Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acytostelium_20leptosomum_20[genbank_20GCA_5F900092245.1_202017-01- 02] 28,227 sequences; 57,256,845 total letters Query= NC_008168.1 Length=104710 Score E Sequences producing significant alignments: (Bits) Value seq23894 111 1e-19 seq6832 104 2e-17 seq8653 102 5e-17 seq4240 102 5e-17 seq3382 100 2e-16 seq3381 93.3 3e-14 seq112 93.3 3e-14 seq103 84.2 1e-11 >seq23894 Length=420 Score = 111 bits (122), Expect = 1e-19 Identities = 72/79 (91%), Gaps = 5/79 (6%) Strand=Plus/Minus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956 |||||||||||||||||||||||||||||||||||||||||||| || |||||||| Sbjct 390 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGGACAGTGGGAATCTCGT 331 Query 25957 TAATCCTTTCATGCGCGTC 25975 |||||| |||||||||||| Sbjct 330 TAATCCATTCATGCGCGTC 312 >seq6832 Length=1101 Score = 104 bits (114), Expect = 2e-17 Identities = 69/77 (90%), Gaps = 0/77 (0%) Strand=Plus/Minus Query 19947 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCGC 20006 ||||||||||||||| ||||||||||||||||||||||||||||| |||||||| ||| Sbjct 353 CTCTCTCTTCAAAGTGCTTTTCAACTTTCCCTCACGGTACTTGTTTGCTATCGGATTCGT 294 Query 20007 GGTAATATTTAGCCTTA 20023 || |||||||| |||| Sbjct 293 AGTGATATTTAGTCTTA 277 >seq8653 Length=1535 Score = 102 bits (112), Expect = 5e-17 Identities = 152/216 (70%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 38102 ACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGACAAAACACGTTC 38161 ||||| |||||| || || || |||||| ||||| ||||| || | | || | Sbjct 205 ACGCAGCACCAAGTGGAGGGTAGACTCCTTCTGAATGTTGTAGTCGCCGAGAGTGCGACC 264 Query 38162 GTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGGGACGCCTTCTTT 38221 ||| || | ||| || |||||||| || | ||||||||||||| |||| |||||||| Sbjct 265 GTCTTCAAGTTGCTTGCCGGCAAAGATCAAACGTTGTTGATCGGGTGGGATACCTTCTTT 324 Query 38222 GTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAACTTCTAATGTAAT 38281 ||| ||| ||| ||| || |||| || ||| || | || || |||| ||| || Sbjct 325 GTCTTGAATCTTTGCCTTGACGTTCTCGATAGTGTCAGAGCCCTCGACCTCTAGTGTGAT 384 Query 38282 AGTTTTACCCGTCAAGGTTTTCACGAATATCTGCAT 38317 || || || ||||| || || || || || ||||| Sbjct 385 GGTCTTTCCAGTCAATGTCTTTACAAAGATTTGCAT 420 >seq4240 Length=2116 Score = 102 bits (112), Expect = 5e-17 Identities = 160/229 (70%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 38089 TACCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAG 38148 |||| || | | ||| | |||||| ||||| ||| |||||| ||||||||||| |||| Sbjct 1671 TACCTCCACGGAGACGGAGCACCAAGTGAAGGGTGGACTCCTTCTGAATATTGTAGTCAG 1612 Query 38149 ACAAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGG 38208 | | | || |||| || | || ||||||||||| || || || || || |||| | Sbjct 1611 AGAGAGTGCGACCGTCCTCGAGCTGCTTTCCGGCAAAGATGAGACGCTGCTGGTCGGGTG 1552 Query 38209 GGACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAA 38268 ||| || || |||||| || || ||| || |||| || || || | ||| | Sbjct 1551 GGATTCCCTCCTTGTCCTGGATCTTGGCCTTGACGTTCTCGATGGTGTCAGAGCCTTCGA 1492 Query 38269 CTTCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCAT 38317 | || | || || || || || ||||| || || ||||| |||||||| Sbjct 1491 CCTCAAGGGTGATGGTCTTTCCAGTCAAAGTCTTGACGAAGATCTGCAT 1443 Score = 98.7 bits (108), Expect = 7e-16 Identities = 147/209 (70%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 38109 ACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGACAAAACACGTTCGTCGTCT 38168 |||||||| ||||| |||||| || |||||||| ||||| | ||| | || || Sbjct 1423 ACCAAATGGAGAGTTGACTCCTTCTGGATATTGTAGTCAGAGAGGGTACGACCATCCTCC 1364 Query 38169 AATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGGGACGCCTTCTTTGTCCATA 38228 || || ||||||||||| || || ||||| || |||| || | || || |||||| Sbjct 1363 AACTGCTTTCCGGCAAAGATGAGACGTTGCTGGTCGGGTGGAATTCCCTCCTTGTCCTGG 1304 Query 38229 ATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAACTTCTAATGTAATAGTTTTA 38288 || || ||| || |||| || || || | || || || | |||||||| ||| Sbjct 1303 ATCTTGGCCTTGACGTTCTCGATGGTGTCCGAGCCCTCGACCTCAAGGGTAATAGTCTTA 1244 Query 38289 CCCGTCAAGGTTTTCACGAATATCTGCAT 38317 || || | ||||| ||||| |||||||| Sbjct 1243 CCAGTGAGTGTTTTTACGAAAATCTGCAT 1215 >seq3382 Length=4522 Score = 100 bits (110), Expect = 2e-16 Identities = 162/233 (70%), Gaps = 0/233 (0%) Strand=Plus/Minus Query 38089 TACCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAG 38148 |||| || | | ||| | |||||| ||||| ||| ||||||||| || ||||| |||| Sbjct 4181 TACCTCCACGGAGACGGAGCACCAAGTGAAGGGTGGACTCCTTTTGGATGTTGTAGTCAG 4122 Query 38149 ACAAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGG 38208 | | ||| |||| || || || ||||||||||| || || || || || |||| | Sbjct 4121 AGAGGGTACGACCGTCCTCCAACTGCTTTCCGGCAAAGATGAGACGCTGCTGGTCGGGTG 4062 Query 38209 GGACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAA 38268 ||| || || ||||| || || ||| || |||| || ||||| || |||| Sbjct 4061 GGATTCCCTCCTTGTCTTGGATCTTGGCCTTGACGTTCTCGATGGTATCGGAACCCTCAA 4002 Query 38269 CTTCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCATGTTT 38321 | || | || || || || || |||| || || ||||| || |||||| || Sbjct 4001 CCTCAAGGGTGATGGTCTTTCCGGTCAGAGTCTTGACGAAAATTTGCATGATT 3949 >seq3381 Length=12314 Score = 93.3 bits (102), Expect = 3e-14 Identities = 148/210 (70%), Gaps = 2/210 (1%) Strand=Plus/Minus Query 38109 ACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGACAA-AACACGTTCGTCGTC 38167 ||||| || ||||| ||||||||||| ||||| || | ||| | ||| | || || Sbjct 1395 ACCAAGTGGAGAGTAGATTCCTTTTGAATGTTGTAGTC-GCCAAGAGTACGACCATCCTC 1337 Query 38168 TAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGGGACGCCTTCTTTGTCCAT 38227 | ||| || |||||||| || || ||||| ||||||| |||| || || || || Sbjct 1336 GAGTTGCTTGCCGGCAAAGATGAGACGTTGCTGATCGGGTGGGATACCCTCCTTATCTTG 1277 Query 38228 AATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAACTTCTAATGTAATAGTTTT 38287 || || ||| || |||| || |||||| || ||||| || | || ||||| || Sbjct 1276 GATCTTGGCCTTGACGTTCTCGATAGTATCCGAACCCTCAACCTCGAGGGTGATAGTCTT 1217 Query 38288 ACCCGTCAAGGTTTTCACGAATATCTGCAT 38317 || ||||| || ||||| || || ||||| Sbjct 1216 TCCGGTCAAAGTCTTCACAAAGATTTGCAT 1187 >seq112 Length=13817 Score = 93.3 bits (102), Expect = 3e-14 Identities = 72/86 (84%), Gaps = 5/86 (6%) Strand=Plus/Plus Query 25904 GCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGTTA 25958 |||||||||| || ||||||||||||| ||||||| ||||| || |||||| || Sbjct 4511 GCCCGTTCCCCTGACTGTGGTTTCGCTGTATAGTAGTTAGGGACAGTGGGAATCTCATTG 4570 Query 25959 ATCCTTTCATGCGCGTCACTAATTAG 25984 |||| ||||||||||||||||||||| Sbjct 4571 ATCCATTCATGCGCGTCACTAATTAG 4596 >seq103 Length=5517 Score = 84.2 bits (92), Expect = 1e-11 Identities = 57/64 (89%), Gaps = 0/64 (0%) Strand=Plus/Minus Query 19960 GTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCGCGGTAATATTTAGC 20019 |||||||||| ||||||||||||||||| |||| ||||||||||| | | | |||||||| Sbjct 2896 GTTCTTTTCACCTTTCCCTCACGGTACTGGTTCACTATCGGTCTCTCAGGAGTATTTAGC 2837 Query 20020 CTTA 20023 |||| Sbjct 2836 CTTA 2833 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 334831972615637