||| | || || |||||||||| |||| |||| ||| | || || || | Sbjct 1509 TACGGGGTCGACATTGCGGAATACACCATCGCCTGCAAACCAGGCGTTGCCCGACCAGAA 1568 Query 14199 AAGTACTGGTGAC 14211 ||||||||||||| Sbjct 1569 AAGTACTGGTGAC 1581 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 122842010088974