Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acytostelium_20leptosomum_20[genbank_20GCA_5F900092245.1_202017-01- 02] 28,227 sequences; 57,256,845 total letters Query= NC_006966.1 Length=166259 Score E Sequences producing significant alignments: (Bits) Value seq19 109 6e-19 seq3533 82.4 8e-11 >seq19 Length=770976 Score = 109 bits (120), Expect = 6e-19 Identities = 300/454 (66%), Gaps = 12/454 (3%) Strand=Plus/Minus Query 21183 TTTTTTGATAATCACTAACTCTTTTTTCGAAAAAATTTGTCTTTCCTTCCAATGATATAG 21242 ||||||||||||||| || | ||| || || ||||| || || |||| || || || Sbjct 360853 TTTTTTGATAATCACCCACACGTTTCTCAAAGAAATTGGTTTTGCCTTGCAGGGAGATCA 360794 Query 21243 ATTCCATAAAATCAAATGGATTTTCAGATTTAAATATTTTATTACAACCCAGTTCTGATA 21302 |||||||||||||| ||||| | | | ||||||| || |||||||||| | Sbjct 360793 TCTCCATAAAATCAAACGGATTGGTGGCATGATATATTTTGGTATAACCCAGTTCCTGCA 360734 Query 21303 ATAATCTATCTGCTACAAATTCTATATATTGACACATTAATTCACAATTCATACCGATCA 21362 |||| ||||| ||||| || ||||| || |||| | || |||||| ||||||| Sbjct 360733 GCCATCTGTCTGCAACAAACTCAATATACTGTGACATCAGTTTTGCATTCATCCCGATCA 360674 Query 21363 ATTTTACAGGAAGAGCTTTTGTCAAAAAAGATTTTTCTATAGAGACGGCTTCAACAATTA 21422 || || | || | ||| | ||| ||||| || || || || || | Sbjct 360673 GGGCAACCGGCAAGGCATCTGTAATAAATTCCTTTTCGATTTCTACCGCGTCGCGGATAA 360614 Query 21423 TATTTATTATCCTAGATGTACTAGGGGGATACAATAATTG-----TTTAAACATCAAACA 21477 | | || | | || | || || | || ||| |||| | | || || Sbjct 360613 T-TCCATGAAC---GACTTCCT-GGCTCAGTTTATTTTTGAGCATTTTATAAAGCAGGCA 360559 Query 21478 TGCAAAATCACAATGCAAACCTTCATCCCTACTTATTAATTCATTAGAAAATGTTAAACC 21537 ||||| |||||||||| || ||||| || || || |||||| ||| |||| || Sbjct 360558 GGCAAATTCACAATGCATCCCCTCATCTCTGGAAATCAACTCATTACTAAAGGTTAGCCC 360499 Query 21538 GGGCATTAATCCTCTCTTTTTTAACCAAAATATTGACGCAAATGCTCCTG-AAAAGAAAA 21596 ||||| | ||||| ||||| ||||| || || || || | ||||| | ||||||| Sbjct 360498 TGGCATCAGGCCTCTTTTTTTCAACCAGAAGATCGA-ACAGAAGCTCCCGCTGAAGAAAA 360440 Query 21597 TGCCCTCAACGGCAGCAAATGCAACTAATCGTTC 21630 |||| || || || || || || || || ||||| Sbjct 360439 TGCCTTCCACTGCGGCGAAAGCCACCAAACGTTC 360406 >seq3533 Length=1137 Score = 82.4 bits (90), Expect = 8e-11 Identities = 126/177 (71%), Gaps = 2/177 (1%) Strand=Plus/Minus Query 21463 TTTAAACATCAAACATGCAAAATCACAATGCAAACCTTCATCCCTACTTATTAATTCATT 21522 |||| ||| || || ||||| || || || | ||| || || | ||| || | || || Sbjct 967 TTTATACAGCATGCAAGCAAAGTCGCAGTGTAGACCCTCGTCACGACTGATCAGCTCGTT 908 Query 21523 AGAAAATGTTAAACCGGGCATTAATCCTCTCTTTTTTAACCAAAATATTGACGCAAATGC 21582 ||||| || | || |||||||| || || || || ||||| | || | | |||| || Sbjct 907 GGAAAAGGTAAGGCCTGGCATTAAACCCCTTTTCTTCAACCAGTAGATGG-CACAAAAGC 849 Query 21583 TCCTGAA-AAGAAAATGCCCTCAACGGCAGCAAATGCAACTAATCGTTCACCGTATG 21638 | | | ||||| || |||||||| ||||||||||| || || ||||| || ||| Sbjct 848 TGCCGCTGAAGAAGATACCCTCAACCGCAGCAAATGCCACCAAACGTTCGGCGAATG 792 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 531713125451480