Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acytostelium_20leptosomum_20[genbank_20GCA_5F900092245.1_202017-01- 02] 28,227 sequences; 57,256,845 total letters Query= NC_007383.1 Length=134394 Score E Sequences producing significant alignments: (Bits) Value seq8653 129 5e-25 seq1351 100 2e-16 seq3381 89.7 4e-13 >seq8653 Length=1535 Score = 129 bits (142), Expect = 5e-25 Identities = 155/211 (73%), Gaps = 0/211 (0%) Strand=Plus/Minus Query 23990 AATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAA 24049 ||||||| | |||||||| ||||| |||||||| | || || | || ||||||| | Sbjct 421 AATGCAAATCTTTGTAAAGACATTGACTGGAAAGACCATCACACTAGAGGTCGAGGGCTC 362 Query 24050 CGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCA 24109 ||||| |||||| | ||||| ||||||| ||||||||||| || || |||||||| Sbjct 361 TGACACTATCGAGAACGTCAAGGCAAAGATTCAAGACAAAGAAGGTATCCCACCCGATCA 302 Query 24110 ACAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTATAA 24169 ||| | |||| | | |||||||||||| ||||| | | | || |||| || || Sbjct 301 ACAACGTTTGATCTTTGCCGGCAAGCAACTTGAAGACGGTCGCACTCTCGGCGACTACAA 242 Query 24170 CATTCAAAAAGAATCTACAATTCATTTAGTG 24200 |||||| || || ||||| | || || ||| Sbjct 241 CATTCAGAAGGAGTCTACCCTCCACTTGGTG 211 >seq1351 Length=12664 Score = 100 bits (110), Expect = 2e-16 Identities = 148/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050 |||||| | ||||| || || |||||||||| | || || | || ||||||| | Sbjct 4704 ATGCAAATCTTTGTGAAGACTCTAACTGGAAAGACCATCACTCTGGAGGTCGAGGGATCC 4763 Query 24051 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAA 24110 |||||||||||| | ||||| ||||| ||||| || || || || ||||| || Sbjct 4764 GACACCATCGAGAACGTCAAGGCCAAGATCCAAGACAAGGAGGGTATTCCACCCGACCAG 4823 Query 24111 CAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTATAAC 24170 ||| | || || | | ||||||||| || || |||| | | | || | || || ||| Sbjct 4824 CAGCGTCTCATCTTTGCCGGCAAGCAGCTTGAGGATGGACGCACCCTCGGTGACTACAAC 4883 Query 24171 ATTCAAAAAGAATCTACAATTCATTTAGTG 24200 |||||||| || || || |||| || ||| Sbjct 4884 ATTCAAAAGGAGTCCACCCTTCACTTGGTG 4913 Score = 91.5 bits (100), Expect = 1e-13 Identities = 145/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050 ||||| | || || || || | ||||| || | || ||| |||| ||||||| | Sbjct 4476 ATGCAGATCTTCGTCAAGACCCTCACTGGCAAGACCATCACCCTCGAGGTCGAGGGATCC 4535 Query 24051 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAA 24110 |||||||||||| | ||||| ||||| ||||| || || || || ||||| || Sbjct 4536 GACACCATCGAGAACGTCAAGNNCAAGATCCAGGACAAGGAGGGTATCCCACCCGACCAG 4595 Query 24111 CAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTATAAC 24170 || | |||| | | |||||||||||| || |||| | | | || | || || ||| Sbjct 4596 CAACGTTTGATCTTTGCCGGCAAGCAACTTGAGGATGGACGCACCCTCGGTGACTACAAC 4655 Query 24171 ATTCAAAAAGAATCTACAATTCATTTAGT 24199 |||||||| || || || |||| || || Sbjct 4656 ATTCAAAAGGAGTCCACCCTTCACTTGGT 4684 Score = 86.0 bits (94), Expect = 5e-12 Identities = 155/227 (68%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050 ||||| | || || || || | ||||| || | || || | || || |||| | Sbjct 4932 ATGCAGATCTTCGTCAAGACCCTCACTGGCAAGACCATCACACTTGAGGTTGAGGGCTCT 4991 Query 24051 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAA 24110 |||||||||||| | ||||| |||||| ||||| || || || || ||||| || Sbjct 4992 GACACCATCGAGAACGTCAAGGCCAAGATTCAAGACAAGGAGGGAATCCCACCCGACCAG 5051 Query 24111 CAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTATAAC 24170 ||| | || || | | ||||||||| || || |||| | | | |||| |||||| Sbjct 5052 CAGCGTCTCATCTTTGCCGGCAAGCAGCTTGAGGATGGTCGCACTCTTGGCGACTATAAC 5111 Query 24171 ATTCAAAAAGAATCTACAATTCATTTAGTGTTAAGATTGAGAGGAGG 24217 |||||||| || || || |||| || || || ||| | | ||||| Sbjct 5112 ATTCAAAAGGAGTCCACCCTTCACTTGGTATTGAGACTTCGTGGAGG 5158 >seq3381 Length=12314 Score = 89.7 bits (98), Expect = 4e-13 Identities = 138/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050 |||||| | ||||| || || || || ||||| | || ||| |||| || |||| Sbjct 1187 ATGCAAATCTTTGTGAAGACTTTGACCGGAAAGACTATCACCCTCGAGGTTGAGGGTTCG 1246 Query 24051 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAA 24110 || || |||||| | ||||| ||||| || || || || || || |||||||| Sbjct 1247 GATACTATCGAGAACGTCAAGGCCAAGATCCAAGATAAGGAGGGTATCCCACCCGATCAG 1306 Query 24111 CAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTATAAC 24170 || | || || | | ||||||||||||||| |||| | | | |||| || ||| Sbjct 1307 CAACGTCTCATCTTTGCCGGCAAGCAACTCGAGGATGGTCGTACTCTTGGCGACTACAAC 1366 Query 24171 ATTCAAAAAGAATCTAC 24187 |||||||| |||||||| Sbjct 1367 ATTCAAAAGGAATCTAC 1383 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 429788094895185