Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acytostelium_20leptosomum_20[genbank_20GCA_5F900092245.1_202017-01- 02] 28,227 sequences; 57,256,845 total letters Query= NC_006820.1 Length=196280 Score E Sequences producing significant alignments: (Bits) Value seq19411 93.3 5e-14 seq1796 86.0 8e-12 seq12517 84.2 3e-11 >seq19411 Length=388 Score = 93.3 bits (102), Expect = 5e-14 Identities = 68/78 (87%), Gaps = 1/78 (1%) Strand=Plus/Plus Query 164729 TCACGGGGAATTAGCTCAGTTGGTAGTAGCGTTTGCTTTGCAAGCAAAATGTCAGGAGTT 164788 |||||||| |||||||||||||||| |||| ||||||||||||| |||||||||||| Sbjct 36 TCACGGGGCCTTAGCTCAGTTGGTAG-AGCGCCTGCTTTGCAAGCAGGATGTCAGGAGTT 94 Query 164789 CGAGTCTCCTATTCTCCA 164806 ||| ||||||| ||||| Sbjct 95 CGAATCTCCTAGGCTCCA 112 >seq1796 Length=2160 Score = 86.0 bits (94), Expect = 8e-12 Identities = 62/72 (86%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 164824 CGCGGGATGGAACAGTCTGGTAGTTCAGCGGTCTCATAAGCCGCAGGTCGTGGGTTCAAA 164883 ||||||||||| ||||||||||| || ||| ||||||| ||| ||||||| |||||||| Sbjct 873 CGCGGGATGGAGCAGTCTGGTAGCTCGTCGGGCTCATAACCCGAAGGTCGTCGGTTCAAA 814 Query 164884 TCCCACTCCCGC 164895 ||| ||||||| Sbjct 813 TCCGGCTCCCGC 802 >seq12517 Length=681 Score = 84.2 bits (92), Expect = 3e-11 Identities = 63/74 (85%), Gaps = 0/74 (0%) Strand=Plus/Minus Query 120240 CGGGGTGTAGCTCAGTTTGGTAGAGCACTCGCTTTGGGAGCGAGTGGCCGTAGGTTCGAA 120299 ||||| |||||||||||||||||||| | ||||||||||||| | || || |||||| | Sbjct 135 CGGGGCGTAGCTCAGTTTGGTAGAGCGCCCGCTTTGGGAGCGGGAGGTCGCAGGTTCAAC 76 Query 120300 TCCTATCACCCCGA 120313 |||| || |||||| Sbjct 75 TCCTGTCGCCCCGA 62 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 627746429340800