Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acytostelium_20leptosomum_20[genbank_20GCA_5F900092245.1_202017-01- 02] 28,227 sequences; 57,256,845 total letters Query= NC_006549.1 Length=140131 Score E Sequences producing significant alignments: (Bits) Value seq8653 141 8e-29 seq1351 125 6e-24 seq3381 120 3e-22 seq4240 104 2e-17 seq3382 93.3 4e-14 seq6863 89.7 5e-13 >seq8653 Length=1535 Score = 141 bits (156), Expect = 8e-29 Identities = 170/231 (74%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 94777 CACTCCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATC 94836 || |||||| | | |||| ||||||||| | ||||| ||||| || | ||| || || Sbjct 190 CATTCCTCCACGGAGACGCAGCACCAAGTGGAGGGTAGACTCCTTCTGAATGTTGTAGTC 249 Query 94837 GCTCATAGTGTTGGAATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGG 94896 || | |||| || || || || || ||| ||||||| || | ||| ||||| || Sbjct 250 GCCGAGAGTGCGACCGTCTTCAAGTTGCTTGCCGGCAAAGATCAAACGTTGTTGATCGGG 309 Query 94897 AGGAATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTC 94956 || |||||||||||||| | ||| |||||||||||| ||| |||||||| | || Sbjct 310 TGGGATACCTTCTTTGTCTTGAATCTTTGCCTTGACGTTCTCGATAGTGTCAGAGCCCTC 369 Query 94957 GACGTCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 ||| || | |||||||| |||||||| | || || |||||||| ||||| Sbjct 370 GACCTCTAGTGTGATGGTCTTTCCAGTCAATGTCTTTACAAAGATTTGCAT 420 Score = 102 bits (112), Expect = 7e-17 Identities = 116/156 (74%), Gaps = 0/156 (0%) Strand=Plus/Plus Query 94852 ATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTT 94911 |||||| ||||| || ||| ||||||| | | |||||||| || || || || || || Sbjct 37 ATCCTCGAGCTGCTTGCCGGCAAAGATGAGACGCTGCTGATCGGGTGGGATTCCCTCCTT 96 Query 94912 GTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGAT 94971 || | || || ||||||||| ||| |||||||| | || || || | ||||| Sbjct 97 ATCTTGGATCTTGGCCTTGACGTTCTCGATAGTGTCAGAGCCCTCAACCTCGAGGGTGAT 156 Query 94972 GGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 || || ||||| ||||| ||||||||||||||||| Sbjct 157 AGTCTTGCCAGTGAGAGTCTTCACAAAGATCTGCAT 192 >seq1351 Length=12664 Score = 125 bits (138), Expect = 6e-24 Identities = 164/227 (72%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 94781 CCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTC 94840 ||||| | | || ||| |||||||| | || || |||||||| | |||||| |||| Sbjct 5158 CCTCCACGAAGTCTCAATACCAAGTGAAGGGTGGACTCCTTTTGAATGTTATAGTCGCCA 5099 Query 94841 ATAGTGTTGGAATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGA 94900 | |||| |||||| ||||| || ||| ||||||| | | ||||| || || || Sbjct 5098 AGAGTGCGACCATCCTCAAGCTGCTTGCCGGCAAAGATGAGACGCTGCTGGTCGGGTGGG 5039 Query 94901 ATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACG 94960 || || || ||||| | ||| || ||||||||| ||| ||||||| | || || Sbjct 5038 ATTCCCTCCTTGTCTTGAATCTTGGCCTTGACGTTCTCGATGGTGTCAGAGCCCTCAACC 4979 Query 94961 TCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 |||| |||||||| || ||||| || || || || ||||||||||| Sbjct 4978 TCAAGTGTGATGGTCTTGCCAGTGAGGGTCTTGACGAAGATCTGCAT 4932 Score = 118 bits (130), Expect = 1e-21 Identities = 152/210 (72%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 94798 CACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGAATCCTC 94857 ||||||||| | || || |||||||| | ||| || || | | ||| |||||| Sbjct 4913 CACCAAGTGAAGGGTGGACTCCTTTTGAATGTTGTAGTCACCGAGGGTGCGTCCATCCTC 4854 Query 94858 CAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCATA 94917 ||||| || ||| ||||||| | | ||||| || || |||||||| || ||||| | Sbjct 4853 AAGCTGCTTGCCGGCAAAGATGAGACGCTGCTGGTCGGGTGGAATACCCTCCTTGTCTTG 4794 Query 94918 AATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATGGTTTT 94977 || || ||||||||| ||| ||||| | ||||| || | |||||||| || Sbjct 4793 GATCTTGGCCTTGACGTTCTCGATGGTGTCGGATCCCTCGACCTCCAGAGTGATGGTCTT 4734 Query 94978 TCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 |||||| ||||| ||||||||||| ||||| Sbjct 4733 TCCAGTTAGAGTCTTCACAAAGATTTGCAT 4704 Score = 95.1 bits (104), Expect = 1e-14 Identities = 146/209 (70%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 94799 ACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGAATCCTCC 94858 |||||||| | || || |||||||| | ||| || || | | ||| |||||| Sbjct 4684 ACCAAGTGAAGGGTGGACTCCTTTTGAATGTTGTAGTCACCGAGGGTGCGTCCATCCTCA 4625 Query 94859 AGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCATAA 94918 || || || ||| ||||||| || | |||||| || || || ||||| || ||||| | Sbjct 4624 AGTTGCTTGCCGGCAAAGATCAAACGTTGCTGGTCGGGTGGGATACCCTCCTTGTCCTGG 4565 Query 94919 ATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATGGTTTTT 94978 || || ||||||| ||| ||||| | ||||| || | |||||||| || Sbjct 4564 ATCTTGNNCTTGACGTTCTCGATGGTGTCGGATCCCTCGACCTCGAGGGTGATGGTCTTG 4505 Query 94979 CCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 ||||| || || || || ||||||||||| Sbjct 4504 CCAGTGAGGGTCTTGACGAAGATCTGCAT 4476 >seq3381 Length=12314 Score = 120 bits (132), Expect = 3e-22 Identities = 152/209 (73%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 94799 ACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGAATCCTCC 94858 |||||||| | ||||||||||||||| | ||| || |||| | |||| | |||||| Sbjct 1623 ACCAAGTGGAGAGTAGATTCCTTTTGGATGTTGTAGTCGCCAAGAGTGCGGCCATCCTCG 1564 Query 94859 AGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCATAA 94918 ||||| || || ||||||| || | ||||| || || || ||||| || || || | Sbjct 1563 AGCTGCTTGCCAGCAAAGATCAAACGCTGCTGGTCGGGTGGGATACCCTCCTTATCTTGG 1504 Query 94919 ATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATGGTTTTT 94978 || |||||||| ||| | | || |||| | || || || | ||||| || || Sbjct 1503 ATCTTTGCCTTTACGTTCTCAATGGTATCAGAGCCTTCAACCTCGAGAGTGATAGTCTTA 1444 Query 94979 CCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 ||||||||||| || || ||||||||||| Sbjct 1443 CCAGTAAGAGTCTTGACGAAGATCTGCAT 1415 Score = 114 bits (126), Expect = 1e-20 Identities = 154/211 (73%), Gaps = 4/211 (2%) Strand=Plus/Minus Query 94799 ACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGA--ATCCT 94856 |||||||| | ||||||||||||||| | ||| || |||| || || || || ||||| Sbjct 1395 ACCAAGTGGAGAGTAGATTCCTTTTGAATGTTGTAGTCGC-CA-AGAGTACGACCATCCT 1338 Query 94857 CCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCAT 94916 | || || || ||| ||||||| | | ||||||||| || || ||||| || || || | Sbjct 1337 CGAGTTGCTTGCCGGCAAAGATGAGACGTTGCTGATCGGGTGGGATACCCTCCTTATCTT 1278 Query 94917 AAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATGGTTT 94976 || || ||||||||| ||| ||| || | || || || | ||||| || | Sbjct 1277 GGATCTTGGCCTTGACGTTCTCGATAGTATCCGAACCCTCAACCTCGAGGGTGATAGTCT 1218 Query 94977 TTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 |||| || | ||| ||||||||||| ||||| Sbjct 1217 TTCCGGTCAAAGTCTTCACAAAGATTTGCAT 1187 Score = 87.8 bits (96), Expect = 2e-12 Identities = 113/156 (72%), Gaps = 0/156 (0%) Strand=Plus/Minus Query 94852 ATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTT 94911 ||| |||| || ||||| |||| || | | ||||| || || ||||||||||| || Sbjct 1114 ATCTTCCAATTGCTTTCCAGCAAAAATGAGACGCTGCTGGTCGGGTGGAATACCTTCCTT 1055 Query 94912 GTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGAT 94971 ||| | ||| || |||||||| | | ||||| | | || || |||| ||||| Sbjct 1054 GTCTTGAATCTTAGCCTTGACATTCTCAATGGTGTCCGAGCCCTCAACCTCAAGAGTGAT 995 Query 94972 GGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 || || ||||| ||||| || |||||||||||||| Sbjct 994 CGTCTTGCCAGTGAGAGTCTTGACAAAGATCTGCAT 959 >seq4240 Length=2116 Score = 104 bits (114), Expect = 2e-17 Identities = 116/155 (75%), Gaps = 0/155 (0%) Strand=Plus/Minus Query 94853 TCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTG 94912 ||||| ||||| |||||| ||||||| | | ||||| || || || || || || ||| Sbjct 1597 TCCTCGAGCTGCTTTCCGGCAAAGATGAGACGCTGCTGGTCGGGTGGGATTCCCTCCTTG 1538 Query 94913 TCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATG 94972 || | || || ||||||||| ||| ||||||| | ||||| |||| |||||| Sbjct 1537 TCCTGGATCTTGGCCTTGACGTTCTCGATGGTGTCAGAGCCTTCGACCTCAAGGGTGATG 1478 Query 94973 GTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 || |||||||| | ||| || || ||||||||||| Sbjct 1477 GTCTTTCCAGTCAAAGTCTTGACGAAGATCTGCAT 1443 >seq3382 Length=4522 Score = 93.3 bits (102), Expect = 4e-14 Identities = 114/156 (73%), Gaps = 0/156 (0%) Strand=Plus/Minus Query 94852 ATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTT 94911 |||||||| ||| |||||| ||||||| | | |||||| || || ||||| || || || Sbjct 4336 ATCCTCCAACTGCTTTCCGGCAAAGATGAGACGTTGCTGGTCGGGTGGAATTCCCTCCTT 4277 Query 94912 GTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGAT 94971 ||| | || || ||||||||| | | ||||| | ||||| || | ||||| Sbjct 4276 GTCCTGGATCTTGGCCTTGACGTTTTCAATGGTGTCGGATCCCTCGACCTCGAGGGTGAT 4217 Query 94972 GGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 ||| || ||||| || || || || ||||||||||| Sbjct 4216 GGTCTTGCCAGTGAGGGTCTTGACGAAGATCTGCAT 4181 >seq6863 Length=4430 Score = 89.7 bits (98), Expect = 5e-13 Identities = 100/134 (75%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 94775 TACACTCCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAA 94834 |||| || |||||||| || | |||| || | ||| ||| |||| || | ||| ||| Sbjct 1319 TACATGCCACCTCTCAAACGTAGAACCAGATGAAGAGTCGATCCCTTCTGGATGTTGTAA 1378 Query 94835 TCGCTCATAGTGTTGGAATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCT 94894 ||| ||| ||| |||||||||||||||||| ||||||| | |||||| ||||| Sbjct 1379 TCGTCCATTGTGCGATCATCCTCCAGCTGTTTTCCAGCAAAGATCAGTCTTTGTTGATCC 1438 Query 94895 GGAGGAATACCTTC 94908 | || |||||||| Sbjct 1439 TGTGGGATACCTTC 1452 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 448133026053720