Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acytostelium_20leptosomum_20[genbank_20GCA_5F900092245.1_202017-01- 02] 28,227 sequences; 57,256,845 total letters Query= NC_006949.1 Length=46900 Score E Sequences producing significant alignments: (Bits) Value seq1687 230 7e-56 seq360 149 2e-31 seq3840 116 1e-21 seq501 93.3 1e-14 seq62 86.0 2e-12 >seq1687 Length=800 Score = 230 bits (254), Expect = 7e-56 Identities = 187/224 (83%), Gaps = 2/224 (1%) Strand=Plus/Plus Query 45141 TTATCTGCATCATCGTCTGCCTGTCATGGGCTGTTAATCATTACCGTGATAACGCCATCG 45200 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 506 TTATCTGCATCATCGTCTGCCTGTCATGGGCTGTTAATCATTACCGTGATAACGCCATTA 565 Query 45201 CCTACAAAGAGCAGCGCGATACCGTTACTCATA-AGCTGACGCTGGCGAACGCGACAATT 45259 ||||||||| |||||||| | | | || | | |||| ||||||||||||| ||||| Sbjct 566 CCTACAAAGCCCAGCGCGACAAAAATGC-CAGAGAACTGAAGCTGGCGAACGCGGCAATT 624 Query 45260 ACCGACATGACGAAGCGTCAGCGTGATGTTGCCGACCTCGATGCAAGATATATAAAGGAA 45319 || |||||| || ||| |||||||||||||| | || |||| || ||| | ||||| Sbjct 625 ACTGACATGCAGATGCGCCAGCGTGATGTTGCTGCACTGGATGAAAAATACACGAAGGAG 684 Query 45320 TTAGCCGATGCGAAAGCTGAGAATGATGCTTTGCGCGATGATGT 45363 ||||| ||||||||||||| ||||||||| |||| |||| ||| Sbjct 685 TTAGCTAATGCGAAAGCTGAAAATGATGCTCTGCGTGATGGTGT 728 >seq360 Length=29890 Score = 149 bits (164), Expect = 2e-31 Identities = 240/345 (70%), Gaps = 0/345 (0%) Strand=Plus/Plus Query 32899 GCCACCAAGCATTTGCATGGTTCCACTAACGCCAACGATGACTTCGGTAGTGAACCGATT 32958 ||| || ||||| |||||||| || | ||| || | |||||||| ||| | | Sbjct 27239 GCCGCCCAGCATCTGCATGGTGCCGCCCACGTTCACCACCACTTCGGTGGTGTATTTGTC 27298 Query 32959 CTGTCCACTTTGGTCCTGCCATTTTCTTGTCCGCAATTTGCCTTCAAGATAAACCTCAGA 33018 ||| || ||| || ||| || | || |||| | |||||||| || |||| ||| Sbjct 27299 CTGACCGGATTGATCGGTCCACTTGCGGGTACGCAGCTGGCCTTCAATGTACACCTGAGA 27358 Query 33019 GCCTTTTCGCAGATACTCGCTGGCAATTTCTGCCAGTTTCCCGCTCATCACCACACGGTG 33078 |||||| ||||||||||| | || | ||| |||||||| ||| || ||| || ||||| Sbjct 27359 GCCTTTACGCAGATACTCACCAGCGACTTCCGCCAGTTTGCCGAACAGCACAACGCGGTG 27418 Query 33079 CCACTCCGTCTGCTCCTTTTGCTCGCCAGTATTTTTATCTCGCCATTGTTCTGACGTAGC 33138 |||||| |||||||| || ||||| || | || || ||||| ||| || || || Sbjct 27419 CCACTCGGTCTGCTCTTTCATTTCGCCGGTCTGCTTGTCACGCCAGGATTCGGAAGTTGC 27478 Query 33139 TATTGTCAGGTTAGCGAACGCTGTTCCTGATGGTGAGTATCTAACTTCCGGGTCTTGTCC 33198 | || | ||| |||| || || ||| ||| | ||||||||||| || || Sbjct 27479 CAGCGTGAAGTTGGCGACAGCGCCGCCACTTGGCATGTAGCGTACTTCCGGGTCCTGCCC 27538 Query 33199 AACCCGACAAAGGATAATCACCTTATTTACGCCTCTGCTTGCCAT 33243 | || | || ||||||||| |||||||||||||| ||||| Sbjct 27539 CAGATTACCGACGAGAATCACCTTGTTTACGCCTCTGCTGGCCAT 27583 >seq3840 Length=990 Score = 116 bits (128), Expect = 1e-21 Identities = 140/185 (76%), Gaps = 4/185 (2%) Strand=Plus/Plus Query 46640 GCGTTGTATCGTCGCAGTATCACCGCATTAACAATGACCGCAGCCCTTAATGGGAGCTCC 46699 ||| ||||||||||| |||| |||||||||| ||||||| ||||| | |||| ||| Sbjct 608 GCGCTGTATCGTCGCCGTATTCCCGCATTAACCATGACCGTAGCCCG-ACGGGGAATTCC 666 Query 46700 TTCTGCGTGAGTGTGCAATGATAATCAATAACGATGCATACCGGGGTTTGCAGCTTTTAC 46759 |||||||||||||||| |||||||| ||||||||| |||||| ||| | | | || Sbjct 667 TTCTGCGTGAGTGTGCGGGAATAATCAAAAACGATGCACACCGGGTTTTACTGTGCTGAC 726 Query 46760 GATGGCTGGTTTATCCCTCATTGCTCGCCATCTCGATGCGGGGGTAGAAGAAATCGAGGG 46819 || || ||| ||||||| | |||| | || |||| ||| ||||||| || || Sbjct 727 AGACGCAGGGTTA-CCCTCATAG-TCGCTTTTCCGGTGCGATGGTGGAAGAAACCG-GGA 783 Query 46820 TGTTT 46824 ||||| Sbjct 784 TGTTT 788 >seq501 Length=12468 Score = 93.3 bits (102), Expect = 1e-14 Identities = 97/128 (76%), Gaps = 11/128 (9%) Strand=Plus/Minus Query 26423 CTTATTTTTA-TTGTGGGACATATTTGGGACAG----------AAGTACCAAAAATCGAG 26471 || |||||| ||||||||||||||||||||| || | ||||||| ||| Sbjct 10997 CTGATTTTTCCTTGTGGGACATATTTGGGACATCTTCTGCAAAAATTTGCAAAAATTGAG 10938 Query 26472 TCAATTTGTCGAGCATGTTCAGTCAGGTGATTTGGTGCCAGATGAGCATATCTGCGAACC 26531 |||||||| || || || ||||| | || || |||||||| |||||||||| || ||| Sbjct 10937 TCAATTTGACGTGCGTGCTCAGTTAAATGGTTAGGTGCCAGGTGAGCATATCGACGGACC 10878 Query 26532 ATTTCGAT 26539 |||||||| Sbjct 10877 ATTTCGAT 10870 >seq62 Length=1393 Score = 86.0 bits (94), Expect = 2e-12 Identities = 50/52 (96%), Gaps = 0/52 (0%) Strand=Plus/Plus Query 26342 ATTCGTAATGCGAAGGTCGTAGGTTCGACTCCTATTATCGGCACCAGTTAAA 26393 |||||||||||||||||||||||||||||||||||||||||||||| || || Sbjct 25 ATTCGTAATGCGAAGGTCGTAGGTTCGACTCCTATTATCGGCACCATTTCAA 76 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 149908134600388