Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acytostelium_20leptosomum_20[genbank_20GCA_5F900092245.1_202017-01- 02] 28,227 sequences; 57,256,845 total letters Query= NC_007497.1 Length=44856 Score E Sequences producing significant alignments: (Bits) Value seq6137 125 2e-24 seq85 111 5e-20 >seq6137 Length=2664 Score = 125 bits (138), Expect = 2e-24 Identities = 593/923 (64%), Gaps = 28/923 (3%) Strand=Plus/Plus Query 27396 GTACTGGTTCGCCGGGTCGTTATAGCTGACGAGCGCGACCGTGTACCGCGTCTTACGCTC 27455 ||| | |||| ||||| || |||||||| ||||| ||| | | |||| | ||||| Sbjct 1649 GTAGTTGTTCAGCGGGTTGTCGTAGCTGACCAGCGC--CCGGGAATAGCGTGTG-CGCTC 1705 Query 27456 -GCTGC---CGACATACCGGAACGAGCCATCGATCACGTTCGCCGCCGTGTACACGTACA 27511 | ||| ||| ||| |||| ||||||||| ||||||||| ||||| || | Sbjct 1706 CGATGCGCTCGA-ATAGGTGAACTTGCCATCGATGACGTTCGCCCGGGTGTAGGCGAAGT 1764 Query 27512 CCGGATCTGA------CGGCATGTCCGCCGATGCGACGACAGCTCCCGGCCCCCAGTAGG 27565 | || | |||||| |||| | | || ||| ||| | |||| |||| Sbjct 1765 CGAAGTCAGTGGCGCGCGGCATATCCGACAGGGTGAAGACTTGGCCCTGGGCCCAATAGG 1824 Query 27566 CGATGCCGCGGAACACGCTCGCGATGTCCTGCAACACCTTGAACGCGTCGGCCGCCGACT 27625 ||||| ||| | | ||| |||||| ||| || | | || || ||| || Sbjct 1825 TCATGCCTCGGTAAATCGTCGAGATGTCGCGCAGCAGCGACCATGCATCCGCCTTGCTCT 1884 Query 27626 GGATCACG--CAGTT-GCAGGCGAATCGCGGCTCGACGCCGCCTTTTCCGTCCGACACCA 27682 | || | ||| | |||| ||| ||||| || ||| || || |||| || ||||| Sbjct 1885 G---CAAGTTCAGATCGCAGATGAAACGCGGTTCCTGGCCACCCTTCCCGTTCGGCACCA 1941 Query 27683 TCACATCGCAGTAGCGCGCGATTTCGTACAGCCCCCACTTGTCGATCATCGATGCATCGA 27742 || ||||||||| ||| || ||||||| |||||||||||| |||| | | | || Sbjct 1942 TCTGATCGCAGTACTGCGAAATGCGGTACAGCTCCCACTTGTCGACCATCCACGGCTTGA 2001 Query 27743 CGGTCTTTCCGAGCCCGTAGCGCTCGTTCAACAGCAGGTCGTAGAAGATCCACGCGGGAT 27802 | ||||| ||| |||| ||||| ||| | ||| ||| | || | Sbjct 2002 TGCGACGGCCGAGGCCGAAGCGGTCGTTTGTGGTTAGGCCATAGGTATGCCAGACAGGGT 2061 Query 27803 TGTTCGTCCATGCCGGTTTGAACGTGCCGTCCCACGTGCCCGAGTACGTGCGCGTCTCAG 27862 ||| ||||||||| ||||| ||||| ||||| ||| ||||| |||||| || Sbjct 2062 TGTCGGTCCATGCCTCCTTGAATGTGCCATCCCAAACGCCAGAGTAGCTGCGCGATCGAG 2121 Query 27863 GATCGTAGTTCGACGGCACACG-CACGATCAGACCTCGAACGTGGTACGAGCGCACCGGG 27921 | ||||| || |||||| | ||| | | | ||| | || | | ||||| Sbjct 2122 GGTCGTAATTGCTCGGCACCTGCCACTTGCGGCCGTCGCAATCAATA-GTGACTGCCGGG 2180 Query 27922 A-CCTGCGAGAAC-GAGCGCGCGTCGAACGTCATACCCACGAGCGCAGTCATCGGATAGC 27979 | ||||| |||| | || ||| ||| ||| || | ||| || | ||||| | Sbjct 2181 ATACTGCG-GAACTGCTCG-GCGGAAAACTCGATATACAACAACGCGGTGTTTGGATACC 2238 Query 27980 GCAGCTTGCGGTCGATGATTTCGGTGATCGCCTCGATGTTCACCGTGTCGGCGATCAGCG 28039 ||||||| |||||| | || |||| | |||| | || |||||||| ||| Sbjct 2239 GCAGCTTCGCGTCGATCACCTCAGTGAAGCCGGCGATCTGCATCGTGTCGGAGATTTTGT 2298 Query 28040 AGCTGTGCGCATTCGGCGTAATGCGCCGCACGCGCACCAGCCAGCCGGATTTCGCACTCG 28099 | ||| | || ||| | |||| | ||||| ||||||||| || | || ||| Sbjct 2299 TGTTGTTCTGGTTGATCGTCAGGCGCGTGATGCGCATCAGCCAGCCAGAAGTAGCCTTCG 2358 Query 28100 GCAGCTCGATCCGATGGGAACGCTCGTACAGCGACGTCGTCTTGCCGTCAAAGGCGCCGC 28159 ||| ||||| || ||| |||||||||| || ||||||||||| | || ||| Sbjct 2359 GCAAATCGATGCGGCGGGTGCGCTCGTACACGCTGGTGGTCTTGCCGTCGACAGCTTCGC 2418 Query 28160 GCAGCACTTCCGCGTACGAGCCCCCGTCAACCGACAGGTCAATCGCATACTCGACTCGGT 28219 |||||| | | ||| | || ||||| | ||| |||| | ||||||| ||||| Sbjct 2419 TCAGCACCTGCTGGTAAGCACCGCCGTCGGTTGCCAGCTCAACCTTGTACTCGATTCGGT 2478 Query 28220 AGCCGAACACGCCGGACGAC-GGGTCACTCTTCTGCAGCGCAGGCACGCCGAAGCGAATA 28278 | ||| | | | || | | ||| ||| ||||| ||| | ||||||||| | Sbjct 2479 ACCCGTTGATG-TTGCCGCCAGCGTCTACGGACTGGAGCGCTGGCCAGGCGAAGCGAACA 2537 Query 28279 CGGACTGCCGTGAGCTGCGTGTT 28301 || || |||| ||||| |||| Sbjct 2538 CGAACGGCCGAAAGCTGGTTGTT 2560 Score = 95.1 bits (104), Expect = 3e-15 Identities = 135/184 (73%), Gaps = 6/184 (3%) Strand=Plus/Plus Query 26213 CCGGATACCATGGCCCGACGTTTCCGGACGTGTCCACGAGGCGCGCCCAGAAGTAGAAC- 26271 ||||||| | || |||| ||| |||| |||||| ||||||||||||||| ||||| Sbjct 484 CCGGATAGAACGGACCGATGTTGCCGGTGCGGTCCACCAGGCGCGCCCAGAAGAAGAACT 543 Query 26272 ACCTGCCCGACCGCAAGCCCCTG-ATACGACGTGGAC-GCCTGCGGATACGCGAAATCCG 26329 | ||||| | || ||| ||| || || || | | |||||||| || || ||||||| Sbjct 544 GCGCGCCCGCCAGC-AGCGACTGCATGCG--GTAGTCAGCCTGCGGGTATGCCAAATCCG 600 Query 26330 AAAACTTCGTGGCGTCGTCGCGGCTCGGCGTCCGGCTGTACCAGATCTCGGTGCGCTGCG 26389 | |||||| ||| || || || | |||| || ||||||||| ||| || ||||| | Sbjct 601 CCAGCTTCGTCGCGGCGCCGAGGTTGTTCGTCGGGTTGTACCAGAGCTCCGTCCGCTGGG 660 Query 26390 TGTC 26393 | || Sbjct 661 TATC 664 >seq85 Length=367292 Score = 111 bits (122), Expect = 5e-20 Identities = 218/314 (69%), Gaps = 20/314 (6%) Strand=Plus/Plus Query 39258 GCAGGCCGCCGCCGACGCGCTTCGTCGTGTAGAACAGTACGTACGGCTTCGCCGTGTACG 39317 ||| ||||||||| |||||||| || || |||||||| ||||| || || || | || | Sbjct 348059 GCACGCCGCCGCCCACGCGCTTGGTGGTATAGAACAGCACGTAGGGTTTGGCGGAATAGG 348118 Query 39318 GATCGCGCAGCACGCGAACCCCGATGCGGTCGATGATCAGATACGTCTGCTGGAAGTCGC 39377 |||||||||| || || |||||| |||| || | | |||||| | | ||| |||| Sbjct 348119 GATCGCGCAGGACCCGCACCCCGGTGCGATCCACCACCAGATAACCCCGGGCGAAATCGC 348178 Query 39378 CGAAGAGAATCGGCGTCGAGTTCGCCGCC-----ACATC--CGGCATGTCCGGCACCTCG 39430 ||||| ||| ||| || ||||||| |||| ||||| | | ||| Sbjct 348179 CGAAGGCAAT-GGC----AG--CGCCGCCGGTTGTCATCGGTGGCATCGCTTCTGCTTCG 348231 Query 39431 GT-AACCGGATAGCCCGCCAGCGTCGCCGGCTGCCCCGCTACGTACGACGGTTGCCAGAG 39489 || | ||||| ||||| ||| | ||| |||| || | | | | ||| |||||| Sbjct 348232 GTCAGCCGGA-AGCCCAGCAGTGAGGCCTGCTGGCCGGGTGCTGCGGGCGGCGTCCAGAG 348290 Query 39490 ATAGTTCCCTTGGCCGTCCTTCAGCTTCCGCAC--CTGACGCTGCGTGTTGCGGTTCATC 39547 |||||| || | |||||| ||||| ||||| ||| |||||| |||||||||||| Sbjct 348291 ATAGTTGCCGTCATTGTCCTTGAGCTTGCGCACGGCTG--CCTGCGTCTTGCGGTTCATC 348348 Query 39548 GCGAAGCGGGCGTT 39561 | ||| ||| || Sbjct 348349 ACCCAGCTGGCATT 348362 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 143369527047932